Cp4.1LG14g10030 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG14g10030
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionCotton fiber protein
LocationCp4.1LG14: 8486647 .. 8487054 (+)
RNA-Seq ExpressionCp4.1LG14g10030
SyntenyCp4.1LG14g10030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGGGGAAAATGGCAGAGAACGCAACGCCAATGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCTTCTGTCACGTTTGCCGGCCGCCTTCCCGGCGGATGCGGTCATTCGATTCCGACGGTCAGACGGCAGGGCTGAGGAGTATCTTGGGAGACGAAAGCATCATTGAGAAATGCTCTGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGTATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

mRNA sequence

ATGGAAAAGGGGAAAATGGCAGAGAACGCAACGCCAATGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCTTCTGTCACGTTTGCCGGCCGCCTTCCCGGCGGATGCGGTCATTCGATTCCGACGGTCAGACGGCAGGGCTGAGGAGTATCTTGGGAGACGAAAGCATCATTGAGAAATGCTCTGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGTATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

Coding sequence (CDS)

ATGGAAAAGGGGAAAATGGCAGAGAACGCAACGCCAATGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCTTCTGTCACGTTTGCCGGCCGCCTTCCCGGCGGATGCGGTCATTCGATTCCGACGGTCAGACGGCAGGGCTGAGGAGTATCTTGGGAGACGAAAGCATCATTGAGAAATGCTCTGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTGAAATTGAGGTACTATGGTATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA

Protein sequence

MEKGKMAENATPMVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDGQTAGLRSILGDESIIEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSPPFSSSIR
Homology
BLAST of Cp4.1LG14g10030 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250 bits (639), Expect = 1.68e-83
Identity = 125/130 (96.15%), Postives = 128/130 (98.46%), Query Frame = 0

Query: 6   MAENATPMVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDGQTAGLRSILGDESIIEK 65
           MAENATP+VLRMKKALTKLTAFVR CHV RPPSRRMRSFDSDG+TAGLRSILGDESI+EK
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60

Query: 66  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA 125
           CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA
Sbjct: 61  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA 120

Query: 126 RSPPFSSSIR 135
           RSPPFSSSIR
Sbjct: 121 RSPPFSSSIR 130

BLAST of Cp4.1LG14g10030 vs. NCBI nr
Match: KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (633), Expect = 1.38e-82
Identity = 124/130 (95.38%), Postives = 127/130 (97.69%), Query Frame = 0

Query: 6   MAENATPMVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDGQTAGLRSILGDESIIEK 65
           MAENATP+VLRMKKALTKLTAFVR CHV RPPSRRMRSFDSDG+TAGLRSILGDESI+EK
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60

Query: 66  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA 125
           CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKL YYGINSSEIDYEA
Sbjct: 61  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLMYYGINSSEIDYEA 120

Query: 126 RSPPFSSSIR 135
           RSPPFSSSIR
Sbjct: 121 RSPPFSSSIR 130

BLAST of Cp4.1LG14g10030 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144 bits (364), Expect = 1.27e-41
Identity = 75/127 (59.06%), Postives = 94/127 (74.02%), Query Frame = 0

Query: 6   MAENATPMVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDGQTAGLRSILGDESIIEK 65
           MA+  +P++ R+KK+  KLTAF+R C   R  SRR+RSF SD +TAGLRS L DE I+E 
Sbjct: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVEN 60

Query: 66  CSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEA 125
            SVRKLER  S+   + EDDVD+R+QIFID F RQL LERQISL+LRY  +NSSE + E 
Sbjct: 61  RSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEE 120

Query: 126 RSPPFSS 132
           +SPP+ S
Sbjct: 121 KSPPYPS 127

BLAST of Cp4.1LG14g10030 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 4.98e-41
Identity = 77/125 (61.60%), Postives = 91/125 (72.80%), Query Frame = 0

Query: 6   MAENATPMVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDGQTAGLRSILGDES-IIE 65
           MAE  +PM  R+KKAL KLTA VR C V R  S+R+ SFDSD +  G+R +L D+S I E
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 66  KCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYE 125
               RKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +YE
Sbjct: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120

Query: 126 ARSPP 129
             SPP
Sbjct: 121 QISPP 125

BLAST of Cp4.1LG14g10030 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 138 bits (347), Expect = 6.01e-39
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 0

Query: 6   MAENATPMVLRMKKALTKLTAFVRF----CHVCRPPSRRMRSFDSDGQTAGLRSILGDES 65
           MAE  +P++ R+KKA+ K+TA +R     C   R PS R+RSF    +T GLRS L DE 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 66  IIEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEI 125
           I E CS+R+LER  S R G+ EDDVD+R+QIFIDNF R+L LERQISL+LRYY INSS  
Sbjct: 61  IGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGT 120

Query: 126 DYEARSPP 129
           + E RSPP
Sbjct: 121 EDEERSPP 128

BLAST of Cp4.1LG14g10030 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 143 bits (360), Expect = 2.41e-41
Identity = 77/125 (61.60%), Postives = 91/125 (72.80%), Query Frame = 0

Query: 6   MAENATPMVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDGQTAGLRSILGDES-IIE 65
           MAE  +PM  R+KKAL KLTA VR C V R  S+R+ SFDSD +  G+R +L D+S I E
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 66  KCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYE 125
               RKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +YE
Sbjct: 61  NSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYE 120

Query: 126 ARSPP 129
             SPP
Sbjct: 121 QISPP 125

BLAST of Cp4.1LG14g10030 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 2.91e-39
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 0

Query: 6   MAENATPMVLRMKKALTKLTAFVRF----CHVCRPPSRRMRSFDSDGQTAGLRSILGDES 65
           MAE  +P++ R+KKA+ K+TA +R     C   R PS R+RSF    +T GLRS L DE 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 66  IIEKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEI 125
           I E CS+R+LER  S R G+ EDDVD+R+QIFIDNF R+L LERQISL+LRYY INSS  
Sbjct: 61  IGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGT 120

Query: 126 DYEARSPP 129
           + E RSPP
Sbjct: 121 EDEERSPP 128

BLAST of Cp4.1LG14g10030 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 3.34e-39
Identity = 76/125 (60.80%), Postives = 91/125 (72.80%), Query Frame = 0

Query: 6   MAENATPMVLRMKKALTKLTAFVRFCHVCRPPSRRMRSFDSDG-QTAGLRSILGDES-II 65
           MAE  +PM  R++KAL KL A +R C + R  SRR+ SFDSD  Q  G+R +L D+S I 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 66  EKCSVRKLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 125
           E   VRKLER  SSR G  E+DVDQRA+IFI+NFRRQL LERQISL+LRYY +NS E +Y
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 126 EARSP 128
           E RSP
Sbjct: 121 EQRSP 125

BLAST of Cp4.1LG14g10030 vs. ExPASy TrEMBL
Match: A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.18e-21
Identity = 61/123 (49.59%), Postives = 73/123 (59.35%), Query Frame = 0

Query: 13  MVLRMKKALTKLTAFVRFCHVCRPPS-RRMRSFDSDGQTAGLRSILGDESIIEKCSVRKL 72
           M LR+++ L KL AF+R C + R  S  R R+   D QTA                 R L
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA-----------------RNL 60

Query: 73  ERGESSRNGSCE---DDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSS--EIDYEAR 129
           ER  SSR  SCE   DDVD RA+IFI+NFRRQL LERQISL+LR YG+N++  E DYE  
Sbjct: 61  ERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEI 106

BLAST of Cp4.1LG14g10030 vs. ExPASy TrEMBL
Match: A0A2C9UBN9 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.79e-16
Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = 0

Query: 17  MKKALTKLTAFVRF-------CHVCRPPSRRMRSFDSDGQTAGLRSILGDESIIEKCSVR 76
           +K+A+ KL   + F         + R  SRR R   S     GL   + D    E   VR
Sbjct: 12  LKRAVKKLNFLLSFNLRRWRVASILRNVSRRRRRL-SFNDRLGLHGCIEDVESDENKRVR 71

Query: 77  KLERGESSRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDY 123
            L+R   +R+ + EDD+DQRA+IFI+NFRRQL+LERQISL+LRYY  NS   DY
Sbjct: 72  ALQR---TRSYASEDDIDQRAEIFIENFRRQLLLERQISLQLRYYRGNSFTRDY 121

BLAST of Cp4.1LG14g10030 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.3e-06
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 77  SRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSP 129
           S + S ++D+D +A++FI NF RQL +ERQISL+L+Y   N+   +Y  RSP
Sbjct: 81  SYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RSP 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7015798.11.68e-8396.15hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577759.11.38e-8295.38hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6596691.11.27e-4159.06hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0052985.14.98e-4161.60hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144... [more]
XP_022145292.16.01e-3957.81uncharacterized protein LOC111014780 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A5D3CHZ52.41e-4161.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1CW642.91e-3957.81uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A0A0L4Z83.34e-3960.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1[more]
A0A0A0L6A31.18e-2149.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1[more]
A0A2C9UBN93.79e-1644.74Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT5G57510.16.3e-0648.08unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 83..113
e-value: 9.5E-9
score: 34.7
NoneNo IPR availablePANTHERPTHR33098COTTON FIBER (DUF761)coord: 11..120
NoneNo IPR availablePANTHERPTHR33098:SF64OS08G0448100 PROTEINcoord: 11..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g10030.1Cp4.1LG14g10030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding