Cp4.1LG14g08050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g08050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Gamma-tubulin complex component
Location	Cp4.1LG14: 6360104 .. 6364205 (-)
RNA-Seq Expression	Cp4.1LG14g08050
Synteny	Cp4.1LG14g08050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGGTTATATGGAATCTGCTTAATCTTTAAACCTTCTTTCCGTTAATTAATTAGGTGCTCGGAACCAAAAAAAATGTAATTTTGTTAAGTTAATTTTTAATATGAGTACACAATTAAAAAGGAAAAAGTGCTGGAGATCAGACCGTTCCGATTCATATTGGGAGGTGGAAACTTGGCTCAACCTTCACAGTCTGTGCCACCACCACAAGCTGCACCACCTCCAAGGGCACTAGCGGATGGTTACCCAACAAGCTAACATTTGGCAACTTGTTAAATAAGCGATTTGGCTATGGGATTTCAAGGGGTTCGATCTGCGTCTATTCACCCGTTCTAAAAGAAATCCAACAGAAGCCCAAATGGATCTTGTCTATGGAGACCATCTTCCTGTTCATAGAAAGTACCCTGCCCGTCATATATGCTGCAAAAAGAAGCGCTTTAAAAACGTTGAGAGAAAATCGGAAAAGAAGAGCTCATTCCTTCTTTCTCTCTTTGTTTCACTCTGATCATCTGATGTTGGAGCTGCACCATTGAGAATTTGAAACTTGCGTCTTTCGGGTGAAGGGAGGGCCTTCGTTGCTAACTTTTTTGAAATGGGTTCTTGGAATGTTCATTGGAAAACGCCATTTTAAGTCACTTCAGGACCCACCATCGCCCTGCATCCTTCTCAGAATTCACTGGATTGCAGTTGAGAAACTATGGAAAATCCAGCATCAACACCCCGTTGGAACCTCGAGAGGCCCTTTCTCACTGGGCGTTTCCACCAGGTTTCTATTTCTCCTCCCTTCTCTTTTATTCACGTTTATTATCTTCCGAATCGAACAGAAATGTATTTTTCTAAACATCAATAGCGTCTATGCTATACCATTACGTTATCTTCCGAGTTATAGAGGCTTAAATGGAGCTTCTGCAATCGAATTCTATCAATTACCAGTTCTGGCATCATTTTAATTGTTCCTGAATTCCCTGTTCTGTTATGAGTTATGATCATTATAGTTTTAATTCTTCGTTTGCTCTATTTTATACTTCAAATTTATACCCCAGGAAGCAAAAACTACTTCTCGTTTTTCTGAATTAAAGTTGGATTCCTTCAGGTAAGAACAATCTTAATAATTGCAGTATTAGGTTATCTAGTCACTCCTTGAGTCCGAGTATCATTCCTACATGAAACAATACTTATGGTACACTTTAAAAGTCGAATACCTCTGCAATAGGGGGGCTGGAAAAGGCCATAGGCTGTTATGATGCTGCAATTCAGGTATGATATAGTTCGTCAATTTGTTGTTCCTGAATTACTTGTTCTCTTACAAACCCTTTAGAGTACTACTCAACTGGCAGAGAAAAATGGAAAATTATAAGCCACTTCAATTTTCTTTGTAGCTTCAAATATATCTGTTCAAGAAGTTAAGTGCTTTCAAATATTATGATTAGGTTCTTACATTTTACTGAGGTCAGAGCTGCATGGTTGAATATTTTGAAAAAAAATTGGAGATGACACTGTAGGGACTCGTGAATAAATATATTTGATTTCCTTGTGCATTACTCCTAGTATGCTTCTATATCTACTGTGCATAATCTTGATTTGGAAGTCTTAATTTAGTAATAAGTTTATGCTGTGTTTATGATTAAATAAATGATAAATCATTAGTATGCATTTTGTATAGATTGAGAAAAAAGTTGGGATGTTTCATGAATTACTGCGTAGTATGTATCCAACAAGGCGCCAACCTATTAGCATCCAAAGTTGAAAGTTCTCCTGCTATTTTTATGACATTACTTTCTGAAGGGGTAGGGGGAAATATCAGTTGCTTTTTTATTAAGAACTTTTGCCCAAGGTCCTTGCTGAATCTCCTTAGATTTAGAAGCACGCCATTAATGAATAATGTTTGTGTATCAATATCAAATGAAATGCCTTCATGGGTATCTAGTCTCTGCTGGATGTTGCCTTACGCTCCACACCAGCTGCAGCACATCCTTGTCATGAGGACTTAACGTGTTGTGTGGTAAGCTGATTGCAGTTTATTCTTTGTATGATGCAGAAAATACCAAAGAACTGCATGATTTCTTCATTTCTAAACACATTTTCAGGAAAGAATGTCGTTGCCTAAAAGCTTGCGTGCACTTAAGGATCTAGTTGATAGTAGGACTCTTCCAGGCATCAATGATGAGGAAGAACCCATGGGGATTACTGGCCTTAAAGTGATACAGTTTATCTCAAAAAAGTTGAAACAATTTAAAGAAAGCAATGTTATAAAATAAAAGCGAGTAGGGTGTTCGTTCCCTTAATATCAGTGGTACATCCATCTCAACATCATCGTTACTCTGTCGTTCAATGCTTAAATTTATTAATACCCTTCTACACTACTTGACATTTGAGGTAAGTTTTATCCATCCTACTTAAGCATGCTGCTGAGATAAAATCCTACTCTATATGTTTGTAGCCATTATGTTTTTCCCTGACCGTAACCTTAGTTCCCATAACCTATCATCAAGAGTTTTTTGGTTTTAGGTTCTTGAACCCAATTGGCATGTAATGCACAACCGGATTCAGACTGCAAAGAGCATTGATGAGAGGCTATACATTGGCTCCCATAGAGCGAAAAAACTCCCTCCTATAATGGTTGTTGAGGTTGTTTCTATTCGAAACCACGATCCTCTGCAACGGTATATGATATTGTCCACTTTGAGCATAAGCTCTCGTAGCTTTGTTTTTGGTTTCCCCAAAAGGCTTCGTACCAATGGAGATTCTATTCCTTACTTATAAACTCATGATCTTCCCCTTAATTAGTCAATGTGGGACTATGTGATGTCCCACATTGGTTGGGAAGGAGAATAAATCACCATTTATAAGGGTGTGGAAACCTTCCACTAGCAAACGTGTTTTAAAGTCTTGAGGGGAAGCCCGAAAGGAAAAACCCAAATAGGACAATATATGCTAACAATGGATCTGGGTCGTTACAAATGGTATCAGAGCCAGACATCGGACGATGTGCAACCCTTCTCGCTGTTCCCTGAAGGGGGTAGACACGAGGCAGTGTGGCAGTAAAGGATGCTGGGCCCTGAAGGGGGGTGGTTGGGGAGGAGAACAAATCACCATTTATAAGAGTGGTGGAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGAAAAACTCAAAGAGGACAATATCTGCTAGTGGTGAATCTGGGTCGTTACAGACTCCCTCCCAAGAATCCGAGCATGGCAGAAAGAGGTTATTAGCAGTAAATATGGGCGAGAGACTCCGGTTGTCTGTCTTTTTAAGTCCAAGAACAAATAGAGGCAATTGTCTTTGGTCTTAAATTATAAATCACAAATTGTTTATTCTGTTCATTTGTTGTTGGGATCTTCTTCTACTAATATTTTCTCTATGTGCAGAAAGTGGAGAGGTTGAAATTACTATGCCTGCAGTATGCAGCAGCTACACAGTGCTTGATTTCATCCTCCATTGATGGCTGCAAGTCAGCGGAATCGTCGAATAGCTTGACCCGTTCCGAAACATCCAAGCAACGGAATGGAAGAACTCCCAAGGGAGCGATACTAAGCGCCTCCAACTCGACACTCACCGAGTCTATCCTGTAAGTTTGTAAGTTCGTAACGAGCAGCTATTTACATTCATAACTCAACTCAAAATTTCTTGTACTCACGTTCGTGTTGCACATGTTGAGCTTCAGAGTTTGGGACCCCTTCTGAGTAAAAGCTCCCAGGCTGAGCCATATTTAACTCACCTTGCTCAGTGGATTCTTGGCATGGAAATAACAAATAGGTTCTAAATTTCTTCCCTAACTGCTGCAACTTTACAGAATTGATTTCATAGAGGTCTAGAAAGCATAATGGCTCAGTATGTCTGTCTGTATCGTCTTACGCTTTTTAGGAGTCGGGTTTTTTACGTGCTTTATTTTTACTTGTGAGTTGTTAGAAAGTTAACAAAATTCTCCCCTACTCACGTAATCTTCCCTCTAGAATGGTACTCTCGTGTCTCTCCCTTGAATAATTTTCTTCTGATGTTCACAAATTCTTCTTAGATGACTCTTCGACCCAACATACAATGTAGTCAAACCTTGA

mRNA sequence

ATGATGAGGACCCACCATCGCCCTGCATCCTTCTCAGAATTCACTGGATTGCAGTTGAGAAACTATGGAAAATCCAGCATCAACACCCCGTTGGAACCTCGAGAGGCCCTTTCTCACTGGGCGTTTCCACCAGGGGGGCTGGAAAAGGCCATAGGCTGTTATGATGCTGCAATTCAGTCTCTGCTGGATGTTGCCTTACGCTCCACACCAGCTGCAGCACATCCTTGTCATGAGGACTTAACGTGTTGTGTGGAAAGAATGTCGTTGCCTAAAAGCTTGCGTGCACTTAAGGATCTAGTTGATAGTAGGACTCTTCCAGGCATCAATGATGAGGAAGAACCCATGGGGATTACTGGCCTTAAAAAAGTGGAGAGGTTGAAATTACTATGCCTGCAGTATGCAGCAGCTACACAGTGCTTGATTTCATCCTCCATTGATGGCTGCAAGTCAGCGGAATCGTCGAATAGCTTGACCCGTTCCGAAACATCCAAGCAACGGAATGGAAGAACTCCCAAGGGAGCGATACTAAGCGCCTCCAACTCGACACTCACCGAGTCTATCCTAGTTTGGGACCCCTTCTGAGTAAAAGCTCCCAGGCTGAGCCATATTTAACTCACCTTGCTCAGTGGATTCTTGGCATGGAAATAACAAATAGGTTCTAAATTTCTTCCCTAACTGCTGCAACTTTACAGAATTGATTTCATAGAGGTCTAGAAAGCATAATGGCTCAGTATGTCTGTCTGTATCGTCTTACGCTTTTTAGGAGTCGGGTTTTTTACGTGCTTTATTTTTACTTGTGAGTTGTTAGAAAGTTAACAAAATTCTCCCCTACTCACGTAATCTTCCCTCTAGAATGGTACTCTCGTGTCTCTCCCTTGAATAATTTTCTTCTGATGTTCACAAATTCTTCTTAGATGACTCTTCGACCCAACATACAATGTAGTCAAACCTTGA

Coding sequence (CDS)

ATGATGAGGACCCACCATCGCCCTGCATCCTTCTCAGAATTCACTGGATTGCAGTTGAGAAACTATGGAAAATCCAGCATCAACACCCCGTTGGAACCTCGAGAGGCCCTTTCTCACTGGGCGTTTCCACCAGGGGGGCTGGAAAAGGCCATAGGCTGTTATGATGCTGCAATTCAGTCTCTGCTGGATGTTGCCTTACGCTCCACACCAGCTGCAGCACATCCTTGTCATGAGGACTTAACGTGTTGTGTGGAAAGAATGTCGTTGCCTAAAAGCTTGCGTGCACTTAAGGATCTAGTTGATAGTAGGACTCTTCCAGGCATCAATGATGAGGAAGAACCCATGGGGATTACTGGCCTTAAAAAAGTGGAGAGGTTGAAATTACTATGCCTGCAGTATGCAGCAGCTACACAGTGCTTGATTTCATCCTCCATTGATGGCTGCAAGTCAGCGGAATCGTCGAATAGCTTGACCCGTTCCGAAACATCCAAGCAACGGAATGGAAGAACTCCCAAGGGAGCGATACTAAGCGCCTCCAACTCGACACTCACCGAGTCTATCCTAGTTTGGGACCCCTTCTGA

Protein sequence

MMRTHHRPASFSEFTGLQLRNYGKSSINTPLEPREALSHWAFPPGGLEKAIGCYDAAIQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGITGLKKVERLKLLCLQYAAATQCLISSSIDGCKSAESSNSLTRSETSKQRNGRTPKGAILSASNSTLTESILVWDPF

Homology

[Close]

BLAST of Cp4.1LG14g08050 vs. ExPASy Swiss-Prot
Match: Q9C5H9 (Gamma-tubulin complex component 2 OS=Arabidopsis thaliana OX=3702 GN=GCP2 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-09
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLD+ALR+T AAA P HEDLTCCV+R SL  +L   KD  DS      N  E+PM I
Sbjct: 404 LQSLLDLALRTTAAAADPRHEDLTCCVDRASLLTTLGMHKD-TDS------NSIEDPMSI 460

Query: 118 TGLK 122
           TGL+
Sbjct: 464 TGLE 460

[Close]

BLAST of Cp4.1LG14g08050 vs. NCBI nr
Match: XP_023007759.1 (gamma-tubulin complex component 2-like [Cucurbita maxima])

HSP 1 Score: 177 bits (450), Expect = 2.91e-48
Identity = 124/270 (45.93%), Postives = 128/270 (47.41%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLDVALRST AAA PCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI
Sbjct: 397 LQSLLDVALRSTAAAADPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 456

Query: 118 TGL--------------------------------------------------------- 177
           TGL                                                         
Sbjct: 457 TGLETFSLSYKVRWPLSIVISWKSLSKYQLIFRFLFHCKHVERQLCWAWQVHQVGLGCSV 516

Query: 178 ------------------------------------------------------------ 191
                                                                       
Sbjct: 517 RSLNISGTSISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRIQTAKSIDEVIRHH 576

[Close]

BLAST of Cp4.1LG14g08050 vs. NCBI nr
Match: KAG6577533.1 (Gamma-tubulin complex component 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179 bits (454), Expect = 2.96e-48
Identity = 123/265 (46.42%), Postives = 127/265 (47.92%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLDVALRST AAA PCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI
Sbjct: 397 LQSLLDVALRSTAAAADPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 456

Query: 118 TGL--------------------------------------------------------- 177
           TGL                                                         
Sbjct: 457 TGLETFSLSFKVRWPLCIVISWKSVSKYQLIFRFLFHCKHVERQLCWAWQVHQGVSSLNI 516

Query: 178 ------------------------------------------------------------ 191
                                                                       
Sbjct: 517 SGTSISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRIQTAKSIDEVIQHHDFFLD 576

[Close]

BLAST of Cp4.1LG14g08050 vs. NCBI nr
Match: XP_038904155.1 (gamma-tubulin complex component 2 [Benincasa hispida] >XP_038904156.1 gamma-tubulin complex component 2 [Benincasa hispida])

HSP 1 Score: 141 bits (356), Expect = 3.81e-35
Identity = 107/265 (40.38%), Postives = 117/265 (44.15%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLDVALR+T AAA PC+EDLTCCVERMSLPKSLR LKDLVDS+TL  IND+EEPMGI
Sbjct: 404 LQSLLDVALRTTAAAADPCNEDLTCCVERMSLPKSLRTLKDLVDSKTLLDINDQEEPMGI 463

Query: 118 TGL--------------------------------------------------------- 177
           TGL                                                         
Sbjct: 464 TGLEAFSLSYKVRWPLSIVISWKSLSKYQLIFRFLFHCKHVERQLCWAWQVHQGVRSLNI 523

Query: 178 ------------------------------------------------------------ 191
                                                                       
Sbjct: 524 RGTSISRSSLLCRAMLKFINSLLHYLTFEVLEPNWHVMHNRIQTAKSIDEVIQHHDFFLD 583

[Close]

BLAST of Cp4.1LG14g08050 vs. NCBI nr
Match: XP_023005320.1 (gamma-tubulin complex component 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 139 bits (351), Expect = 1.84e-34
Identity = 105/265 (39.62%), Postives = 116/265 (43.77%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLDVALR+T AAA PCHEDLTCCVERMSLPKSLRALKDLVDSRTL  IND+EEPMGI
Sbjct: 403 LQSLLDVALRTTAAAADPCHEDLTCCVERMSLPKSLRALKDLVDSRTLTDINDQEEPMGI 462

Query: 118 TGL--------------------------------------------------------- 177
           TGL                                                         
Sbjct: 463 TGLEAFSLSYKVRWPLSIVISWKSLSKYQLIFRFLFHCKHVERQLCGAWQVHQGVRSLNI 522

Query: 178 ------------------------------------------------------------ 191
                                                                       
Sbjct: 523 HGTSISRSSLLCRAMLKFINSLLHYLTFEVLEPNWHVMHNRIQTAKSIDEVIQHHDFFLD 582

[Close]

BLAST of Cp4.1LG14g08050 vs. NCBI nr
Match: XP_023005318.1 (gamma-tubulin complex component 2-like isoform X1 [Cucurbita maxima] >XP_023005319.1 gamma-tubulin complex component 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 139 bits (351), Expect = 1.85e-34
Identity = 105/265 (39.62%), Postives = 116/265 (43.77%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLDVALR+T AAA PCHEDLTCCVERMSLPKSLRALKDLVDSRTL  IND+EEPMGI
Sbjct: 404 LQSLLDVALRTTAAAADPCHEDLTCCVERMSLPKSLRALKDLVDSRTLTDINDQEEPMGI 463

Query: 118 TGL--------------------------------------------------------- 177
           TGL                                                         
Sbjct: 464 TGLEAFSLSYKVRWPLSIVISWKSLSKYQLIFRFLFHCKHVERQLCGAWQVHQGVRSLNI 523

Query: 178 ------------------------------------------------------------ 191
                                                                       
Sbjct: 524 HGTSISRSSLLCRAMLKFINSLLHYLTFEVLEPNWHVMHNRIQTAKSIDEVIQHHDFFLD 583

[Close]

BLAST of Cp4.1LG14g08050 vs. ExPASy TrEMBL
Match: A0A6J1L5W1 (Gamma-tubulin complex component OS=Cucurbita maxima OX=3661 GN=LOC111500276 PE=3 SV=1)

HSP 1 Score: 177 bits (450), Expect = 1.41e-48
Identity = 124/270 (45.93%), Postives = 128/270 (47.41%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLDVALRST AAA PCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI
Sbjct: 397 LQSLLDVALRSTAAAADPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 456

Query: 118 TGL--------------------------------------------------------- 177
           TGL                                                         
Sbjct: 457 TGLETFSLSYKVRWPLSIVISWKSLSKYQLIFRFLFHCKHVERQLCWAWQVHQVGLGCSV 516

Query: 178 ------------------------------------------------------------ 191
                                                                       
Sbjct: 517 RSLNISGTSISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRIQTAKSIDEVIRHH 576

[Close]

BLAST of Cp4.1LG14g08050 vs. ExPASy TrEMBL
Match: A0A6J1KX38 (Gamma-tubulin complex component OS=Cucurbita maxima OX=3661 GN=LOC111498352 PE=3 SV=1)

HSP 1 Score: 139 bits (351), Expect = 8.90e-35
Identity = 105/265 (39.62%), Postives = 116/265 (43.77%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLDVALR+T AAA PCHEDLTCCVERMSLPKSLRALKDLVDSRTL  IND+EEPMGI
Sbjct: 403 LQSLLDVALRTTAAAADPCHEDLTCCVERMSLPKSLRALKDLVDSRTLTDINDQEEPMGI 462

Query: 118 TGL--------------------------------------------------------- 177
           TGL                                                         
Sbjct: 463 TGLEAFSLSYKVRWPLSIVISWKSLSKYQLIFRFLFHCKHVERQLCGAWQVHQGVRSLNI 522

Query: 178 ------------------------------------------------------------ 191
                                                                       
Sbjct: 523 HGTSISRSSLLCRAMLKFINSLLHYLTFEVLEPNWHVMHNRIQTAKSIDEVIQHHDFFLD 582

[Close]

BLAST of Cp4.1LG14g08050 vs. ExPASy TrEMBL
Match: A0A6J1L1U6 (Gamma-tubulin complex component OS=Cucurbita maxima OX=3661 GN=LOC111498352 PE=3 SV=1)

HSP 1 Score: 139 bits (351), Expect = 8.93e-35
Identity = 105/265 (39.62%), Postives = 116/265 (43.77%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLDVALR+T AAA PCHEDLTCCVERMSLPKSLRALKDLVDSRTL  IND+EEPMGI
Sbjct: 404 LQSLLDVALRTTAAAADPCHEDLTCCVERMSLPKSLRALKDLVDSRTLTDINDQEEPMGI 463

Query: 118 TGL--------------------------------------------------------- 177
           TGL                                                         
Sbjct: 464 TGLEAFSLSYKVRWPLSIVISWKSLSKYQLIFRFLFHCKHVERQLCGAWQVHQGVRSLNI 523

Query: 178 ------------------------------------------------------------ 191
                                                                       
Sbjct: 524 HGTSISRSSLLCRAMLKFINSLLHYLTFEVLEPNWHVMHNRIQTAKSIDEVIQHHDFFLD 583

[Close]

BLAST of Cp4.1LG14g08050 vs. ExPASy TrEMBL
Match: A0A0A0L4S8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045130 PE=3 SV=1)

HSP 1 Score: 139 bits (350), Expect = 1.68e-34
Identity = 106/265 (40.00%), Postives = 117/265 (44.15%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLDVALR+T AAA PCHEDLTCCVERMSLPKSLRALKDLVDS+TL  IND+EEPMGI
Sbjct: 404 LQSLLDVALRTTAAAADPCHEDLTCCVERMSLPKSLRALKDLVDSKTLD-INDQEEPMGI 463

Query: 118 TGL--------------------------------------------------------- 177
           TGL                                                         
Sbjct: 464 TGLEAFSLSYKVRWPLSIVISWKSLSKYQLIFRFLFHCKHVERQLCWAWQVHQGVRSLNI 523

Query: 178 ------------------------------------------------------------ 191
                                                                       
Sbjct: 524 RGTSISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRIQTAKSIDEVIQHHDFFLD 583

[Close]

BLAST of Cp4.1LG14g08050 vs. ExPASy TrEMBL
Match: A0A6J1FKE7 (Gamma-tubulin complex component OS=Cucurbita moschata OX=3662 GN=LOC111445008 PE=3 SV=1)

HSP 1 Score: 137 bits (345), Expect = 5.90e-34
Identity = 104/265 (39.25%), Postives = 115/265 (43.40%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLDVALR+T AAA PCHEDLTCCVERMSLPKSLRALKDLVDSRTL  IND+EEPMGI
Sbjct: 403 LQSLLDVALRTTAAAADPCHEDLTCCVERMSLPKSLRALKDLVDSRTLTDINDQEEPMGI 462

Query: 118 TGL--------------------------------------------------------- 177
           TGL                                                         
Sbjct: 463 TGLEAFSLSYKVRWPLSIVISWKSLSKYQLIFRFLFHCKHVERQLCGAWQVHQGVRSLNI 522

Query: 178 ------------------------------------------------------------ 191
                                                                       
Sbjct: 523 RGTSISRSSLLCRAMLKFINSLLHYLTFEVLEPNWHVMHNRIQTAKSIDEVIQHHDFFLD 582

[Close]

BLAST of Cp4.1LG14g08050 vs. TAIR 10
Match: AT5G17410.2 (Spc97 / Spc98 family of spindle pole body (SBP) component )

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLD+ALR+T AAA P HEDLTCCV+R SL  +L   KD  DS      N  E+PM I
Sbjct: 405 LQSLLDLALRTTAAAADPRHEDLTCCVDRASLLTTLGMHKD-TDS------NSIEDPMSI 461

Query: 118 TGLK 122
           TGL+
Sbjct: 465 TGLE 461

[Close]

BLAST of Cp4.1LG14g08050 vs. TAIR 10
Match: AT5G17410.1 (Spc97 / Spc98 family of spindle pole body (SBP) component )

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 58  IQSLLDVALRSTPAAAHPCHEDLTCCVERMSLPKSLRALKDLVDSRTLPGINDEEEPMGI 117
           +QSLLD+ALR+T AAA P HEDLTCCV+R SL  +L   KD  DS      N  E+PM I
Sbjct: 404 LQSLLDLALRTTAAAADPRHEDLTCCVDRASLLTTLGMHKD-TDS------NSIEDPMSI 460

Query: 118 TGLK 122
           TGL+
Sbjct: 464 TGLE 460

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g08050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5H9	2.2e-09	57.81	Gamma-tubulin complex component 2 OS=Arabidopsis thaliana OX=3702 GN=GCP2 PE=1 S...	[more]

BLAST of Cp4.1LG14g08050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023007759.1	2.91e-48	45.93	gamma-tubulin complex component 2-like [Cucurbita maxima]	[more]
KAG6577533.1	2.96e-48	46.42	Gamma-tubulin complex component 2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038904155.1	3.81e-35	40.38	gamma-tubulin complex component 2 [Benincasa hispida] >XP_038904156.1 gamma-tubu...	[more]
XP_023005320.1	1.84e-34	39.62	gamma-tubulin complex component 2-like isoform X2 [Cucurbita maxima]	[more]
XP_023005318.1	1.85e-34	39.62	gamma-tubulin complex component 2-like isoform X1 [Cucurbita maxima] >XP_0230053...	[more]

BLAST of Cp4.1LG14g08050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L5W1	1.41e-48	45.93	Gamma-tubulin complex component OS=Cucurbita maxima OX=3661 GN=LOC111500276 PE=3...	[more]
A0A6J1KX38	8.90e-35	39.62	Gamma-tubulin complex component OS=Cucurbita maxima OX=3661 GN=LOC111498352 PE=3...	[more]
A0A6J1L1U6	8.93e-35	39.62	Gamma-tubulin complex component OS=Cucurbita maxima OX=3661 GN=LOC111498352 PE=3...	[more]
A0A0A0L4S8	1.68e-34	40.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045130 PE=3 SV=1	[more]
A0A6J1FKE7	5.90e-34	39.25	Gamma-tubulin complex component OS=Cucurbita moschata OX=3662 GN=LOC111445008 PE...	[more]

BLAST of Cp4.1LG14g08050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17410.2	1.6e-10	57.81	Spc97 / Spc98 family of spindle pole body (SBP) component	[more]
AT5G17410.1	1.6e-10	57.81	Spc97 / Spc98 family of spindle pole body (SBP) component	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g08050.1	Cp4.1LG14g08050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007020	microtubule nucleation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0000922	spindle pole
molecular_function	GO:0043015	gamma-tubulin binding