Cp4.1LG15g01200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g01200
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein LATE FLOWERING-like
Location	Cp4.1LG15: 980656 .. 981150 (-)
RNA-Seq Expression	Cp4.1LG15g01200
Synteny	Cp4.1LG15g01200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCATCAACACAACAACCTCTCAAACTCACCTGCAATCCAAGAAACCCCACCAAGAATCTTCCCATGTCTATTCTGTTCAAGAAAGTTCCATACCTCTCAAGCTTTAGGAGGCCATCAAAATGCCCACAAGAAAGAAAGAACCGCCGCCCGAAAGGCCAAGCGGATATCCGATTACGCACCGTCCGAGTCCCCATCGCCCTCCTCCTCCTCCTCCTCCTCCTCGGTCTTTGCAGCTACCCACCACCAAACGCATCATCCAGGGCCATACCCACATCCAATGTACATTGCTAATGCTGCTAATCTTCATTGCTTCCCCAATAATCCACCTTTGTTCTATGAACACATCGGGTACTATGCTGGGGTTTGTTCAAGCAATAGATATCATCATCAATATGGGGTTGAAGATGAACAAAAGGCGTTGAATTGGCAGAGAAACATTAAGAATGATAACAAAAAACAACAAAAACTTGATCTTTCCCTTCATTTATAG

mRNA sequence

ATGAAGCATCAACACAACAACCTCTCAAACTCACCTGCAATCCAAGAAACCCCACCAAGAATCTTCCCATGTCTATTCTGTTCAAGAAAGTTCCATACCTCTCAAGCTTTAGGAGGCCATCAAAATGCCCACAAGAAAGAAAGAACCGCCGCCCGAAAGGCCAAGCGGATATCCGATTACGCACCGTCCGAGTCCCCATCGCCCTCCTCCTCCTCCTCCTCCTCCTCGGTCTTTGCAGCTACCCACCACCAAACGCATCATCCAGGGCCATACCCACATCCAATGTACATTGCTAATGCTGCTAATCTTCATTGCTTCCCCAATAATCCACCTTTGTTCTATGAACACATCGGGTACTATGCTGGGGTTTGTTCAAGCAATAGATATCATCATCAATATGGGGTTGAAGATGAACAAAAGGCGTTGAATTGGCAGAGAAACATTAAGAATGATAACAAAAAACAACAAAAACTTGATCTTTCCCTTCATTTATAG

Coding sequence (CDS)

ATGAAGCATCAACACAACAACCTCTCAAACTCACCTGCAATCCAAGAAACCCCACCAAGAATCTTCCCATGTCTATTCTGTTCAAGAAAGTTCCATACCTCTCAAGCTTTAGGAGGCCATCAAAATGCCCACAAGAAAGAAAGAACCGCCGCCCGAAAGGCCAAGCGGATATCCGATTACGCACCGTCCGAGTCCCCATCGCCCTCCTCCTCCTCCTCCTCCTCCTCGGTCTTTGCAGCTACCCACCACCAAACGCATCATCCAGGGCCATACCCACATCCAATGTACATTGCTAATGCTGCTAATCTTCATTGCTTCCCCAATAATCCACCTTTGTTCTATGAACACATCGGGTACTATGCTGGGGTTTGTTCAAGCAATAGATATCATCATCAATATGGGGTTGAAGATGAACAAAAGGCGTTGAATTGGCAGAGAAACATTAAGAATGATAACAAAAAACAACAAAAACTTGATCTTTCCCTTCATTTATAG

Protein sequence

MKHQHNNLSNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSPSSSSSSSSVFAATHHQTHHPGPYPHPMYIANAANLHCFPNNPPLFYEHIGYYAGVCSSNRYHHQYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL

Homology

[Close]

BLAST of Cp4.1LG15g01200 vs. ExPASy Swiss-Prot
Match: Q9FKA9 (Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.4e-14
Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 0


Query: 20  RIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSPSSSSSSSSVFA 79
           RIFPCLFCSRKFH+SQALGGHQNAHKKERTAAR+AKR  D+      + +    +  VF 
Sbjct: 33  RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFV-----NNNDFLHTLPVFL 92

Query: 80  ATHHQTHHPGPYPHPMYIANAANLHCFPNNPP--LFYEHIGYYAGVCSSNRYHH---QYG 139
           ++  Q HH     +P     +A++ CFP   P    ++  G +  + +S++       Y 
Sbjct: 93  SSPSQ-HHLTILGYPA----SASVACFPTVHPDHPIFKSSGSHVVLATSHQGRDCKGGYC 152

Query: 140 VEDEQKALNWQRNIKNDNK-KQQKLDLSLHL 165
            +     L+   N+ N +K K Q LDLSLHL
Sbjct: 153 CQQRVDILDHHYNVVNSDKGKDQCLDLSLHL 173

[Close]

BLAST of Cp4.1LG15g01200 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-09
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 16  ETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSPSSSSSSS 75
           E  PR+F C +C RKF++SQALGGHQNAHK+ERT A++A  +          P + +SSS
Sbjct: 53  EANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMF-GHHHRPYTYTSSS 112

Query: 76  SVFAATHHQTHHPGPYPHPMYIANAANLHCFPNNPPLFYEH 117
               A     HH    P P+ ++   +   F N  PLF+++
Sbjct: 113 LGMQAHSGLLHHTLSQPQPL-VSRFHHQGYFGNTVPLFFDY 151

[Close]

BLAST of Cp4.1LG15g01200 vs. ExPASy Swiss-Prot
Match: Q9FFX4 (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-09
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 20 RIFPCLFCSRKFHTSQALGGHQNAHKKERTAARK 54
          R+FPC +C RKF+TSQALGGHQNAHK+ER AAR+
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69

[Close]

BLAST of Cp4.1LG15g01200 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-09
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 1   MKHQHNNLSNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAK---RI 60
           M    ++ +NS +  E  PR+F C +C RKF++SQALGGHQNAHK ERT A+K++   R 
Sbjct: 32  MSSSSSSSTNSSSCLE-QPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELFRS 91

Query: 61  SDYAPSESPSPSS 71
           S+   S+ P P S
Sbjct: 92  SNTVDSDQPYPFS 103

[Close]

BLAST of Cp4.1LG15g01200 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-07
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 3   HQHNNLSNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAP 62
           HQH         Q   PR+F C +C RKF++SQALGGHQNAHK+ERT    AKR   Y  
Sbjct: 55  HQHQQ------EQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTL---AKRGQYYKM 114

Query: 63  SESPSPSSS 72
           + S  PSS+
Sbjct: 115 TLSSLPSSA 114

[Close]

BLAST of Cp4.1LG15g01200 vs. NCBI nr
Match: XP_023511523.1 (protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339 bits (869), Expect = 1.47e-117
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MKHQHNNLSNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDY 60
           MKHQHNNLSNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDY
Sbjct: 1   MKHQHNNLSNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDY 60

Query: 61  APSESPSPSSSSSSSSVFAATHHQTHHPGPYPHPMYIANAANLHCFPNNPPLFYEHIGYY 120
           APSESPSPSSSSSSSSVFAATHHQTHHPGPYPHPMYIANAANLHCFPNNPPLFYEHIGYY
Sbjct: 61  APSESPSPSSSSSSSSVFAATHHQTHHPGPYPHPMYIANAANLHCFPNNPPLFYEHIGYY 120

Query: 121 AGVCSSNRYHHQYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL 164
           AGVCSSNRYHHQYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL
Sbjct: 121 AGVCSSNRYHHQYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL 164

[Close]

BLAST of Cp4.1LG15g01200 vs. NCBI nr
Match: XP_022967643.1 (protein LATE FLOWERING-like [Cucurbita maxima])

HSP 1 Score: 295 bits (755), Expect = 3.68e-100
Identity = 147/166 (88.55%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MKHQHNNLSNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDY 60
           MKH+ NNLSNSPA++E P RIFPCLFCSRKF +SQALGGHQNAHKKERTAARKAKRISDY
Sbjct: 1   MKHEQNNLSNSPAMEEIPSRIFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY 60

Query: 61  APSESPSPSSSSSSSSVFAATHHQTHHPGPYPHPMYIANAANLHCFPNNPPLFYEHIGYY 120
           A SESPSPSSSSSSS VFAATHHQTHHPG YPHPMYIANAANLHCFPNNPPLFYEH+GYY
Sbjct: 61  AASESPSPSSSSSSS-VFAATHHQTHHPGLYPHPMYIANAANLHCFPNNPPLFYEHMGYY 120

Query: 121 AGVCSSNRYHH--QYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL 164
            GVCSSNRYHH  QYGVEDEQ  LNWQRNIKND KK+QKLDLSLHL
Sbjct: 121 GGVCSSNRYHHHHQYGVEDEQNVLNWQRNIKNDKKKEQKLDLSLHL 165

[Close]

BLAST of Cp4.1LG15g01200 vs. NCBI nr
Match: KAG6571570.1 (hypothetical protein SDJN03_28298, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (474), Expect = 4.39e-58
Identity = 95/114 (83.33%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 57  ISDYAPSESPSPSS--SSSSSSVFAATHHQTHHPGPYPHPMYIA-NAANLHCFPNNPPLF 116
           +SDYAPSESPSPSS  SSSSSS+FAATHHQTHHPG YPHP+YIA +A NLHCFPNNPPLF
Sbjct: 1   MSDYAPSESPSPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLF 60

Query: 117 YEHIGYYAGVCSSNRYHH---QYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL 164
           YEH+GYY G+CS+NRYHH   QYGVEDEQK LNWQRNI+NDNKK+QKLDLSLHL
Sbjct: 61  YEHMGYYGGLCSTNRYHHHHHQYGVEDEQKVLNWQRNIQNDNKKEQKLDLSLHL 114

[Close]

BLAST of Cp4.1LG15g01200 vs. NCBI nr
Match: XP_022931139.1 (protein LATE FLOWERING [Cucurbita moschata])

HSP 1 Score: 182 bits (462), Expect = 1.88e-55
Identity = 107/166 (64.46%), Postives = 119/166 (71.69%), Query Frame = 0


Query: 9   SNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSP 68
           S+S  ++ETP RIFPCLFCSRKF TSQALGGHQNAHKKERTA RKAKR+SDY  S S S 
Sbjct: 13  SSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDY--SSSSSS 72

Query: 69  SSSSSSSSVFAATHHQTHHPGPYPHPMYIA-NAANLHCFPNNPPLFYEHIG--------- 128
           S SS   SVFA    Q HHP   PHP+YIA + ANLHCFPNN  +FY+ +G         
Sbjct: 73  SLSSRPLSVFAGNQ-QLHHPAILPHPVYIAAHGANLHCFPNNQQVFYDGLGVVPKFEDMV 132

Query: 129 YYAGVCSSNRYHHQYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL 164
           YY GVCS NRY  Q G EDE   LNWQR+IK D +K+QKLDLSLHL
Sbjct: 133 YYGGVCSYNRY--QCG-EDEDHVLNWQRSIKKDKEKEQKLDLSLHL 172

[Close]

BLAST of Cp4.1LG15g01200 vs. NCBI nr
Match: KAG6606329.1 (Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036269.1 Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (457), Expect = 9.85e-55
Identity = 105/166 (63.25%), Postives = 121/166 (72.89%), Query Frame = 0


Query: 9   SNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSP 68
           S+S  ++ETP RIFPCLFCSRKF TSQALGGHQNAHKKERTA RKAKRISDY+ S     
Sbjct: 13  SSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRISDYSSS----- 72

Query: 69  SSSSSSSSVFAATHHQTHHPGPYPHPMYIA-NAANLHCFPNNPPLFYEHIG--------- 128
           S+SS   SVFA +  Q HHP   PHPMYIA + A+LHCFPN+  +FY+ +G         
Sbjct: 73  SASSRPLSVFAGSQ-QLHHPAILPHPMYIAAHGASLHCFPNSQQVFYDGLGVVPKFEDMV 132

Query: 129 YYAGVCSSNRYHHQYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL 164
           YY GVCS NRY  Q G EDE+  LNWQR+IK D +K+QKLDLSLHL
Sbjct: 133 YYGGVCSYNRY--QCG-EDEEHVLNWQRSIKKDKEKEQKLDLSLHL 169

[Close]

BLAST of Cp4.1LG15g01200 vs. ExPASy TrEMBL
Match: A0A6J1HVN7 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111467088 PE=4 SV=1)

HSP 1 Score: 295 bits (755), Expect = 1.78e-100
Identity = 147/166 (88.55%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MKHQHNNLSNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDY 60
           MKH+ NNLSNSPA++E P RIFPCLFCSRKF +SQALGGHQNAHKKERTAARKAKRISDY
Sbjct: 1   MKHEQNNLSNSPAMEEIPSRIFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY 60

Query: 61  APSESPSPSSSSSSSSVFAATHHQTHHPGPYPHPMYIANAANLHCFPNNPPLFYEHIGYY 120
           A SESPSPSSSSSSS VFAATHHQTHHPG YPHPMYIANAANLHCFPNNPPLFYEH+GYY
Sbjct: 61  AASESPSPSSSSSSS-VFAATHHQTHHPGLYPHPMYIANAANLHCFPNNPPLFYEHMGYY 120

Query: 121 AGVCSSNRYHH--QYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL 164
            GVCSSNRYHH  QYGVEDEQ  LNWQRNIKND KK+QKLDLSLHL
Sbjct: 121 GGVCSSNRYHHHHQYGVEDEQNVLNWQRNIKNDKKKEQKLDLSLHL 165

[Close]

BLAST of Cp4.1LG15g01200 vs. ExPASy TrEMBL
Match: A0A6J1ETH7 (protein LATE FLOWERING OS=Cucurbita moschata OX=3662 GN=LOC111437406 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 9.12e-56
Identity = 107/166 (64.46%), Postives = 119/166 (71.69%), Query Frame = 0


Query: 9   SNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSP 68
           S+S  ++ETP RIFPCLFCSRKF TSQALGGHQNAHKKERTA RKAKR+SDY  S S S 
Sbjct: 13  SSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRLSDY--SSSSSS 72

Query: 69  SSSSSSSSVFAATHHQTHHPGPYPHPMYIA-NAANLHCFPNNPPLFYEHIG--------- 128
           S SS   SVFA    Q HHP   PHP+YIA + ANLHCFPNN  +FY+ +G         
Sbjct: 73  SLSSRPLSVFAGNQ-QLHHPAILPHPVYIAAHGANLHCFPNNQQVFYDGLGVVPKFEDMV 132

Query: 129 YYAGVCSSNRYHHQYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL 164
           YY GVCS NRY  Q G EDE   LNWQR+IK D +K+QKLDLSLHL
Sbjct: 133 YYGGVCSYNRY--QCG-EDEDHVLNWQRSIKKDKEKEQKLDLSLHL 172

[Close]

BLAST of Cp4.1LG15g01200 vs. ExPASy TrEMBL
Match: A0A5A7VIQ7 (Protein LATE FLOWERING-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002620 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 1.60e-54
Identity = 101/159 (63.52%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 14  IQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSPSSSSS 73
           ++ETP R+FPCLFCSRKF +SQALGGHQNAHKKERTAARKAKRI DY+ S  PSP S+ +
Sbjct: 1   MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSP-PSPFSAPT 60

Query: 74  SSSVFAATHHQTHHPGPYPHPMYIA-NAANLHCFPNNPPLFYEHIGYYAGVCSSNRYHHQ 133
           S  VFAA+  Q H  G  PHP+YIA + ANLHCFPNN  L YE++ +  GVCSSNRYH  
Sbjct: 61  SL-VFAASQQQHHPAGLLPHPVYIATHGANLHCFPNNQQLLYENMVFCGGVCSSNRYH-- 120

Query: 134 YGVEDEQKALNWQRNIKND-------NKKQQKLDLSLHL 164
              +DE+  LNW+RNIKND        +K+QKLDLSLHL
Sbjct: 121 ---QDEENLLNWERNIKNDLSRINHDKEKEQKLDLSLHL 152

[Close]

BLAST of Cp4.1LG15g01200 vs. ExPASy TrEMBL
Match: A0A1S3BIU8 (protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 3.64e-54
Identity = 101/159 (63.52%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 14  IQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSPSSSSS 73
           ++ETP R+FPCLFCSRKF +SQALGGHQNAHKKERTAARKAKRI DY+ S  PSP S+ +
Sbjct: 27  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSP-PSPFSAPT 86

Query: 74  SSSVFAATHHQTHHPGPYPHPMYIA-NAANLHCFPNNPPLFYEHIGYYAGVCSSNRYHHQ 133
           S  VFAA+  Q H  G  PHP+YIA + ANLHCFPNN  L YE++ +  GVCSSNRYH  
Sbjct: 87  SL-VFAASQQQHHPAGLLPHPVYIATHGANLHCFPNNQQLLYENMVFCGGVCSSNRYH-- 146

Query: 134 YGVEDEQKALNWQRNIKND-------NKKQQKLDLSLHL 164
              +DE+  LNW+RNIKND        +K+QKLDLSLHL
Sbjct: 147 ---QDEENLLNWERNIKNDLSRINHDKEKEQKLDLSLHL 178

[Close]

BLAST of Cp4.1LG15g01200 vs. ExPASy TrEMBL
Match: A0A6J1K4H5 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111491609 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 8.40e-54
Identity = 105/166 (63.25%), Postives = 119/166 (71.69%), Query Frame = 0


Query: 9   SNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSP 68
           S+S  ++ETP RIFPCLFCSRKF TSQALGGHQNAHKKERTA RKAKRISDY+ S     
Sbjct: 107 SSSVEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRISDYSSS----- 166

Query: 69  SSSSSSSSVFAATHHQTHHPGPYPHPMYIA-NAANLHCFPNNPPLFYEHIG--------- 128
           S+SS   SVFA    Q HHP   PHPMYIA +  NLHCFPN+  +FY+ +G         
Sbjct: 167 STSSRPLSVFAGNQ-QLHHPAILPHPMYIAAHGPNLHCFPNSQQVFYDGLGVVPKFEDMV 226

Query: 129 YYAGVCSSNRYHHQYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL 164
           YY GVCS NRY  Q G EDE+  LNWQR+IK D +K+QKLDLSLHL
Sbjct: 227 YYGGVCSYNRY--QCG-EDEENVLNWQRSIKKDKEKEQKLDLSLHL 263

[Close]

BLAST of Cp4.1LG15g01200 vs. TAIR 10
Match: AT5G48890.1 (C2H2-like zinc finger protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 0


Query: 20  RIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSPSSSSSSSSVFA 79
           RIFPCLFCSRKFH+SQALGGHQNAHKKERTAAR+AKR  D+      + +    +  VF 
Sbjct: 33  RIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFV-----NNNDFLHTLPVFL 92

Query: 80  ATHHQTHHPGPYPHPMYIANAANLHCFPNNPP--LFYEHIGYYAGVCSSNRYHH---QYG 139
           ++  Q HH     +P     +A++ CFP   P    ++  G +  + +S++       Y 
Sbjct: 93  SSPSQ-HHLTILGYPA----SASVACFPTVHPDHPIFKSSGSHVVLATSHQGRDCKGGYC 152

Query: 140 VEDEQKALNWQRNIKNDNK-KQQKLDLSLHL 165
            +     L+   N+ N +K K Q LDLSLHL
Sbjct: 153 CQQRVDILDHHYNVVNSDKGKDQCLDLSLHL 173

[Close]

BLAST of Cp4.1LG15g01200 vs. TAIR 10
Match: AT1G24625.1 (zinc finger protein 7 )

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-10
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 16  ETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSESPSPSSSSSSS 75
           E  PR+F C +C RKF++SQALGGHQNAHK+ERT A++A  +          P + +SSS
Sbjct: 53  EANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMF-GHHHRPYTYTSSS 112

Query: 76  SVFAATHHQTHHPGPYPHPMYIANAANLHCFPNNPPLFYEH 117
               A     HH    P P+ ++   +   F N  PLF+++
Sbjct: 113 LGMQAHSGLLHHTLSQPQPL-VSRFHHQGYFGNTVPLFFDY 151

[Close]

BLAST of Cp4.1LG15g01200 vs. TAIR 10
Match: AT5G14010.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-10
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 20 RIFPCLFCSRKFHTSQALGGHQNAHKKERTAARK 54
          R+FPC +C RKF+TSQALGGHQNAHK+ER AAR+
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69

[Close]

BLAST of Cp4.1LG15g01200 vs. TAIR 10
Match: AT5G57520.1 (zinc finger protein 2 )

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-10
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 1   MKHQHNNLSNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAK---RI 60
           M    ++ +NS +  E  PR+F C +C RKF++SQALGGHQNAHK ERT A+K++   R 
Sbjct: 32  MSSSSSSSTNSSSCLE-QPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELFRS 91

Query: 61  SDYAPSESPSPSS 71
           S+   S+ P P S
Sbjct: 92  SNTVDSDQPYPFS 103

[Close]

BLAST of Cp4.1LG15g01200 vs. TAIR 10
Match: AT5G01860.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 9   SNSPAIQETPPRIFPCLFCSRKFHTSQALGGHQNAHKKERTAARKAKRISDYAPSES--- 68
           + S    E   R+F C FC ++F TSQALGGHQNAHK+ER+ A++ K I    P  S   
Sbjct: 54  NESSTRNEAKARVFACTFCKKEFSTSQALGGHQNAHKQERSLAKRRKEIEINYPELSIYS 113

Query: 69  ---PSPSSSSSSSSVF 79
              PS  S SSSSS +
Sbjct: 114 QYPPSGLSFSSSSSQY 129

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g01200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKA9	4.4e-14	41.72	Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1	[more]
Q39266	4.2e-09	39.60	Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1	[more]
Q9FFX4	5.5e-09	76.47	Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1	[more]
Q39261	7.2e-09	47.95	Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1	[more]
Q42485	1.0e-07	50.72	Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1	[more]

BLAST of Cp4.1LG15g01200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511523.1	1.47e-117	100.00	protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967643.1	3.68e-100	88.55	protein LATE FLOWERING-like [Cucurbita maxima]	[more]
KAG6571570.1	4.39e-58	83.33	hypothetical protein SDJN03_28298, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931139.1	1.88e-55	64.46	protein LATE FLOWERING [Cucurbita moschata]	[more]
KAG6606329.1	9.85e-55	63.25	Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036...	[more]

BLAST of Cp4.1LG15g01200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVN7	1.78e-100	88.55	protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111467088 PE=4 SV=...	[more]
A0A6J1ETH7	9.12e-56	64.46	protein LATE FLOWERING OS=Cucurbita moschata OX=3662 GN=LOC111437406 PE=4 SV=1	[more]
A0A5A7VIQ7	1.60e-54	63.52	Protein LATE FLOWERING-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S3BIU8	3.64e-54	63.52	protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1	[more]
A0A6J1K4H5	8.40e-54	63.25	protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111491609 PE=4 SV=...	[more]

BLAST of Cp4.1LG15g01200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48890.1	3.1e-15	41.72	C2H2-like zinc finger protein	[more]
AT1G24625.1	3.0e-10	39.60	zinc finger protein 7	[more]
AT5G14010.1	3.9e-10	76.47	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G57520.1	5.1e-10	47.95	zinc finger protein 2	[more]
AT5G01860.1	3.3e-09	47.37	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 1..76 e-value: 4.0E-6 score: 28.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..87
None	No IPR available	PANTHER	PTHR45730:SF80	PROTEIN LATE FLOWERING	coord: 15..164
None	No IPR available	PANTHER	PTHR45730	ZINC FINGER PROTEIN JAGGED	coord: 15..164
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 24..44
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 22..49 score: 10.803371
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 18..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g01200.1	Cp4.1LG15g01200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane