Cp4.1LG14g09180 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG14g09180
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG14: 7644443 .. 7647333 (-)
RNA-Seq ExpressionCp4.1LG14g09180
SyntenyCp4.1LG14g09180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCGTTCAAAAGAGTAAAAAAAATCACCATCGAATCACGGCGGCGAGGAAAGAGGATGGAAACGGCGACGATGGAGACGACGAAGAAAGCGGCCACTGGATTGAATTGCGAAGCCATGGATTGCTTGTCGGAAAGGCTTTCGTTGCAGGTAAAATCTTTACTGCCATGAATCCGTCTCAACGCAAGGCCATTCTGCTCGACCTTCGTTCTCGCGATGTCGCCGTGTTTCTTCGCCTCTCTCCCTCTCTCTATAACTCTGGATTTTTGCAACTTCTGGCATGGATTACTGTTGTATGTTGATTATTTCCCCCAAAGTTAAAAGAGCCTTAGATTAATTTATCGAATTCGAAGGAGAAAAAATTGAGGGATTTGAATGAGTAGTTTTGATATAGTGGGGAGATTTAATGGAAATTATCTGAATGCTGTGCCCTATGGTTCTGTTTCATAATCATTTAGCTTTTGGAAATTAAGTTCATAAACGCTACTTCCATCCATTCCATGAGTTTCTTTTCTTTGGTAATTATTTTGATTTTTATCCTTGGATGCTGCCTTGTTCTGTTCATTTAAATATTCTAATGTTTGTTGCTCCTCCAACTCTGATTGATGTAGAGCGTTATGGATCATAGTTGATATCCATTGAGCTCCATGAGTTTGGTGCTCTGAAGGATGATTATGAGATGAATTGGGCACATTAGATGAACTTCACTTTAGGCCAGTTATTGTGAAGAATAGGAGATTTGCATATCTGAATAAACTGATATGTGATGGCATGTACATCTTGGAGGATGCAATGAGGGGGAGAGAGCCTTTTTTGCACCATGAATACTTAGGGAAGTTTCAGGATCCAAGTGGGAGAGGAATGGCAAGACCAGGGGAGCGATGATGAGGAGATCAGAGGAAGCAATGTTGGTTGCTAAGATCATAGTAGAGCAATGTAGGTGCGAGATCCCACGTCGGTTGGAGAGGGGAACGATGAATTCCTTATACGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTTAAATCGTGAAGCTAACGACGATACGTAACGAGCCGAGGTAAATAAGCTTGCTAATGGAGCTCATTCCATTGATAGGTAATGATATTTGACTCTTTCATTTGTAGGTAACCAAGGCCATGGATGAACAGACAATAGTCAAGCTGTCGAGCGTGGGTTTGCTAGGGAGAGGTTTCCACACCTTTATGAAGAATGTTTTGTTCTCCTCTTCCACCAATGTGAGATCTCACAATCCACCCCCGTTCGAGGTCTAGCATCCTTGCTGGCACACCGCCTGGTGTCCACCCCCTTCGGGGCTCAGCGTCTTTGCCAGCACGCCACCCGGTGGAGGGTGGATTGTGAGATCCCATATCGGTTGGAGATGGGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTTAAAAATCGTGAAGCTGACGACGATACGTAACAAGCCGAGGTAAATAAGCTTGCTAATGGAGCTCATTCCATTGATAGGTAATGATATTTGACTCTTTCATTTGTAGGTAACCAGGGTTGAACTGACAATAGTCAAGTTGCCGAGGTGGGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAAAATGCTTTGTTCTCCTCTTCCACCGATGTGAGATCTCACAATCCACCCCCCTTTGAGGTCTAGTGTCCTCGTTGGCACTCGTTCTTCTCTCCAATTGATGTGTGATCTCACAATCCACCCCCCTTTGAGGTCTAGTGTCCTCGCTGGCACTCGTTCTTCTCTCCAATTGATGTGTGATCTCACAATCCACCTCCCTTCGGCACCTAACGTCCTTGCTGGCACACCGTCTGGTGTCCACCCCTTTCGGGGCTCAGTGTCTTTGCTGGCACGTCGCCCGGCGAAAGAGGGTGGATTGTGAGATCCCATATCGGTTGGAAAGAGGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAACACGTCTTAAAAACCTTGAGGAAAAGCTCAAGGAGGACAATATTTGCTAGCGGTGGGCTTGGACTGTTACAAAAATAGAATTTATAGGTCCGGCCACACCCTCACGGGGAAGAGAAAGACAAGCTGAGTAATACACTTTCTAGTTTCTATTAATGGTTCTCATCTATGATGCCAAATACTAAATATTGGGAAATTTTGTTAGCATAATAAGATGATTCTTTCAATTGCTTAATGTTTTTTCACCACATGCTACCTTTTGTTTCATTCTTATTACAAACTCTCAGCTCTTATTCAGATCACGAAACTGGAAAAAGACGAGATGATGTAAGTGCGAGCGAGCTGATGATGATCCGTGATGAGACGATGAATGCAATTAAAAGACTCGGCTGAACGATGTCGTAATCCTGGTAAGATTAAAAAATGATCTCTGTGCTAACTTTTAATGGGAAGGGTAGAGTTTCTTCGAGGAGTATGGGGATATAATTGTGTGCCACACCCCATGAGTTTGGTATTAGCTTTTTGCAGTTCCTTTAGCTTTTGTTTCTCAGAGAAGAAAAGAAGTTACTGAAATAAAAGGAGTCTTTCACTTTGACACAGGGAAATCCAGTAAACTCTGAGTTTCTAACTAGGTTCTCGTCAGGGAATAGCGGTTCAGGAAAGGAAATTGGGTTCCTGGTATTGGCATCTGCCTCAACTGAAACCTTGTAAGTTCTACTCGTGTTCTTTCTGTCTCATGAATATTTTTCCGTTTTTGAACTTAGTTTCTGAATGTGTGAATATTGAGCGGTAGAAGTAAGGAGATTTGAACGTCTGACTTCGAAGTCCGAAAAAAATGCAAGTTGACATCATTGTATAGCTATTTTTACTAGAAATGTTCATTTTACTTGCCGGGCCGGGAAGAAA

mRNA sequence

CACCGTTCAAAAGAGTAAAAAAAATCACCATCGAATCACGGCGGCGAGGAAAGAGGATGGAAACGGCGACGATGGAGACGACGAAGAAAGCGGCCACTGGATTGAATTGCGAAGCCATGGATTGCTTGTCGGAAAGGCTTTCGTTGCAGATCACGAAACTGGAAAAAGACGAGATGATGGAAATCCAGTAAACTCTGAGTTTCTAACTAGGTTCTCGTCAGGGAATAGCGGTTCAGGAAAGGAAATTGGGTTCCTGGTATTGGCATCTGCCTCAACTGAAACCTTGTAAGTTCTACTCGTGTTCTTTCTGTCTCATGAATATTTTTCCGTTTTTGAACTTAGTTTCTGAATGTGTGAATATTGAGCGGTAGAAGTAAGGAGATTTGAACGTCTGACTTCGAAGTCCGAAAAAAATGCAAGTTGACATCATTGTATAGCTATTTTTACTAGAAATGTTCATTTTACTTGCCGGGCCGGGAAGAAA

Coding sequence (CDS)

ATGGAAACGGCGACGATGGAGACGACGAAGAAAGCGGCCACTGGATTGAATTGCGAAGCCATGGATTGCTTGTCGGAAAGGCTTTCGTTGCAGATCACGAAACTGGAAAAAGACGAGATGATGGAAATCCAGTAA

Protein sequence

METATMETTKKAATGLNCEAMDCLSERLSLQITKLEKDEMMEIQ
Homology
[Close]
BLAST of Cp4.1LG14g09180 vs. NCBI nr
Match: XP_022923198.1 (uncharacterized protein LOC111430964 [Cucurbita moschata])

HSP 1 Score: 63.2 bits (152), Expect = 6.32e-11
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 1  METATMETTKKAATGLNCEAMDCLSERLSLQITK 34
          METATME T+KAATGLNCEAMDCLSERLSLQ+T+
Sbjct: 1  METATMEPTEKAATGLNCEAMDCLSERLSLQVTR 34

[Close]
BLAST of Cp4.1LG14g09180 vs. NCBI nr
Match: KAG7015691.1 (hypothetical protein SDJN02_23328, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.3 bits (142), Expect = 7.14e-10
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 1  METATMETTKKAATGLNCEAMDCLSERLSLQ 31
          METATME T+KAATGLNCEAMDCLSERLSLQ
Sbjct: 1  METATMEPTEKAATGLNCEAMDCLSERLSLQ 31

[Close]
BLAST of Cp4.1LG14g09180 vs. NCBI nr
Match: XP_022965225.1 (uncharacterized protein LOC111465143 isoform X2 [Cucurbita maxima])

HSP 1 Score: 57.4 bits (137), Expect = 5.89e-09
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1  METATMETTKKAATGLNCEAMDCLSERLSL 30
          METATMETT+KAA GLNCEAMDCLSERLSL
Sbjct: 13 METATMETTEKAAEGLNCEAMDCLSERLSL 42

[Close]
BLAST of Cp4.1LG14g09180 vs. NCBI nr
Match: XP_022965224.1 (uncharacterized protein LOC111465143 isoform X1 [Cucurbita maxima])

HSP 1 Score: 57.4 bits (137), Expect = 6.72e-09
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1  METATMETTKKAATGLNCEAMDCLSERLSL 30
          METATMETT+KAA GLNCEAMDCLSERLSL
Sbjct: 13 METATMETTEKAAEGLNCEAMDCLSERLSL 42

[Close]
BLAST of Cp4.1LG14g09180 vs. NCBI nr
Match: XP_038906003.1 (coiled-coil domain-containing protein 97 [Benincasa hispida] >XP_038906004.1 coiled-coil domain-containing protein 97 [Benincasa hispida])

HSP 1 Score: 46.6 bits (109), Expect = 3.97e-04
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 1  METATMETTKKAAT-GLNCEAMDCLSERLSLQ 31
          ME ATMET + AA  GL+CEAMDCLSERLSLQ
Sbjct: 1  MELATMETAEAAAAKGLSCEAMDCLSERLSLQ 32

[Close]
BLAST of Cp4.1LG14g09180 vs. ExPASy TrEMBL
Match: A0A6J1E8W5 (uncharacterized protein LOC111430964 OS=Cucurbita moschata OX=3662 GN=LOC111430964 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.06e-11
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 1  METATMETTKKAATGLNCEAMDCLSERLSLQITK 34
          METATME T+KAATGLNCEAMDCLSERLSLQ+T+
Sbjct: 1  METATMEPTEKAATGLNCEAMDCLSERLSLQVTR 34

[Close]
BLAST of Cp4.1LG14g09180 vs. ExPASy TrEMBL
Match: A0A6J1HN51 (uncharacterized protein LOC111465143 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465143 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.85e-09
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1  METATMETTKKAATGLNCEAMDCLSERLSL 30
          METATMETT+KAA GLNCEAMDCLSERLSL
Sbjct: 13 METATMETTEKAAEGLNCEAMDCLSERLSL 42

[Close]
BLAST of Cp4.1LG14g09180 vs. ExPASy TrEMBL
Match: A0A6J1HQE8 (uncharacterized protein LOC111465143 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465143 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.25e-09
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1  METATMETTKKAATGLNCEAMDCLSERLSL 30
          METATMETT+KAA GLNCEAMDCLSERLSL
Sbjct: 13 METATMETTEKAAEGLNCEAMDCLSERLSL 42

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g09180 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g09180 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923198.16.32e-1188.24uncharacterized protein LOC111430964 [Cucurbita moschata][more]
KAG7015691.17.14e-1093.55hypothetical protein SDJN02_23328, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022965225.15.89e-0993.33uncharacterized protein LOC111465143 isoform X2 [Cucurbita maxima][more]
XP_022965224.16.72e-0993.33uncharacterized protein LOC111465143 isoform X1 [Cucurbita maxima][more]
XP_038906003.13.97e-0478.13coiled-coil domain-containing protein 97 [Benincasa hispida] >XP_038906004.1 coi... [more]
BLAST of Cp4.1LG14g09180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E8W53.06e-1188.24uncharacterized protein LOC111430964 OS=Cucurbita moschata OX=3662 GN=LOC1114309... [more]
A0A6J1HN512.85e-0993.33uncharacterized protein LOC111465143 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HQE83.25e-0993.33uncharacterized protein LOC111465143 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Cp4.1LG14g09180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g09180.1Cp4.1LG14g09180.1mRNA