Cp4.1LG15g00980 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g00980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG15: 783921 .. 785768 (+)
RNA-Seq Expression	Cp4.1LG15g00980
Synteny	Cp4.1LG15g00980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAATGTGTACAAACTCCATTGTTGTATAATCAAAACTTGCAAGCAGAATGATCCTCGCTCTCTCCGTAGCCTCCTTCTTTCCTGTGCTGCTGCAGCTCCCGAAAGCTTATCTTATGCTCGCTATGTATTCTCTCGGATTCCTTCTCCAGATACCTTCGCTTACAACACCATCATACGAGCACATTCTCACTATTTTCCTTCTCATTCTTTGTCCTGTTTCTCTTCTATGCGGTGCAATGGCGTCCCCTGTGATCATTTCACATTCCCATTTGTTCTCAAGGCATGTTCTCGATTGCAAATGGATCTTCACTTGCATTCCCTTATTGTTAAGTATGGTTTGGACTCTGATATTTTTGTGCAGAATTCGTTGATGAGTGTTTATGGTTGCTGTGGGTCTGTTGAGATTGCAGTCAAGGTGTTTGATGAAATGTCTGAGAGAGATTCTGTTTCTTGGTCTACTGTTATTGTTTCTTTTGTTAATAATGGCTATGCATCTGAGGCTTTGGCCTTGTTTAAGGCAATGCAGCTGGAAGATAAAGTAGTTCCTGATGAGGTAACCATGCTCAGTGTGATATCTGCGATCTCGCACTTGGGAGCATTAGAATTGGGTCGTTGGGTTCGGATGTTTATCGACAAGCTTGGCTTGGAAATTTCTGTTGCTTTGGGCACTGCTCTTATTGATATGTTCTCCAGATGTGGCTCCATTGATGAATCAGTTGTAGTATTTGAAGAGATGGCGGTGAGGAATGTGTTGACATGGACCGCGCTGATAAACGGGTTTGCAGTCCACGGTCGCAGTAGGGAGGCTTTGGCAGTGTTCCACAGCATGAGGAATTCAGGGGTACAGCCAGATTATATAACCTTTTCTAGTGTCTTAGTAGCTTGTAGCCATGGCGGTCTTGTAAGAGAAGGTCGGGATATTTTCGAAAGCATTTCGAAGGATTATAAGATGGTTCCTTATCTAGAGCATTATGGCTGCATGGTTGATCTTCTTGGCCGTGCAGGGCTGCTGAATGAAGCTTACGAATTTGTCGAAAGAATGCCAATGAAGCCGAATTCAATCATCTGGAGGACCCTTCTCGGAGCATGTGCGAATCACAACGATCTCGATATAGCTGAGAAGGTGAAGGCGAAGATCTCTGAGCTAAACTCGTCGCACGATGGCGATTTTGTGCTTCTATCCAATGTGTATGGAGCAGCTGGTAGATGGGTAGAGAAGACATCGGTGAGGAGTTGGATGAGAAGCAAAAGAATAGGCAAAGAACCTGGCTGTAGTTTGATTAATATAGACCAAGCGACTCACGAGTTTGTTTCTGGGGACGATTCTCATCCACAGTCCGAGGAGATAACGAAGTTCTTGAGCTTGATTATTGGGAATCTAAGAAACAGCGGTTACACGCCTCGCACGGAAAATGTACTACACGATATCGACGAGGAAGAAAGAGAGCATTCCTTAAGTTATCACAGTGAGAAATTAGCCGTGGCTTTTGCTCTTCTTAGTTTAAAGGATAAAAGGACGATAAGGGTCATGAAGAATCTTAGAATTTGTCATGACTGTCATTCGTTTATGAAACATATTTCAGACAGGTATGAGAGGAAGATAATCATTCGGGATCGCAATCGGTTTCATCATTTTGATAAAGGATCATGTTCATGTCATGATTATTGGTGAAATTTCTCCCTTGAGTTGTTCCCTCTTCCCATTTATCTGTTCTTCAACTACGCCAATCCTTTAATGGTTATTACAATTTCATGAACTTCAATTATAAATCAGAACCAAGAATCAGCATATCACCGAATAGATGGTGATGTTTTCGACGTTGGACAGGTGAATATCATGTAA

mRNA sequence

ATGAATAATGTGTACAAACTCCATTGTTGTATAATCAAAACTTGCAAGCAGAATGATCCTCGCTCTCTCCGTAGCCTCCTTCTTTCCTGTGCTGCTGCAGCTCCCGAAAGCTTATCTTATGCTCGCTATGTATTCTCTCGGATTCCTTCTCCAGATACCTTCGCTTACAACACCATCATACGAGCACATTCTCACTATTTTCCTTCTCATTCTTTGTCCTGTTTCTCTTCTATGCGGTGCAATGGCGTCCCCTGTGATCATTTCACATTCCCATTTGTTCTCAAGGCATGTTCTCGATTGCAAATGGATCTTCACTTGCATTCCCTTATTGTTAAGTATGGTTTGGACTCTGATATTTTTGTGCAGAATTCGTTGATGAGTGTTTATGGTTGCTGTGGGTCTGTTGAGATTGCAGTCAAGAACCAAGAATCAGCATATCACCGAATAGATGGTGATGTTTTCGACGTTGGACAGGTGAATATCATGTAA

Coding sequence (CDS)

ATGAATAATGTGTACAAACTCCATTGTTGTATAATCAAAACTTGCAAGCAGAATGATCCTCGCTCTCTCCGTAGCCTCCTTCTTTCCTGTGCTGCTGCAGCTCCCGAAAGCTTATCTTATGCTCGCTATGTATTCTCTCGGATTCCTTCTCCAGATACCTTCGCTTACAACACCATCATACGAGCACATTCTCACTATTTTCCTTCTCATTCTTTGTCCTGTTTCTCTTCTATGCGGTGCAATGGCGTCCCCTGTGATCATTTCACATTCCCATTTGTTCTCAAGGCATGTTCTCGATTGCAAATGGATCTTCACTTGCATTCCCTTATTGTTAAGTATGGTTTGGACTCTGATATTTTTGTGCAGAATTCGTTGATGAGTGTTTATGGTTGCTGTGGGTCTGTTGAGATTGCAGTCAAGAACCAAGAATCAGCATATCACCGAATAGATGGTGATGTTTTCGACGTTGGACAGGTGAATATCATGTAA

Protein sequence

MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTIIRAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIFVQNSLMSVYGCCGSVEIAVKNQESAYHRIDGDVFDVGQVNIM

Homology

[Close]

BLAST of Cp4.1LG15g00980 vs. ExPASy Swiss-Prot
Match: Q9C6T2 (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.9e-16
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 22  SLRSLLLSCAAAAPE-SLSYARYVFSRIPSPDTFAYNTIIRAHSHYFPSHSLSCF-SSMR 81
           S  S+L  CA +  E S++YA  +F  I  P TF +NT+IR + +        CF + M 
Sbjct: 65  SASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMM 124

Query: 82  CNGVPCDHFTFPFVLKACSRLQM---DLHLHSLIVKYGLDSDIFVQNSLMSVYGCCGSVE 139
             G   D+FT+P +LKAC+RL+       +H  + K GL++D+FVQNSL+++YG CG +E
Sbjct: 125 QRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEME 184

[Close]

BLAST of Cp4.1LG15g00980 vs. ExPASy Swiss-Prot
Match: O49399 (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-15
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAA-AAPESLSYARYVFSRIPSPDTFAYNTI 60
           +  + + H  ++KT   +D  S   L+   A    P+++SYA  + +RI SP+ F +N++
Sbjct: 52  LTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSV 111

Query: 61  IRAHSH-YFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSR---LQMDLHLHSLIVKYGL 120
           IRA+++   P  +L+ F  M    V  D ++F FVLKAC+     +    +H L +K GL
Sbjct: 112 IRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGL 171

Query: 121 DSDIFVQNSLMSVYGCCGSVEIAVK 141
            +D+FV+N+L++VYG  G  EIA K
Sbjct: 172 VTDVFVENTLVNVYGRSGYFEIARK 196

[Close]

BLAST of Cp4.1LG15g00980 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           +  + + H  +I+T   +DP S   L    A ++  SL YAR VF  IP P++FA+NT+I
Sbjct: 43  LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102

Query: 61  RAH-SHYFPSHSLSCFSSMRCNGVPC--DHFTFPFVLKAC---SRLQMDLHLHSLIVKYG 120
           RA+ S   P  S+  F  M  +   C  + +TFPF++KA    S L +   LH + VK  
Sbjct: 103 RAYASGPDPVLSIWAFLDM-VSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 162

Query: 121 LDSDIFVQNSLMSVYGCCGSVEIAVK 141
           + SD+FV NSL+  Y  CG ++ A K
Sbjct: 163 VGSDVFVANSLIHCYFSCGDLDSACK 187

[Close]

BLAST of Cp4.1LG15g00980 vs. ExPASy Swiss-Prot
Match: Q9CA54 (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-14
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 6   KLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTIIRAHSH 65
           ++H   IK     D      L+L CA +  ++L YAR +    P PD F +NT++R +S 
Sbjct: 23  QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSE 82

Query: 66  Y-FPSHSLSCFSSMRCNG-VPCDHFTFPFVLKACSR---LQMDLHLHSLIVKYGLDSDIF 125
              P +S++ F  M   G V  D F+F FV+KA      L+    +H   +K+GL+S +F
Sbjct: 83  SDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLF 142

Query: 126 VQNSLMSVYGCCGSVEIAVK 141
           V  +L+ +YG CG VE A K
Sbjct: 143 VGTTLIGMYGGCGCVEFARK 162

[Close]

BLAST of Cp4.1LG15g00980 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           M  + ++H  +IKT   +D  +   +L  C  A+P  ++YA  VF+RI   + F +NTII
Sbjct: 38  MRELKQIHASLIKTGLISDTVTASRVLAFC-CASPSDMNYAYLVFTRINHKNPFVWNTII 97

Query: 61  RAHSH-YFPSHSLSCFSSMRCN--GVPCDHFTFPFVLKACSRL---QMDLHLHSLIVKYG 120
           R  S   FP  ++S F  M C+   V     T+P V KA  RL   +    LH +++K G
Sbjct: 98  RGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEG 157

Query: 121 LDSDIFVQNSLMSVYGCCG 134
           L+ D F++N+++ +Y  CG
Sbjct: 158 LEDDSFIRNTMLHMYVTCG 175

[Close]

BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match: XP_023553606.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292 bits (748), Expect = 8.41e-94
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII
Sbjct: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF
Sbjct: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 140
           VQNSLMSVYGCCGSVEIAVK
Sbjct: 121 VQNSLMSVYGCCGSVEIAVK 140

[Close]

BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match: KAG6571551.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283 bits (724), Expect = 2.65e-90
Identity = 135/140 (96.43%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLHCCIIKTCKQ+DPRSLRSLLLSCAAAAPESLS+ARYVFSRIPSPDTFAYNTII
Sbjct: 1   MNNVYKLHCCIIKTCKQHDPRSLRSLLLSCAAAAPESLSHARYVFSRIPSPDTFAYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAHSH+FPSHSLSCFSSMRCNGVPCD+FTFPFVLKAC+RLQMDLHLHSLIVKYGLDSDIF
Sbjct: 61  RAHSHFFPSHSLSCFSSMRCNGVPCDNFTFPFVLKACARLQMDLHLHSLIVKYGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 140
           VQNSLMSVYGCCGSVEIAVK
Sbjct: 121 VQNSLMSVYGCCGSVEIAVK 140

[Close]

BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match: KAG7011296.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283 bits (724), Expect = 3.35e-90
Identity = 135/140 (96.43%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLHCCIIKTCKQ+DPRSLRSLLLSCAAAAPESLS+ARYVFSRIPSPDTFAYNTII
Sbjct: 1   MNNVYKLHCCIIKTCKQHDPRSLRSLLLSCAAAAPESLSHARYVFSRIPSPDTFAYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAHSH+FPSHSLSCFSSMRCNGVPCD+FTFPFVLKAC+RLQMDLHLHSLIVKYGLDSDIF
Sbjct: 61  RAHSHFFPSHSLSCFSSMRCNGVPCDNFTFPFVLKACARLQMDLHLHSLIVKYGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 140
           VQNSLMSVYGCCGSVEIAVK
Sbjct: 121 VQNSLMSVYGCCGSVEIAVK 140

[Close]

BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match: XP_022963775.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita moschata])

HSP 1 Score: 283 bits (724), Expect = 3.35e-90
Identity = 135/140 (96.43%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLHCCIIKTCKQ+DPRSLRSLLLSCAAAAPESLS+ARYVFSRIPSPDTFAYNTII
Sbjct: 1   MNNVYKLHCCIIKTCKQHDPRSLRSLLLSCAAAAPESLSHARYVFSRIPSPDTFAYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAHSH+FPSHSLSCFSSMRCNGVPCD+FTFPFVLKAC+RLQMDLHLHSLIVKYGLDSDIF
Sbjct: 61  RAHSHFFPSHSLSCFSSMRCNGVPCDNFTFPFVLKACARLQMDLHLHSLIVKYGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 140
           VQNSLMSVYGCCGSVEIAVK
Sbjct: 121 VQNSLMSVYGCCGSVEIAVK 140

[Close]

BLAST of Cp4.1LG15g00980 vs. NCBI nr
Match: XP_022967226.1 (pentatricopeptide repeat-containing protein At5g48910-like [Cucurbita maxima])

HSP 1 Score: 281 bits (720), Expect = 1.33e-89
Identity = 135/140 (96.43%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSY RYVFSRIPSPDTFAYNTII
Sbjct: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYVRYVFSRIPSPDTFAYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           R HSHYFPSHSLS FSSMRCNGVPCDHFTFPFVLKAC+RLQ DLHLHSLIVKYGLDSDIF
Sbjct: 61  RVHSHYFPSHSLSYFSSMRCNGVPCDHFTFPFVLKACARLQTDLHLHSLIVKYGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 140
           VQNSLMSVYGCCGSVEIAVK
Sbjct: 121 VQNSLMSVYGCCGSVEIAVK 140

[Close]

BLAST of Cp4.1LG15g00980 vs. ExPASy TrEMBL
Match: A0A6J1HIY8 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita moschata OX=3662 GN=LOC111463965 PE=3 SV=1)

HSP 1 Score: 283 bits (724), Expect = 1.62e-90
Identity = 135/140 (96.43%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLHCCIIKTCKQ+DPRSLRSLLLSCAAAAPESLS+ARYVFSRIPSPDTFAYNTII
Sbjct: 1   MNNVYKLHCCIIKTCKQHDPRSLRSLLLSCAAAAPESLSHARYVFSRIPSPDTFAYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           RAHSH+FPSHSLSCFSSMRCNGVPCD+FTFPFVLKAC+RLQMDLHLHSLIVKYGLDSDIF
Sbjct: 61  RAHSHFFPSHSLSCFSSMRCNGVPCDNFTFPFVLKACARLQMDLHLHSLIVKYGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 140
           VQNSLMSVYGCCGSVEIAVK
Sbjct: 121 VQNSLMSVYGCCGSVEIAVK 140

[Close]

BLAST of Cp4.1LG15g00980 vs. ExPASy TrEMBL
Match: A0A6J1HRF3 (pentatricopeptide repeat-containing protein At5g48910-like OS=Cucurbita maxima OX=3661 GN=LOC111466823 PE=3 SV=1)

HSP 1 Score: 281 bits (720), Expect = 6.46e-90
Identity = 135/140 (96.43%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSY RYVFSRIPSPDTFAYNTII
Sbjct: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYVRYVFSRIPSPDTFAYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           R HSHYFPSHSLS FSSMRCNGVPCDHFTFPFVLKAC+RLQ DLHLHSLIVKYGLDSDIF
Sbjct: 61  RVHSHYFPSHSLSYFSSMRCNGVPCDHFTFPFVLKACARLQTDLHLHSLIVKYGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 140
           VQNSLMSVYGCCGSVEIAVK
Sbjct: 121 VQNSLMSVYGCCGSVEIAVK 140

[Close]

BLAST of Cp4.1LG15g00980 vs. ExPASy TrEMBL
Match: A0A6J1DN44 (pentatricopeptide repeat-containing protein At4g21065-like OS=Momordica charantia OX=3673 GN=LOC111022757 PE=3 SV=1)

HSP 1 Score: 239 bits (610), Expect = 1.75e-73
Identity = 115/140 (82.14%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVYKLHC IIKT KQND   LRSLLLSCAAAAP+S+SYAR +FSRIPSPDTF+YNTII
Sbjct: 1   MNNVYKLHCFIIKTGKQNDLLYLRSLLLSCAAAAPKSVSYARSIFSRIPSPDTFSYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           R H+H+FPSHSLS FS+MRC+GVP D+FTFPFVLKAC+RLQ+DLHLHSLIVK+G DSDIF
Sbjct: 61  RIHAHFFPSHSLSYFSTMRCHGVPLDNFTFPFVLKACARLQIDLHLHSLIVKHGFDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 140
           VQN+LMSVYGCCGSVE+A+K
Sbjct: 121 VQNALMSVYGCCGSVELALK 140

[Close]

BLAST of Cp4.1LG15g00980 vs. ExPASy TrEMBL
Match: A0A0A0LC76 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G611320 PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 2.11e-71
Identity = 114/140 (81.43%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MNNVY+LHC IIK+ KQNDP SLR+LLLSC AAAPESLSYARYVFSRIPSPDT AYNTII
Sbjct: 1   MNNVYRLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           R+HS +FPSHSL  F SMR NG+P D+FTFPFVLKACSRLQ++LHLHSLIVKYGLDSDIF
Sbjct: 61  RSHSRFFPSHSLFYFFSMRSNGIPLDNFTFPFVLKACSRLQINLHLHSLIVKYGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 140
           VQN+L+ VYG CGS+E+AVK
Sbjct: 121 VQNALICVYGYCGSLEMAVK 140

[Close]

BLAST of Cp4.1LG15g00980 vs. ExPASy TrEMBL
Match: A0A5A7T8N1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00490 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 1.97e-68
Identity = 111/140 (79.29%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           MN+VYKLHC IIK+ KQ DP SLR+LLLSC A APESLSY RYVFSRIPSPDTFA NTII
Sbjct: 1   MNSVYKLHCYIIKSGKQTDPLSLRTLLLSCVATAPESLSYTRYVFSRIPSPDTFACNTII 60

Query: 61  RAHSHYFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSRLQMDLHLHSLIVKYGLDSDIF 120
           R+HSH FPSHSLS F +MR NG+P D+FTFPFVLKACSRLQ++LHLHSLIVK+GLDSDIF
Sbjct: 61  RSHSHLFPSHSLSYFFAMRSNGIPFDNFTFPFVLKACSRLQINLHLHSLIVKHGLDSDIF 120

Query: 121 VQNSLMSVYGCCGSVEIAVK 140
           VQN+L+ VYG CGS+E+AVK
Sbjct: 121 VQNALICVYGYCGSLEMAVK 140

[Close]

BLAST of Cp4.1LG15g00980 vs. TAIR 10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 5.6e-17
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 22  SLRSLLLSCAAAAPE-SLSYARYVFSRIPSPDTFAYNTIIRAHSHYFPSHSLSCF-SSMR 81
           S  S+L  CA +  E S++YA  +F  I  P TF +NT+IR + +        CF + M 
Sbjct: 65  SASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMM 124

Query: 82  CNGVPCDHFTFPFVLKACSRLQM---DLHLHSLIVKYGLDSDIFVQNSLMSVYGCCGSVE 139
             G   D+FT+P +LKAC+RL+       +H  + K GL++D+FVQNSL+++YG CG +E
Sbjct: 125 QRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEME 184

[Close]

BLAST of Cp4.1LG15g00980 vs. TAIR 10
Match: AT4G18840.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-16
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAA-AAPESLSYARYVFSRIPSPDTFAYNTI 60
           +  + + H  ++KT   +D  S   L+   A    P+++SYA  + +RI SP+ F +N++
Sbjct: 52  LTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSV 111

Query: 61  IRAHSH-YFPSHSLSCFSSMRCNGVPCDHFTFPFVLKACSR---LQMDLHLHSLIVKYGL 120
           IRA+++   P  +L+ F  M    V  D ++F FVLKAC+     +    +H L +K GL
Sbjct: 112 IRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGL 171

Query: 121 DSDIFVQNSLMSVYGCCGSVEIAVK 141
            +D+FV+N+L++VYG  G  EIA K
Sbjct: 172 VTDVFVENTLVNVYGRSGYFEIARK 196

[Close]

BLAST of Cp4.1LG15g00980 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 8.1e-16
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           +  + + H  +I+T   +DP S   L    A ++  SL YAR VF  IP P++FA+NT+I
Sbjct: 43  LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102

Query: 61  RAH-SHYFPSHSLSCFSSMRCNGVPC--DHFTFPFVLKAC---SRLQMDLHLHSLIVKYG 120
           RA+ S   P  S+  F  M  +   C  + +TFPF++KA    S L +   LH + VK  
Sbjct: 103 RAYASGPDPVLSIWAFLDM-VSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 162

Query: 121 LDSDIFVQNSLMSVYGCCGSVEIAVK 141
           + SD+FV NSL+  Y  CG ++ A K
Sbjct: 163 VGSDVFVANSLIHCYFSCGDLDSACK 187

[Close]

BLAST of Cp4.1LG15g00980 vs. TAIR 10
Match: AT1G74630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 6   KLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTIIRAHSH 65
           ++H   IK     D      L+L CA +  ++L YAR +    P PD F +NT++R +S 
Sbjct: 23  QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSE 82

Query: 66  Y-FPSHSLSCFSSMRCNG-VPCDHFTFPFVLKACSR---LQMDLHLHSLIVKYGLDSDIF 125
              P +S++ F  M   G V  D F+F FV+KA      L+    +H   +K+GL+S +F
Sbjct: 83  SDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLF 142

Query: 126 VQNSLMSVYGCCGSVEIAVK 141
           V  +L+ +YG CG VE A K
Sbjct: 143 VGTTLIGMYGGCGCVEFARK 162

[Close]

BLAST of Cp4.1LG15g00980 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 0


Query: 1   MNNVYKLHCCIIKTCKQNDPRSLRSLLLSCAAAAPESLSYARYVFSRIPSPDTFAYNTII 60
           M  + ++H  +IKT   +D  +   +L  C  A+P  ++YA  VF+RI   + F +NTII
Sbjct: 38  MRELKQIHASLIKTGLISDTVTASRVLAFC-CASPSDMNYAYLVFTRINHKNPFVWNTII 97

Query: 61  RAHSH-YFPSHSLSCFSSMRCN--GVPCDHFTFPFVLKACSRL---QMDLHLHSLIVKYG 120
           R  S   FP  ++S F  M C+   V     T+P V KA  RL   +    LH +++K G
Sbjct: 98  RGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEG 157

Query: 121 LDSDIFVQNSLMSVYGCCG 134
           L+ D F++N+++ +Y  CG
Sbjct: 158 LEDDSFIRNTMLHMYVTCG 175

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g00980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6T2	7.9e-16	39.34	Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX...	[more]
O49399	5.1e-15	35.17	Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX...	[more]
O82380	1.1e-14	37.67	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q9CA54	4.3e-14	35.71	Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX...	[more]
Q9SJG6	1.6e-13	34.53	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG15g00980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553606.1	8.41e-94	100.00	pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp...	[more]
KAG6571551.1	2.65e-90	96.43	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG7011296.1	3.35e-90	96.43	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022963775.1	3.35e-90	96.43	pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita moschata]	[more]
XP_022967226.1	1.33e-89	96.43	pentatricopeptide repeat-containing protein At5g48910-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG15g00980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HIY8	1.62e-90	96.43	pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita moschata...	[more]
A0A6J1HRF3	6.46e-90	96.43	pentatricopeptide repeat-containing protein At5g48910-like OS=Cucurbita maxima O...	[more]
A0A6J1DN44	1.75e-73	82.14	pentatricopeptide repeat-containing protein At4g21065-like OS=Momordica charanti...	[more]
A0A0A0LC76	2.11e-71	81.43	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G6113...	[more]
A0A5A7T8N1	1.97e-68	79.29	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG15g00980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31920.1	5.6e-17	39.34	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18840.1	3.6e-16	35.17	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G29760.1	8.1e-16	37.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G74630.1	3.1e-15	35.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G42920.1	1.2e-14	34.53	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 7..148 e-value: 6.0E-10 score: 41.1
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 2..140
None	No IPR available	PANTHER	PTHR47924:SF2	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 2..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g00980.1	Cp4.1LG15g00980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding