Cp4.1LG14g08490 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG14g08490
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptiontranscription initiation factor TFIID subunit 13
LocationCp4.1LG14: 6956169 .. 6961988 (-)
RNA-Seq ExpressionCp4.1LG14g08490
SyntenyCp4.1LG14g08490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATACAGAAGATTTGATTTTACGCTAGGGCTTACTCTTTCCAACACTGAATCTGCTGCAGACGGAGCGGCGATCGTCTCCGGTGTGCATTCGTTTTTATTACCTTCCTTTTATCTGATAATCAATCGTCGTTTCTGTCTCCATTTTTCTAGAATTGGTTCCTGGATCTTCCTTCTGTTGTGTGCCCTAGCGTTTATGCTTTTGTTATGGGTTCCATTTTGAAGATTTTTTATATCCGATCATCAGACGTTTCTTTCCCCATTTTTCTAGAATTGGTTCCTGGATCTTCCTTCTGTTAGTGATCAGTCTAATGTAGGTTATGATGGACCAGTGGATGTGGTCTGTAATTTATGATATATTTAGATGTTCGTTGATTTTGGATGTTGGTTCCTTTTGTTTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATTCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCTCTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCACTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCTCTTGGTATCCTCCTTTTGCTTGACGAGTCTTTTATTTGTGTTGGTTTGTAGTCAAATTTTGTTTCTCTTGGTATCCTCCTTTTGCTTTACAAGTCTGTTAGTGTGTATTTAGTATAAACCATCTGACGGTCAGTGAGGGCAGGGAATGAATTCAATCCATGGGGGTCATCTACCTAAGATTTAATATCCCACTAGCTTCTTTGACATCCAAATGCTAGAAACAAAATAACTTCATAACGGTGAGATCGCGTCTCGGTTGGAGAGGAGAACGAAGCATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAATCGTGAGGCTGACGACCATAAAAAATGGAGTGACTGTCCATTTGTATATTAGATTTGGGAAACAAAGTGACTGTCCATTTGTATATTAGATTTGGGAGTCAATGTGATAAGAAAATTGTCCCCTGACTAGTTAGTCCTTGAGGTGCCTACGGTAGAATACTGATTTTCAACTACTTGGCAACTACCCAATTTGAATTGGTTTTCATAGGTCCTCTAGTTCTCCGGAAACTGCATTAATTGGTCATTCTAATCCCCTATTTGGTATTTGGTATTTGTGCTGATCCTCTAAGATTTTGCAATGGTATACTTAATCATTTTTTTGGTTCATTAATAATTTTTTTTTTTTTTTTTTTTGATGCCAAATTTGGATGGAGGATATTATCCTTTGCCCTTTCTTTGCCCTTGTATCTAGAGGTGTTATTGTTGTGTTTGTGATTGATAAAAAATGCAAAAAGTCTGAAAAGATTTTAGTTTAGTTTGAATTAAGAAACATGGACCTAGACGCAGACATGGGATGTGGTCAACATGCAACCACATGCAACACGAACACAATGACAAGTTATTTTCTAAGCAATTTGGAGTTAGGACACAAAATTTGTTTGGCGGAAGTTTACAAGGGTCTCGTGCCTACAGTGTTTGACAAATGCTCTGAACATATTATATTTATGTTCAGACAAGTGCCCGCCACATGCCTACAGCGCTCAATGAGCGTTTGGCAGTTGTGGAATTCTTTACAAATATTTCTAACGTTAAGAGCGTTTGATGAATGTCACTGCAGAGATTATTTATGTGGTTTTATTTGATTTCGAGATTGGTCACTGCAGAGACAATCGGCTTGAAATTATTACGTTCTCGATCTGTTAATTGTGATTATATGTTATATTTATCGGATATTGGACTCCTTTTCTACTACTAGTGTAATGTTTATTTGGAGATTTGGAAGGATGTTTATCTCAAGAAATTCAAGGTCTTTTCCATTTATTTTCATGCCCCTTTGCTTCCCACTTTTGGGTTTATATAGTGGATACTTTTGGCTGGTCTTTTGTTGTGCCTCTCTACCGTTTTTGGCTGGTCTTTTGTTGTGCCTTTCTGCCTTTCTACCTGAAAATTTTGCAAATGTCTTTTGTCTCGAAAATGTTTTTGTGGGCTACCCTTTTTATGGTTCCAAGAAGATGTCGTGGCTTGCGTTTTCCTAGATTCTTTTGGAGAGATTCTTTTGGAGCGGAGAATTTGAGCAAAGAGTAGTTGGGGGGTTTATAGAATTTGAAAGTGAGAACTCCTTTGTTTGATGTAACTATTTGAGCCGGATGAAATGAACGTACGATTGTGAAAGGGGAGATCCTATAGTATCCTATCCAAAATTTTCTTTTGGTTGGCCCATAGCTAAAAATTACTTTCTTACGATTACGGGGTTGAGCGTAGTCTTTCATCATTAATTAATAATTAGATAAGTTCCGGTGATTGGGGGGGTTTCTACTTGAATTTTTTCTCTTCTAAAATTCACTACTATGTATTGTTATTATAATATGATTTCTGTCTTGCTTTTCAGGTAGTCTGCCATCATACTTTGGTTGGTTTAGCCCACCTGCCCACCCCATACCATTCATTCATACGGGCCGACTTCAAGAGTTGAACCCAGTCTGGAGGCCTTTTGTATTTTAAACCGGGTATCTCTCTCCTCCAAACCCTAAAACTCCGAACCCGCCGCCCCGCCTCTCTACATCTCTCTCCGTCTCTCCAAACCCTAGTAGTAGAAGATAGTGAAGATGAATAATCCATCAGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAGAGAGGGGTTTGTCAGAAACAATGTAACTGGTTTTCCTTTTCTTCCTCTTTGATTTTTGGGCGCAAGTTTGTATGTGAAAATGTAATTATATGATCTCCTCTTCTTTCAGTGCAGCACATGATGTATGGTTTTGGAGATGACGCCGGGAAATCCGCTTGGAACTCCGCCGGCAATATCCGCTCGGAACTCCGCCGGCAATATCCTACAAGAACGAGAACAGAGAGAAGGGATCCAGATCCAGACCCGACCGGCTCAAATCTGACCCAGCGGATAGCCCAGATCTTTGGGCTGCCCGGCCCAGCGGATAGCCCAGATCCGTGGGCTGCCCGGCCCACTACGACAAGGCTAGGTCCGTGGGCTGCCCGGCCCACTACGACAAGCCCAGGTCCGTGAGGTGACCCGGCCCACTACGACAAGGCTAGGTCCGTGGGCTGACCCGGCCCACTACGACAATCCCAGGTCCGTGAGGTGACCCGACCCACTACGACTGCCCCGATCCGACCCGCTTAACACTGCTCAATACAGGTCAGTTTGTTTATTGTGGGAGATGGTTCGATCTTCTGTAACTCGTCTGTCTATCTGTAGGCAAAAATTACGGGGACGGTTTGGACTCGTGGCGCTACCAATTCTCAAGCTTGGAAGCGTAGTCGGAGTGCCAGCCGACCCCGGATCCGACCCGCTAACATTAGTTTGTCTGTGGAGTGTCTAACTCTCTCCCTCGCCCAATATCATGGGTGAAAGTGAGAGGGAATAAAAGAAAAGAAAAGTCTATTTCATTTACTAATTTTTGTGAGAGGGCTGTTTGCGTGTTTTGTATGGAAAAGGAGTGGAATCAGGGGCAATCATATTATTAAGTCAGAGAGGGGCAGGCCATCATATTCTCAGCAAGCATTTCCCTGTATTGTATAAAAGAGGAGTGTGTTCTTCCTCACTCCCGCATTTCTCTTGTTTTCTTATTCAGCTTCTTGGTGGTATGTCTCTCAGTCTCAACTTCTACTTTGATTAATTTTGTATATTCCTCTACTAATGTAGTAATGTTTTTTTATTTCCTCTAGTCATGGCATCCAGCGGCACCAACATGAACGCCGGAAAACAACAGAACAAAAGCGTGTGGAAGGATGAGATAGAATGTCTAATGTGTACGTGGAGTGGGACGGTGAAGGACGCAGTTTATCACCAACGAGTCCACAATGGAAAGTATCATACCTGCCCAACTTGCAAGGTGAAGTTCCCTTCAAAGAGGGACTTGTGGATTCACCAAGATGAGAGACATGATGATGGTAGATAGCTCACACCACACCAAGAGGAGAGACTAGCTCCATCTGGGTGAGCCATTTATGTTTTTATCAAATAGTAAATTATGAACTTGTGTTATGTTTGCTGGTTTGTGTTATGTTTGCTGGTTTGTGTTATGTTTGTTGGTTGGTTGGTTTGGTGAATATTACTTATATTTGAAAATATTGTGTTGTGTTGTTTGTTTTGTAGATATTATTGTTATTATTATGTAATTTGGTTAATTACGCGGTGGATGTAGAATTATCAACCTCTCTCTCTCTATGTTATCGTGTTCTCGTCTCTCCACTTTTATCTATGTTCTTTCTCCTTAAACTGTAACATTTTTTTTTTCTTTTTTTCTTTTTTTAAAATGATTTGTGTATATTTTTTAAAATTCTAACTGTAACATTTTTTTTTTCTTTTTTTCTTTTTTTAAAATGATTTGTGTATATTTTTTAAAATTCTAAGATGTACATAATAAATTTTAAATTTTAAAA

mRNA sequence

GTTATACAGAAGATTTGATTTTACGCTAGGGCTTACTCTTTCCAACACTGAATCTGCTGCAGACGGAGCGGCGATCGTCTCCGGTAGTCTGCCATCATACTTTGGTTGGTTTAGCCCACCTGCCCACCCCATACCATTCATTCATACGGGCCGACTTCAAGAGTTGAACCCAGTCTGGAGGCCTTTTGTATTTTAAACCGGGTATCTCTCTCCTCCAAACCCTAAAACTCCGAACCCGCCGCCCCGCCTCTCTACATCTCTCTCCGTCTCTCCAAACCCTAGTAGTAGAAGATAGTGAAGATGAATAATCCATCAGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAGAGAGGGGTTTGTCAGAAACAATTGCAGCACATGATGTATGGTTTTGGAGATGACGCCGGGAAATCCGCTTGGAACTCCGCCGGCAATATCCGCTCGGAACTCCGCCGGCAATATCCTACAAGAACGAGAACAGAGAGAAGGGATCCAGATCCAGACCCGACCGGCTCAAATCTGACCCAGCGGATAGCCCAGATCTTTGGGCTGCCCGGCCCAGCGGATAGCCCAGATCCGTGGGCTGCCCGGCCCACTACGACAAGGCTAGTCATGGCATCCAGCGGCACCAACATGAACGCCGGAAAACAACAGAACAAAAGCGTGTGGAAGGATGAGATAGAATGTCTAATGTGTACGTGGAGTGGGACGGTGAAGGACGCAGTTTATCACCAACGAGTCCACAATGGAAAGTATCATACCTGCCCAACTTGCAAGGTGAAGTTCCCTTCAAAGAGGGACTTGTGGATTCACCAAGATGAGAGACATGATGATGGTAGATAGCTCACACCACACCAAGAGGAGAGACTAGCTCCATCTGGGTGAGCCATTTATGTTTTTATCAAATAGTAAATTATGAACTTGTGTTATGTTTGCTGGTTTGTGTTATGTTTGCTGGTTTGTGTTATGTTTGTTGGTTGGTTGGTTTGGTGAATATTACTTATATTTGAAAATATTGTGTTGTGTTGTTTGTTTTGTAGATATTATTGTTATTATTATGTAATTTGGTTAATTACGCGGTGGATGTAGAATTATCAACCTCTCTCTCTCTATGTTATCGTGTTCTCGTCTCTCCACTTTTATCTATGTTCTTTCTCCTTAAACTGTAACATTTTTTTTTTCTTTTTTTCTTTTTTTAAAATGATTTGTGTATATTTTTTAAAATTCTAACTGTAACATTTTTTTTTTCTTTTTTTCTTTTTTTAAAATGATTTGTGTATATTTTTTAAAATTCTAAGATGTACATAATAAATTTTAAATTTTAAAA

Coding sequence (CDS)

ATGAATAATCCATCAGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAGAGAGGGGTTTGTCAGAAACAATTGCAGCACATGATGTATGGTTTTGGAGATGACGCCGGGAAATCCGCTTGGAACTCCGCCGGCAATATCCGCTCGGAACTCCGCCGGCAATATCCTACAAGAACGAGAACAGAGAGAAGGGATCCAGATCCAGACCCGACCGGCTCAAATCTGACCCAGCGGATAGCCCAGATCTTTGGGCTGCCCGGCCCAGCGGATAGCCCAGATCCGTGGGCTGCCCGGCCCACTACGACAAGGCTAGTCATGGCATCCAGCGGCACCAACATGAACGCCGGAAAACAACAGAACAAAAGCGTGTGGAAGGATGAGATAGAATGTCTAATGTGTACGTGGAGTGGGACGGTGAAGGACGCAGTTTATCACCAACGAGTCCACAATGGAAAGTATCATACCTGCCCAACTTGCAAGGTGAAGTTCCCTTCAAAGAGGGACTTGTGGATTCACCAAGATGAGAGACATGATGATGGTAGATAG

Protein sequence

MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDAGKSAWNSAGNIRSELRRQYPTRTRTERRDPDPDPTGSNLTQRIAQIFGLPGPADSPDPWAARPTTTRLVMASSGTNMNAGKQQNKSVWKDEIECLMCTWSGTVKDAVYHQRVHNGKYHTCPTCKVKFPSKRDLWIHQDERHDDGR
Homology
[Close]
BLAST of Cp4.1LG14g08490 vs. NCBI nr
Match: XP_022991537.1 (transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >XP_022991538.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >KAG6575785.1 Transcription initiation factor TFIID subunit 13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014326.1 Transcription initiation factor TFIID subunit 13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.4 bits (215), Expect = 3.12e-18
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA 46
          MNNPSAGSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDDA
Sbjct: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDA 46

[Close]
BLAST of Cp4.1LG14g08490 vs. NCBI nr
Match: XP_023547584.1 (transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo] >XP_023547585.1 transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 8.73e-18
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA 46
          MNNPSAGSSSKQRTG+SQPSETSFKRKRGV QK+LQHMMYGFGDDA
Sbjct: 1  MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDA 46

[Close]
BLAST of Cp4.1LG14g08490 vs. NCBI nr
Match: XP_038899215.1 (transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899216.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899217.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 1.23e-17
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD 45
          MNNPSAGSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDD
Sbjct: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD 45

[Close]
BLAST of Cp4.1LG14g08490 vs. NCBI nr
Match: XP_022953440.1 (transcription initiation factor TFIID subunit 13 [Cucurbita moschata] >XP_022953441.1 transcription initiation factor TFIID subunit 13 [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 1.23e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA 46
          MNNPS GSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDDA
Sbjct: 1  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDA 46

[Close]
BLAST of Cp4.1LG14g08490 vs. NCBI nr
Match: XP_022144527.1 (transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_022144536.1 transcription initiation factor TFIID subunit 13 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 6.80e-17
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD 45
          MNNPSAG SSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDD
Sbjct: 1  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD 45

[Close]
BLAST of Cp4.1LG14g08490 vs. ExPASy TrEMBL
Match: A0A6J1JWI2 (transcription initiation factor TFIID subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC111488122 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.51e-18
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA 46
          MNNPSAGSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDDA
Sbjct: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDA 46

[Close]
BLAST of Cp4.1LG14g08490 vs. ExPASy TrEMBL
Match: A0A6J1GN10 (transcription initiation factor TFIID subunit 13 OS=Cucurbita moschata OX=3662 GN=LOC111455994 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.95e-18
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA 46
          MNNPS GSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDDA
Sbjct: 1  MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDA 46

[Close]
BLAST of Cp4.1LG14g08490 vs. ExPASy TrEMBL
Match: A0A6J1CTQ0 (transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 GN=LOC111014188 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.29e-17
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD 45
          MNNPSAG SSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDD
Sbjct: 1  MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD 45

[Close]
BLAST of Cp4.1LG14g08490 vs. ExPASy TrEMBL
Match: A0A1S3BRL0 (transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492769 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.95e-17
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD 45
          MNN SAGSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDD
Sbjct: 1  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD 45

[Close]
BLAST of Cp4.1LG14g08490 vs. ExPASy TrEMBL
Match: A0A5A7TZC2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00490 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.95e-17
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD 45
          MNN SAGSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDD
Sbjct: 1  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD 45

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g08490 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g08490 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022991537.13.12e-1895.65transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >XP_02299153... [more]
XP_023547584.18.73e-1893.48transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo] >X... [more]
XP_038899215.11.23e-1795.56transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_03... [more]
XP_022953440.11.23e-1793.48transcription initiation factor TFIID subunit 13 [Cucurbita moschata] >XP_022953... [more]
XP_022144527.16.80e-1793.33transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_02214... [more]
BLAST of Cp4.1LG14g08490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JWI21.51e-1895.65transcription initiation factor TFIID subunit 13 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1GN105.95e-1893.48transcription initiation factor TFIID subunit 13 OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1CTQ03.29e-1793.33transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 ... [more]
A0A1S3BRL08.95e-1793.33transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A5A7TZC28.95e-1793.33Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=... [more]
BLAST of Cp4.1LG14g08490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 164..187
e-value: 0.025
score: 23.8
coord: 138..159
e-value: 80.0
score: 5.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 166..187
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 110..190
e-value: 8.7E-7
score: 30.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g08490.1Cp4.1LG14g08490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009960 endosperm development
biological_process GO:0006366 transcription by RNA polymerase II
biological_process GO:0006413 translational initiation
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003743 translation initiation factor activity