Cp4.1LG15g00520 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g00520
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc transporter 5
Location	Cp4.1LG15: 300299 .. 300772 (-)
RNA-Seq Expression	Cp4.1LG15g00520
Synteny	Cp4.1LG15g00520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCGGCTCGAATTCGCATACACATTAGCAGCATTATTGTTCGTTTTAGCTCTGATGATACCCGAGATAGAGGCGCAAGCATGGTCATACCCTCCAAAACCCCTTTGTTCTTCACAGTTTGCGCTCGCAAGCTACGCTTGTGCGAGGCTGCCTCTCAACCCAGAGCCCCTCCCAATTTCTCCGCCTCCTTCGCCCCATAGGCATGGGCATGACCACGACCACGACCACGACCACGACCACGACCACGGGCACGGACATCACCGTGGGCATCACCATGGGCACCACCACCGCAGCCGCTCGCCCATCGAAGAGGAATGTTGCCGATGGGCAAGGCAAGTGGATAGCGAATGCGTGTGCGATGCCTTAGCTCATTTGGCTAACTTCATGGTGCGACCCTCGCATGTGTTTACCGTGGCCATAACAGAAGACTGTGTTGTCACTTACTCGTGCATTGGACGAATTAAGATTTGA

mRNA sequence

ATGGGGCGGCTCGAATTCGCATACACATTAGCAGCATTATTGTTCGTTTTAGCTCTGATGATACCCGAGATAGAGGCGCAAGCATGGTCATACCCTCCAAAACCCCTTTGTTCTTCACAGTTTGCGCTCGCAAGCTACGCTTGTGCGAGGCTGCCTCTCAACCCAGAGCCCCTCCCAATTTCTCCGCCTCCTTCGCCCCATAGGCATGGGCATGACCACGACCACGACCACGACCACGACCACGACCACGGGCACGGACATCACCGTGGGCATCACCATGGGCACCACCACCGCAGCCGCTCGCCCATCGAAGAGGAATGTTGCCGATGGGCAAGGCAAGTGGATAGCGAATGCGTGTGCGATGCCTTAGCTCATTTGGCTAACTTCATGGTGCGACCCTCGCATGTGTTTACCGTGGCCATAACAGAAGACTGTGTTGTCACTTACTCGTGCATTGGACGAATTAAGATTTGA

Coding sequence (CDS)

ATGGGGCGGCTCGAATTCGCATACACATTAGCAGCATTATTGTTCGTTTTAGCTCTGATGATACCCGAGATAGAGGCGCAAGCATGGTCATACCCTCCAAAACCCCTTTGTTCTTCACAGTTTGCGCTCGCAAGCTACGCTTGTGCGAGGCTGCCTCTCAACCCAGAGCCCCTCCCAATTTCTCCGCCTCCTTCGCCCCATAGGCATGGGCATGACCACGACCACGACCACGACCACGACCACGACCACGGGCACGGACATCACCGTGGGCATCACCATGGGCACCACCACCGCAGCCGCTCGCCCATCGAAGAGGAATGTTGCCGATGGGCAAGGCAAGTGGATAGCGAATGCGTGTGCGATGCCTTAGCTCATTTGGCTAACTTCATGGTGCGACCCTCGCATGTGTTTACCGTGGCCATAACAGAAGACTGTGTTGTCACTTACTCGTGCATTGGACGAATTAAGATTTGA

Protein sequence

MGRLEFAYTLAALLFVLALMIPEIEAQAWSYPPKPLCSSQFALASYACARLPLNPEPLPISPPPSPHRHGHDHDHDHDHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRWARQVDSECVCDALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI

Homology

[Close]

BLAST of Cp4.1LG15g00520 vs. NCBI nr
Match: KAG6571480.1 (hypothetical protein SDJN03_28208, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011243.1 hypothetical protein SDJN02_26146, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301 bits (770), Expect = 1.01e-102
Identity = 151/157 (96.18%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MGRLEFAYTLAALLFVLALMIPEIEAQAWSYPPKPLCSSQFALASYACARLPLNPEPLPI 60
           MGRLEFAYTLAALLFVLALMIPEI+AQAWSYPPKPLCSSQFALASYACARLPLNPEPLPI
Sbjct: 1   MGRLEFAYTLAALLFVLALMIPEIDAQAWSYPPKPLCSSQFALASYACARLPLNPEPLPI 60

Query: 61  SPPPSPHRHGHDHDHDHDHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRWARQVDSECVC 120
           SPP SPH HGHDHDH+HDHDH  GHGHHRGHHHGHHHRSRSPIEEECCRWARQVDSECVC
Sbjct: 61  SPPSSPHGHGHDHDHNHDHDH--GHGHHRGHHHGHHHRSRSPIEEECCRWARQVDSECVC 120

Query: 121 DALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 157
           DALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI
Sbjct: 121 DALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 155

[Close]

BLAST of Cp4.1LG15g00520 vs. NCBI nr
Match: XP_022967638.1 (uncharacterized protein LOC111467082 [Cucurbita maxima])

HSP 1 Score: 270 bits (691), Expect = 1.01e-90
Identity = 138/162 (85.19%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 1   MGRLEFAYTLAALLFVLALMIPEIEAQAWSYPPKPLCSSQFALASYACARLPLNPEPLPI 60
           MGRLEFAY  AALLFVLALM P+IEAQAWSYPPKPLCSSQFALASYACARLPLN EPLPI
Sbjct: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPI 60

Query: 61  SPPPSPH-----RHGHDHDHDHDHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRWARQVD 120
           SPPPSPH     RHGH+H          GHGHHRGHHHGHHHR+RSPIEEECCRWARQVD
Sbjct: 61  SPPPSPHVEEGHRHGHEH----------GHGHHRGHHHGHHHRNRSPIEEECCRWARQVD 120

Query: 121 SECVCDALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 157
           +ECVCDALAHLANFMVRPSHVFTVAITEDC+VTYSCIGRIKI
Sbjct: 121 NECVCDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 152

[Close]

BLAST of Cp4.1LG15g00520 vs. NCBI nr
Match: XP_022155619.1 (uncharacterized protein LOC111022709 [Momordica charantia])

HSP 1 Score: 206 bits (524), Expect = 3.53e-65
Identity = 109/167 (65.27%), Postives = 125/167 (74.85%), Query Frame = 0


Query: 1   MGRLEFAYTLAALLFVLALMIPEIEAQAWSYP-----PKPLCSSQFALASYACARLPLNP 60
           MGR + A+ LAAL  ++  +IP++E QAWS P     P+PLCSSQFALASYACARLPLNP
Sbjct: 1   MGRFKIAHLLAALCVLV--LIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNP 60

Query: 61  EPLPISPPPSP-----HRHGHDHDHDHDHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRW 120
           EP+PI PPPSP     H HGH H H H      GHGH   HHH   H + SP+ EECCRW
Sbjct: 61  EPIPILPPPSPVDEDGHGHGHGHGHGH------GHGHQHQHHHRRRHHTHSPVAEECCRW 120

Query: 121 ARQVDSECVCDALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 157
           AR+VDSECVCDAL HLANF++RPSH FTVAIT+DC+VTYSC GRIKI
Sbjct: 121 AREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI 159

[Close]

BLAST of Cp4.1LG15g00520 vs. NCBI nr
Match: ONH93644.1 (hypothetical protein PRUPE_8G243700 [Prunus persica] >VVA14005.1 PREDICTED: histidine-rich [Prunus dulcis])

HSP 1 Score: 145 bits (366), Expect = 4.99e-41
Identity = 80/158 (50.63%), Postives = 101/158 (63.92%), Query Frame = 0


Query: 14  LFVLALM-IPEIEAQAWSYPPKPLCSSQFALASYACARLPLNPEPLPISPPPSP------ 73
           LFV +L+ +P++EAQ    PP+PLC+SQFALA+YACA LP  P PLP  P P P      
Sbjct: 11  LFVASLLFVPKMEAQRLFPPPRPLCASQFALANYACALLPFTPTPLPTPPSPPPSSPPDD 70

Query: 74  -------HRHGHDHDHDHDHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRWARQVDSECV 133
                  H H H H H H H H H HGH+R  H GHH  S SP E+ CCRW  Q+D+ECV
Sbjct: 71  DGGQEQEHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAEDNCCRWLTQLDNECV 130

Query: 134 CDALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 157
           C+ L HL  F+++P+H +TVA+ E C VTY+C   I+I
Sbjct: 131 CELLVHLPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 168

[Close]

BLAST of Cp4.1LG15g00520 vs. NCBI nr
Match: XP_021805755.1 (zinc transporter 5 [Prunus avium])

HSP 1 Score: 144 bits (364), Expect = 1.06e-40
Identity = 82/160 (51.25%), Postives = 104/160 (65.00%), Query Frame = 0


Query: 14  LFVLALM-IPEIEAQAWSYPPKPLCSSQFALASYACARLPLNP--EPLPISPPPSP---- 73
           LFV +L+ +P++EAQ    PP+PLC+SQFALA+YACA LP  P   P P SPPPS     
Sbjct: 11  LFVASLIFVPKMEAQRIFPPPRPLCASQFALANYACALLPFTPTPHPTPPSPPPSSPPDD 70

Query: 74  -----HRHGHDHDHDHDHDHDHGHGHHRGH----HHGHHHRSRSPIEEECCRWARQVDSE 133
                H H H+H+H H H H HGHGH  GH    H GHH    SP E+ CCRW  Q+D+E
Sbjct: 71  DGGEEHEHEHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPEPSPAEDNCCRWLTQLDNE 130

Query: 134 CVCDALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 157
           CVC+ L HL  F+++P+H +TVA+ E C VTY+C   I+I
Sbjct: 131 CVCELLVHLPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 170

[Close]

BLAST of Cp4.1LG15g00520 vs. ExPASy TrEMBL
Match: A0A6J1HVN1 (uncharacterized protein LOC111467082 OS=Cucurbita maxima OX=3661 GN=LOC111467082 PE=4 SV=1)

HSP 1 Score: 270 bits (691), Expect = 4.91e-91
Identity = 138/162 (85.19%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 1   MGRLEFAYTLAALLFVLALMIPEIEAQAWSYPPKPLCSSQFALASYACARLPLNPEPLPI 60
           MGRLEFAY  AALLFVLALM P+IEAQAWSYPPKPLCSSQFALASYACARLPLN EPLPI
Sbjct: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWSYPPKPLCSSQFALASYACARLPLNLEPLPI 60

Query: 61  SPPPSPH-----RHGHDHDHDHDHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRWARQVD 120
           SPPPSPH     RHGH+H          GHGHHRGHHHGHHHR+RSPIEEECCRWARQVD
Sbjct: 61  SPPPSPHVEEGHRHGHEH----------GHGHHRGHHHGHHHRNRSPIEEECCRWARQVD 120

Query: 121 SECVCDALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 157
           +ECVCDALAHLANFMVRPSHVFTVAITEDC+VTYSCIGRIKI
Sbjct: 121 NECVCDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 152

[Close]

BLAST of Cp4.1LG15g00520 vs. ExPASy TrEMBL
Match: A0A6J1DQT3 (uncharacterized protein LOC111022709 OS=Momordica charantia OX=3673 GN=LOC111022709 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 1.71e-65
Identity = 109/167 (65.27%), Postives = 125/167 (74.85%), Query Frame = 0


Query: 1   MGRLEFAYTLAALLFVLALMIPEIEAQAWSYP-----PKPLCSSQFALASYACARLPLNP 60
           MGR + A+ LAAL  ++  +IP++E QAWS P     P+PLCSSQFALASYACARLPLNP
Sbjct: 1   MGRFKIAHLLAALCVLV--LIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNP 60

Query: 61  EPLPISPPPSP-----HRHGHDHDHDHDHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRW 120
           EP+PI PPPSP     H HGH H H H      GHGH   HHH   H + SP+ EECCRW
Sbjct: 61  EPIPILPPPSPVDEDGHGHGHGHGHGH------GHGHQHQHHHRRRHHTHSPVAEECCRW 120

Query: 121 ARQVDSECVCDALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 157
           AR+VDSECVCDAL HLANF++RPSH FTVAIT+DC+VTYSC GRIKI
Sbjct: 121 AREVDSECVCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI 159

[Close]

BLAST of Cp4.1LG15g00520 vs. ExPASy TrEMBL
Match: A0A5E4EE79 (PREDICTED: histidine-rich OS=Prunus dulcis OX=3755 GN=ALMOND_2B027823 PE=4 SV=1)

HSP 1 Score: 145 bits (366), Expect = 2.42e-41
Identity = 80/158 (50.63%), Postives = 101/158 (63.92%), Query Frame = 0


Query: 14  LFVLALM-IPEIEAQAWSYPPKPLCSSQFALASYACARLPLNPEPLPISPPPSP------ 73
           LFV +L+ +P++EAQ    PP+PLC+SQFALA+YACA LP  P PLP  P P P      
Sbjct: 11  LFVASLLFVPKMEAQRLFPPPRPLCASQFALANYACALLPFTPTPLPTPPSPPPSSPPDD 70

Query: 74  -------HRHGHDHDHDHDHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRWARQVDSECV 133
                  H H H H H H H H H HGH+R  H GHH  S SP E+ CCRW  Q+D+ECV
Sbjct: 71  DGGQEQEHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAEDNCCRWLTQLDNECV 130

Query: 134 CDALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 157
           C+ L HL  F+++P+H +TVA+ E C VTY+C   I+I
Sbjct: 131 CELLVHLPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 168

[Close]

BLAST of Cp4.1LG15g00520 vs. ExPASy TrEMBL
Match: A0A251N5W9 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G243700 PE=4 SV=1)

HSP 1 Score: 145 bits (366), Expect = 2.42e-41
Identity = 80/158 (50.63%), Postives = 101/158 (63.92%), Query Frame = 0


Query: 14  LFVLALM-IPEIEAQAWSYPPKPLCSSQFALASYACARLPLNPEPLPISPPPSP------ 73
           LFV +L+ +P++EAQ    PP+PLC+SQFALA+YACA LP  P PLP  P P P      
Sbjct: 11  LFVASLLFVPKMEAQRLFPPPRPLCASQFALANYACALLPFTPTPLPTPPSPPPSSPPDD 70

Query: 74  -------HRHGHDHDHDHDHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRWARQVDSECV 133
                  H H H H H H H H H HGH+R  H GHH  S SP E+ CCRW  Q+D+ECV
Sbjct: 71  DGGQEQEHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAEDNCCRWLTQLDNECV 130

Query: 134 CDALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 157
           C+ L HL  F+++P+H +TVA+ E C VTY+C   I+I
Sbjct: 131 CELLVHLPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 168

[Close]

BLAST of Cp4.1LG15g00520 vs. ExPASy TrEMBL
Match: M5W0Q1 (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021373mg PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 3.19e-41
Identity = 77/152 (50.66%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 19  LMIPEIEAQAWSYPPKPLCSSQFALASYACARLPLNPEPLPISPPPSP------------ 78
           L +P++EAQ    PP+PLC+SQFALA+YACA LP  P PLP  P P P            
Sbjct: 3   LFVPKMEAQRLFPPPRPLCASQFALANYACALLPFTPTPLPTPPSPPPSSPPDDDGGQEQ 62

Query: 79  -HRHGHDHDHDHDHDHDHGHGHHRGHHHGHHHRSRSPIEEECCRWARQVDSECVCDALAH 138
            H H H H H H H H H HGH+R  H GHH  S SP E+ CCRW  Q+D+ECVC+ L H
Sbjct: 63  EHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAEDNCCRWLTQLDNECVCELLVH 122

Query: 139 LANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 157
           L  F+++P+H +TVA+ E C VTY+C   I+I
Sbjct: 123 LPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 154

[Close]

BLAST of Cp4.1LG15g00520 vs. TAIR 10
Match: AT3G63095.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-24
Identity = 74/221 (33.48%), Postives = 96/221 (43.44%), Query Frame = 0


Query: 32  PPKPLCSSQFALASYACARLPLN--PEPLPISPPPSP----------HRHGHDHDHDHDH 91
           PP+PLC+SQ+ALA+YAC+RLP++  P P PI+PPP+P          H H HDHDHDHDH
Sbjct: 28  PPRPLCASQYALANYACSRLPMHTVPPPAPITPPPAPIAPPPPEHDHHDHDHDHDHDHDH 87

Query: 92  ----------------------------------------------------DHDHGHGH 151
                                                               DHDH H H
Sbjct: 88  DDDHDDDDDHDHDDDHDHDHDDDHDHDDDDRDRDRDRDRDRDRDRDHDRAHDDHDHNHDH 147

Query: 152 -------------------------------HRGHHHGHHHRSRSP--IEEECCRWARQV 156
                                          H  HHH HHHR R     ++ECC+W +Q+
Sbjct: 148 DNDHNDNNHDHNHDADHHNNDDNSHDQHRRRHHRHHHRHHHRHREETFAQQECCKWLKQM 207

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g00520 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g00520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571480.1	1.01e-102	96.18	hypothetical protein SDJN03_28208, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022967638.1	1.01e-90	85.19	uncharacterized protein LOC111467082 [Cucurbita maxima]	[more]
XP_022155619.1	3.53e-65	65.27	uncharacterized protein LOC111022709 [Momordica charantia]	[more]
ONH93644.1	4.99e-41	50.63	hypothetical protein PRUPE_8G243700 [Prunus persica] >VVA14005.1 PREDICTED: hist...	[more]
XP_021805755.1	1.06e-40	51.25	zinc transporter 5 [Prunus avium]	[more]

BLAST of Cp4.1LG15g00520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVN1	4.91e-91	85.19	uncharacterized protein LOC111467082 OS=Cucurbita maxima OX=3661 GN=LOC111467082...	[more]
A0A6J1DQT3	1.71e-65	65.27	uncharacterized protein LOC111022709 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5E4EE79	2.42e-41	50.63	PREDICTED: histidine-rich OS=Prunus dulcis OX=3755 GN=ALMOND_2B027823 PE=4 SV=1	[more]
A0A251N5W9	2.42e-41	50.63	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G243700 PE=4 SV=1	[more]
M5W0Q1	3.19e-41	50.66	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021373m...	[more]

BLAST of Cp4.1LG15g00520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63095.1	3.5e-24	33.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 37..151 e-value: 0.0059 score: 25.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..98
None	No IPR available	PANTHER	PTHR34377:SF6	SUBFAMILY NOT NAMED	coord: 15..155
None	No IPR available	PANTHER	PTHR34377	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 15..155
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 95..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g00520.1	Cp4.1LG15g00520.1	mRNA