Cp4.1LG15g00340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g00340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG15: 280291 .. 284157 (+)
RNA-Seq ExpressionCp4.1LG15g00340
SyntenyCp4.1LG15g00340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTCGAGAAGTCTACTACCCGACGTGGCTCGCCTGACCCCAAAAGTCTTCTTGAGGATGTTCATATTATGATATTGAGAATAAGAACACTGCATTGTTTAATATTATTCCGAAAAGGAGAGGGAATAACAAAAAGAGACCTTTTCAGAGTGGAAGCAACACACTAAGTGACAATGGAGTTGCAGGCCATTTTCATTTTGGCTGTGCTCTGCGCACTCCCATCACAACCTCAAGAGCCAGAGATGGATCCATTTTAGCAAGTGCAGAGATAGCCGGCTTGCAGACTGAAAACCAGAAGAAAATTCAAGCTGGATCAATAGAAAAAGTAGGCATCTTTTTCAGATATTCAAATCCTTAAAAGTAATAACACATGGGTTTTCGTCGCAATAACGCAACCCTAAGGGACGAAGGTGTTAGGACAACAAATCTTTGTGTATCTTCACAATATTAAAATATTGCGTTAATGGTTGTGCTTTCAAACCTAACCTCAGTCCACTTAGTTCCGTTTTTTAATGGAAATGTAGTTCTTACCTATATGCTCTTGATCTCTCTCATTTTTAATAAATGGGGTGTCTCTAACAATTTTCGTCCTAAACAAAGGGCCACCGAACCTTCCTTCAAATGGTTTTCTATTCAAGTTCTAGTTAGTAGAGTCCAACTATAGATATTATTGCATGTGACAATCTTACAACTTTTGCTTCACGTAAAGTCTTTGAAGCCCGTCACAGTTAGTAAAGGTAGTTTTTGTTTTCAGTTGAGCCTTGACTTGAAACACTTGATTTTGAAGGAGAAAGACTAATATCCTATTTACCGAGTGAAAGAAACGAGAGGAAAGAAAAGAGCTACTTTTACCTCGTGAAAGAAGGGAGACGAAAGAAGTCGAGGTTCAGGTTTTCGATTGAGTCTTTCACTTTTTTCTTATGATTTAGAATTGTAAAGGAGAGAAGACGAAGATAGAGTGAAAGAACAATTTTCAACAAAGAAGGAGATGAGTGAAGCAATGAGACCGAAGGGAGAGGAGCTATTATCTATGTAATTGAAGAAGCTATAGAAGAGCACCACCAAAGTTCAGGTCCCAACACATGGGGGATTAATTCAATAGCAAAGATCGTGAATCAAGCAATTGAATCAGGAAGTGCTACTCCACTACTCAAGATAAGGGTTCATGATTTAGTTTTGAGATATTACAACATTTTACATTCAACAACTCCCTCACTAACCTTATAATGCTTTGAAAAAACTGTCAAGATAGTTGTGAATGAGGTACAAAGCATATCACTTAAGATTTGAGATAAAAGTGAACGAGGAAGTGGGGAAGTATTGTTTCCTTAAACGATAGAACTTGAACTTGAGTGCTTTCCAAAGGCAACAATCCCTAGTCTACTGCCGGTTAGTGAGATCTATCAACCTCTGGCTATGACAATAGCTTTGACTTGACTATTCTTCTGAAGTAAAATCGTGAATAGAACTCGTTGTTTTCCCCTTCGAAAACTAAGACAAAGCTGTGACCTTAAGGAAGAGACCAATGGCAAAGGAATCAGTCATAGCCAGAGAAAAAAAACAGAGGCAGCGAGACCGACAAGTTCTTGTTTGATCCGCCACCCAAGTAAACACATAAGACATACATCAAAAATCGTTTAGAACAATTACTAGAATTGGACAAAAGCAAGTAAATAGATTGGGATGATTGGTTGTCCATGTCCACTATGGTGCTGAGTGTTCCAAACATTGGAGTCAAGTCAGTTTTGTGCAGCTCCAAAATTTTCACTCAGGGTGAGATCTCACAGCAACTGGGAAAGAGAACAGAACATTTTTTATAAGACTGTGGAAATCTCTCCTTACCAGGCGCGTTTTAAAAACCTTGAGAGAAAATTCAAAAGGGAAAGCCCAAAGACCACACTATCTGCTAGCAGTGGGCTTAAACTGTTACATAGACAGGGAGAGTTCAACAACCACTAGAAAGAAATATGATTTCCACAACATATCTCCTTATCCTAATTCCTTCGCCTATGGACATGCTTCCTGCAGCAAAAATCTCACAACCTCAGACTGCACCTCATGGTCTTTGTGCTGCTAAGACCAACATGTTGGGATCGTGTCAAATGAGGATTGGTGGTCGTGCAGTGCTCCATGACTGTGCAGTTAGGTATGAGGAATACCCATTTGATGATTAGAGACTAGTGTGGTGAATGTTATTGCTTCTTTGAAATGCACTTGTTTCACTTCCTTGTCTCTTTTCTCCTGTCTTTTCAATCTTAAATGAAGATATCAGGACGCTGATTGGTGCTTTCCTATGACATGATGCTCGAAAAAGCAAGAGGAAGTAGTGTCAGATGCATTGTTGTTAAATCAAAGCAGAAGTGTCGAGTTCAATGTTGGAGTTCCTATAGTCTCACAAAACCAGAATATTCAGAATTTCGAACAAAAGGCAACACTAGTCATCATTGAAGGAGCGGTCTTTTTCTTATTTCGCATGCAATACCCAGATGGGTACGTAAAGACAGAAAGAATGTAACAGTCCAAGCCCACCGCTAGCAAATATTGTACGCTTTGGCCCGTTACGTATCGTTGTCAGCCTCACGGTTCTAAAATATGTTTACTAGGGAAAGGTTTTCACACCCTTATAAAGAATGCTTTGTTCCCCTCTCCAACCAATGTGGGATCTCACAATCCACTCCTCTTGGGGGACAGTGTCCTTACTGGCACATCGTCCAGTGTCTGGCTTTGATACCATTTGTAACAGCTCAAGCCCACCACTAGCAGATATTGTCTTCTTTGGCCCGTTACGTATTGTCATCAACCTCACGGTTTTAAAACGCATCTATTAGGGAGAGGTTTCCACACCCTTATAAATAATATTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACAAAGAAAGCTTCAGAAGCTCTGGCTTGTTGAGGATTGTTGGTGGGAGTCCTATATCGGCTAATTAAGGAATACATCTCCATTGGTATAAAGCCTTTTGGAGAAACTAAAAGCAAAGCCATGAGAGCTTGCACTCAAAGTGGACAACATCATACCATTATAGAGGTCTGTGATTCTAACATTGTTTTGATCGTGTTGTTCAACAATTCAGCCATAAACACTTTCATTGCTGTCTCTCCGGTCCATCTTTTTTGTCCCTACGGATGAACCAACAATAAAAGGAAACTTGAAGACAAATCAAACGATGGAGGTGCTTTTCAAACCCTAAATGGGCTATAACGGATTGTAGTTTGGTTATTCCTTCTCACCATTTATCTTAAGATCAACACCAAAAGTTGGCATGTGAAGATATTAAAAAAGGAAAAAAAGGGGAGCATCTAATGGCATTAAAAGCTAGTTCTAAAAAGCTCATAGCTCCAAAATGGATATTGATATCATAACCGGAGTGGAAGGAGGATGCAAGTGGCATCAATCGAGCCGGGTGTGGGCGTGCAGCTAGACCACCGAATAATGTTCAACAAAGATATAACACATTATCATGTAAAATACTCCGTCTAAGTCAACTTCTTCCGACATTGTGATGATAAGGCCAATAAGTCCCATCACCCAAATAACATTTGATCCTATCTAACATAATTATCAACTCTTTCAACAGACAAGCCTTTGTTCCTGTCAATCTAATCTTCTAAAGAGAGTATTTAGTCTCCAAGAAAGCTCATATGCAGGGGATCTGATTCAGTTCATTTCTATACAAAGCCGCATTGTCACAAACCCACCACATTAAACAAGTAAAACACCTTATTTCTTTTAAACAATTCGTCGAACAGGTAATCCGCATACTTCAAAGCTTATAGTTAGATTTACAGGAGTCAAAACAAGCACATTCAGAAACTGCCGGAGAGCAGGCACTAA

mRNA sequence

ATGAAGAATAAGAACACTGCATTGTTTAATATTATTCCGAAAAGGAGAGGGAATAACAAAAAGAGACCTTTTCAGAGTGGAAGCAACACACTAAGTGACAATGGAGTTGCAGGCCATTTTCATTTTGGCTGTGCTCTGCGCACTCCCATCACAACCTCAAGAGCCAGAGATGGATCCATTTTAGCAAGTGCAGAGATAGCCGGCTTGCAGACTGAAAACCAGAAGAAAATTCAAGCTGGATCAATAGAAAAAAGTCCAACTATAGATATTATTGCATGTGACAATCTTACAACTTTTGCTTCACGTAAAGTCTTTGAAGCCCGTCACACAAAAATCTCACAACCTCAGACTGCACCTCATGGTCTTTGTGCTGCTAAGACCAACATGTTGGGATCGTGTCAAATGAGGATTGGTGGTCGTGCAGTGCTCCATGACTGTGCAGTTAGGAGTCAAAACAAGCACATTCAGAAACTGCCGGAGAGCAGGCACTAA

Coding sequence (CDS)

ATGAAGAATAAGAACACTGCATTGTTTAATATTATTCCGAAAAGGAGAGGGAATAACAAAAAGAGACCTTTTCAGAGTGGAAGCAACACACTAAGTGACAATGGAGTTGCAGGCCATTTTCATTTTGGCTGTGCTCTGCGCACTCCCATCACAACCTCAAGAGCCAGAGATGGATCCATTTTAGCAAGTGCAGAGATAGCCGGCTTGCAGACTGAAAACCAGAAGAAAATTCAAGCTGGATCAATAGAAAAAAGTCCAACTATAGATATTATTGCATGTGACAATCTTACAACTTTTGCTTCACGTAAAGTCTTTGAAGCCCGTCACACAAAAATCTCACAACCTCAGACTGCACCTCATGGTCTTTGTGCTGCTAAGACCAACATGTTGGGATCGTGTCAAATGAGGATTGGTGGTCGTGCAGTGCTCCATGACTGTGCAGTTAGGAGTCAAAACAAGCACATTCAGAAACTGCCGGAGAGCAGGCACTAA

Protein sequence

MKNKNTALFNIIPKRRGNNKKRPFQSGSNTLSDNGVAGHFHFGCALRTPITTSRARDGSILASAEIAGLQTENQKKIQAGSIEKSPTIDIIACDNLTTFASRKVFEARHTKISQPQTAPHGLCAAKTNMLGSCQMRIGGRAVLHDCAVRSQNKHIQKLPESRH
Homology
[Close]
BLAST of Cp4.1LG15g00340 vs. NCBI nr
Match: XP_038887019.1 (antifungal protein ginkbilobin-like protein [Benincasa hispida])

HSP 1 Score: 51.6 bits (122), Expect = 4.74e-05
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 122 LCAAKTNMLGSCQMRIGGRAVLHDCAVR 149
           L AAKTNMLG+CQM IGGRAVLHDC +R
Sbjct: 79  LGAAKTNMLGTCQMSIGGRAVLHDCMIR 106

[Close]
BLAST of Cp4.1LG15g00340 vs. NCBI nr
Match: XP_022931011.1 (antifungal protein ginkbilobin-2-like [Cucurbita moschata])

HSP 1 Score: 50.8 bits (120), Expect = 9.24e-05
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 122 LCAAKTNMLGSCQMRIGGRAVLHDCAVR 149
           L AAKTNMLGSCQMRIG RAVL+DC++R
Sbjct: 79  LGAAKTNMLGSCQMRIGARAVLNDCSIR 106

[Close]
BLAST of Cp4.1LG15g00340 vs. NCBI nr
Match: KAG6606427.1 (Antifungal protein ginkbilobin-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036367.1 Antifungal protein ginkbilobin-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 50.8 bits (120), Expect = 1.35e-04
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 122 LCAAKTNMLGSCQMRIGGRAVLHDCAVR 149
           L AAKTNMLGSCQMRIG RAVL+DC++R
Sbjct: 99  LGAAKTNMLGSCQMRIGARAVLNDCSIR 126

[Close]
BLAST of Cp4.1LG15g00340 vs. NCBI nr
Match: XP_031742893.1 (antifungal protein ginkbilobin-like protein [Cucumis sativus])

HSP 1 Score: 49.3 bits (116), Expect = 3.50e-04
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 124 AAKTNMLGSCQMRIGGRAVLHDCAVR 149
           AAK NMLGSCQMRIGGR+VL+DC +R
Sbjct: 81  AAKNNMLGSCQMRIGGRSVLNDCTIR 106

[Close]
BLAST of Cp4.1LG15g00340 vs. NCBI nr
Match: KGN47889.1 (hypothetical protein Csa_003100 [Cucumis sativus])

HSP 1 Score: 49.3 bits (116), Expect = 5.07e-04
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 124 AAKTNMLGSCQMRIGGRAVLHDCAVR 149
           AAK NMLGSCQMRIGGR+VL+DC +R
Sbjct: 101 AAKNNMLGSCQMRIGGRSVLNDCTIR 126

[Close]
BLAST of Cp4.1LG15g00340 vs. ExPASy TrEMBL
Match: A0A6J1ESI5 (antifungal protein ginkbilobin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437337 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.47e-05
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 122 LCAAKTNMLGSCQMRIGGRAVLHDCAVR 149
           L AAKTNMLGSCQMRIG RAVL+DC++R
Sbjct: 79  LGAAKTNMLGSCQMRIGARAVLNDCSIR 106

[Close]
BLAST of Cp4.1LG15g00340 vs. ExPASy TrEMBL
Match: A0A0A0KGA2 (Gnk2-homologous domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G409950 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.46e-04
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 124 AAKTNMLGSCQMRIGGRAVLHDCAVR 149
           AAK NMLGSCQMRIGGR+VL+DC +R
Sbjct: 101 AAKNNMLGSCQMRIGGRSVLNDCTIR 126

[Close]
BLAST of Cp4.1LG15g00340 vs. ExPASy TrEMBL
Match: A0A803NRF4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.47e-04
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 122 LCAAKTNMLGSCQMRIGGRAVLHDCAVR 149
           L AAKT MLGSCQ RIG RAVLHDCA+R
Sbjct: 100 LGAAKTAMLGSCQNRIGARAVLHDCAIR 127

[Close]
BLAST of Cp4.1LG15g00340 vs. ExPASy TrEMBL
Match: A0A7J6E1A5 (Gnk2-homologous domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_019333 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.42e-04
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 122 LCAAKTNMLGSCQMRIGGRAVLHDCAVR 149
           L AAKT MLGSCQ RIG RAVLHDCA+R
Sbjct: 100 LGAAKTAMLGSCQNRIGARAVLHDCAIR 127

[Close]
BLAST of Cp4.1LG15g00340 vs. ExPASy TrEMBL
Match: A0A1U8JVQ2 (antifungal protein ginkbilobin-2-like OS=Gossypium hirsutum OX=3635 GN=LOC107910948 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.46e-04
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 122 LCAAKTNMLGSCQMRIGGRAVLHDCAVRSQNKH 154
           L AAKT ML +CQ RIG R+VLHDC +R QN H
Sbjct: 98  LGAAKTVMLATCQSRIGSRSVLHDCTIRQQNFH 130

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g00340 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g00340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887019.14.74e-0582.14antifungal protein ginkbilobin-like protein [Benincasa hispida][more]
XP_022931011.19.24e-0582.14antifungal protein ginkbilobin-2-like [Cucurbita moschata][more]
KAG6606427.11.35e-0482.14Antifungal protein ginkbilobin-like protein, partial [Cucurbita argyrosperma sub... [more]
XP_031742893.13.50e-0480.77antifungal protein ginkbilobin-like protein [Cucumis sativus][more]
KGN47889.15.07e-0480.77hypothetical protein Csa_003100 [Cucumis sativus][more]
BLAST of Cp4.1LG15g00340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ESI54.47e-0582.14antifungal protein ginkbilobin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437... [more]
A0A0A0KGA22.46e-0480.77Gnk2-homologous domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G40... [more]
A0A803NRF43.47e-0482.14Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6E1A54.42e-0482.14Gnk2-homologous domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_01... [more]
A0A1U8JVQ25.46e-0466.67antifungal protein ginkbilobin-2-like OS=Gossypium hirsutum OX=3635 GN=LOC107910... [more]
BLAST of Cp4.1LG15g00340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g00340.1Cp4.1LG15g00340.1mRNA