Cp4.1LG14g07650 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g07650
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA polymerase II elongation factor
Location	Cp4.1LG14: 6073093 .. 6073737 (+)
RNA-Seq Expression	Cp4.1LG14g07650
Synteny	Cp4.1LG14g07650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCGAAACGAGAGATTCCGGCGCCGCCCACGTAGTTGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCCGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTATTCGGCCTCCGAGTTGGGCGGCGAGAGACCAAAATGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCATGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCGGACCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTGGTTGTCTAGGAATTTCGTCACCATTGTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCTAAGTTCATACTCTGTGGCCTTTGA

mRNA sequence

ATGGCGACCGAAACGAGAGATTCCGGCGCCGCCCACGTAGTTGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCCGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTATTCGGCCTCCGAGTTGGGCGGCGAGAGACCAAAATGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCATGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCGGACCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTGGTTGTCTAGGAATTTCGTCACCATTGTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCTAAGTTCATACTCTGTGGCCTTTGA

Coding sequence (CDS)

ATGGCGACCGAAACGAGAGATTCCGGCGCCGCCCACGTAGTTGAAATCCCAGCAGAGAATCAGAACGTTATGATCTCTGTAATAGAACAACACCCATTGAGGCAAATCTCCGAAAGCTCCGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTATTCGGCCTCCGAGTTGGGCGGCGAGAGACCAAAATGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTGTTCCATGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCGGACCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTGGTTGTCTAGGAATTTCGTCACCATTGTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCTAAGTTCATACTCTGTGGCCTTTGA

Protein sequence

MATETRDSGAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRVGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL

Homology

[Close]

BLAST of Cp4.1LG14g07650 vs. NCBI nr
Match: XP_023553388.1 (uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 432 bits (1112), Expect = 5.88e-153
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MATETRDSGAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRV 60
           MATETRDSGAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRV
Sbjct: 1   MATETRDSGAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRV 60

Query: 61  GRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVI 120
           GRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVI
Sbjct: 61  GRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVI 120

Query: 121 VVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIK 180
           VVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIK
Sbjct: 121 VVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIK 180

Query: 181 WGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL 214
           WGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL
Sbjct: 181 WGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL 214

[Close]

BLAST of Cp4.1LG14g07650 vs. NCBI nr
Match: KAG7015562.1 (hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 423 bits (1088), Expect = 2.78e-149
Identity = 210/215 (97.67%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MATETRDSGAA-HVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATET+DSGAA HVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           +GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL 214
           KWGPLTWLSRNFVTI LLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 215

[Close]

BLAST of Cp4.1LG14g07650 vs. NCBI nr
Match: XP_022932317.1 (uncharacterized protein LOC111438709 [Cucurbita moschata])

HSP 1 Score: 420 bits (1080), Expect = 4.62e-148
Identity = 210/215 (97.67%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MATETRDSGAA-HVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATET+DSGAA HVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           +GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL 214
           KWGPLT LSRNFVTIVLLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCGL 215

[Close]

BLAST of Cp4.1LG14g07650 vs. NCBI nr
Match: XP_022965180.1 (uncharacterized protein LOC111465114 [Cucurbita maxima])

HSP 1 Score: 419 bits (1076), Expect = 1.88e-147
Identity = 207/215 (96.28%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MATETRDSGAA-HVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATET+DSGAA H+VEIPAENQN+MISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAATHIVEIPAENQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           +GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTR VQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL 214
           KWGPLTWLSRNFVTI LLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 215

[Close]

BLAST of Cp4.1LG14g07650 vs. NCBI nr
Match: XP_038905570.1 (uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 uncharacterized protein LOC120091553 [Benincasa hispida])

HSP 1 Score: 374 bits (960), Expect = 1.01e-129
Identity = 187/215 (86.98%), Postives = 197/215 (91.63%), Query Frame = 0


Query: 4   ETRDSGAAHVVEIPAE------NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFG 63
           ET+DSGA H+VEIP E      NQN MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFG
Sbjct: 3   ETKDSGA-HIVEIPVEQENHTQNQNPMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 62

Query: 64  LRVGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGV 123
           LR+GRRETKMESLKQQIFQLCC+FFLFHALSLTLL+TSSDPNVC KWWVP VAMGATSGV
Sbjct: 63  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPNVCKKWWVPAVAMGATSGV 122

Query: 124 FVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSV 183
           FVIVVQLKLWLYWKAS QLQREK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSV
Sbjct: 123 FVIVVQLKLWLYWKASGQLQREKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 182

Query: 184 EIKWGPLTWLSRNFVTIVLLCFSGIVFGASKFILC 212
           EIKWGPLTW SRNF+TI LL FS IVF ASKFILC
Sbjct: 183 EIKWGPLTWFSRNFITIFLLGFSAIVFAASKFILC 216

[Close]

BLAST of Cp4.1LG14g07650 vs. ExPASy TrEMBL
Match: A0A6J1EWB5 (uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC111438709 PE=4 SV=1)

HSP 1 Score: 420 bits (1080), Expect = 2.23e-148
Identity = 210/215 (97.67%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MATETRDSGAA-HVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATET+DSGAA HVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAAAHVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           +GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL 214
           KWGPLT LSRNFVTIVLLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCGL 215

[Close]

BLAST of Cp4.1LG14g07650 vs. ExPASy TrEMBL
Match: A0A6J1HN07 (uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114 PE=4 SV=1)

HSP 1 Score: 419 bits (1076), Expect = 9.10e-148
Identity = 207/215 (96.28%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MATETRDSGAA-HVVEIPAENQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60
           MATET+DSGAA H+VEIPAENQN+MISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR
Sbjct: 1   MATETKDSGAATHIVEIPAENQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 60

Query: 61  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120
           +GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV
Sbjct: 61  IGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 120

Query: 121 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180
           IVVQLKLWLYWKASAQLQREKSENRALTR VQELRMKGSCFNLSKEPQIGHRMKSSSVEI
Sbjct: 121 IVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 180

Query: 181 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCGL 214
           KWGPLTWLSRNFVTI LLCFSGIVFGASKFILCGL
Sbjct: 181 KWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL 215

[Close]

BLAST of Cp4.1LG14g07650 vs. ExPASy TrEMBL
Match: A0A1S3BL81 (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 366 bits (939), Expect = 7.46e-127
Identity = 180/214 (84.11%), Postives = 193/214 (90.19%), Query Frame = 0


Query: 4   ETRDSGAAHVVEIPAEN----QNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 63
           +T+DS AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR
Sbjct: 3   QTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLR 62

Query: 64  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 123
           +GRRETKMESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVFV
Sbjct: 63  IGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFV 122

Query: 124 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 183
           IVVQLKLW+YWKA  QLQREKSENRALTRC QELRMKGSCFNLSKEPQIG+RMKSSSVEI
Sbjct: 123 IVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSVEI 182

Query: 184 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCG 213
           KWGPLTW SRNF+ I LL FS IVF ASKFILCG
Sbjct: 183 KWGPLTWFSRNFIAISLLGFSAIVFAASKFILCG 216

[Close]

BLAST of Cp4.1LG14g07650 vs. ExPASy TrEMBL
Match: A0A0A0L2U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 365 bits (937), Expect = 1.51e-126
Identity = 179/214 (83.64%), Postives = 194/214 (90.65%), Query Frame = 0


Query: 4   ETRDSGAAHVVEIPAEN----QNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 63
           ET+DS AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR
Sbjct: 3   ETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLR 62

Query: 64  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 123
           +GRRETKMESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVFV
Sbjct: 63  IGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFV 122

Query: 124 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 183
           IVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEI
Sbjct: 123 IVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEI 182

Query: 184 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCG 213
           KWGPLTW SRNF+TI LL FS I+F  SKFILCG
Sbjct: 183 KWGPLTWFSRNFITISLLGFSAIIFVTSKFILCG 216

[Close]

BLAST of Cp4.1LG14g07650 vs. ExPASy TrEMBL
Match: A0A5A7VJ68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001520 PE=4 SV=1)

HSP 1 Score: 264 bits (675), Expect = 1.11e-87
Identity = 129/147 (87.76%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 67  MESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKL 126
           MESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVFVIVVQLKL
Sbjct: 1   MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKL 60

Query: 127 WLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTW 186
           W+YWKA  QLQREKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW
Sbjct: 61  WMYWKARGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTW 120

Query: 187 LSRNFVTIVLLCFSGIVFGASKFILCG 213
            SRNF+ I LL FS IVF ASKFILCG
Sbjct: 121 FSRNFIAISLLGFSAIVFAASKFILCG 147

[Close]

BLAST of Cp4.1LG14g07650 vs. TAIR 10
Match: AT5G56120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 233.4 bits (594), Expect = 1.7e-61
Identity = 123/235 (52.34%), Postives = 159/235 (67.66%), Query Frame = 0


Query: 5   TRDSGAAHVVEIPAENQNV-----------------MISVIEQHPLRQISESSGHLLLLK 64
           T+DS   HVVEIP + ++                  ++ VI+QHPL +ISES GHLLLLK
Sbjct: 4   TKDS---HVVEIPVDEEHKERQQQQQLVAVSNPGMGILKVIQQHPLSEISESPGHLLLLK 63

Query: 65  LWQREEHLFGLRVGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN-------- 124
           LWQREE LF  RV  +E+++ES+K++IFQLCC+F +FH    TL+++SS  +        
Sbjct: 64  LWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVVKSN 123

Query: 125 -VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGS 184
            VC KWW+P     ATS V V +VQ KL+++WK    + RE+++NR LTRCV ELRMKGS
Sbjct: 124 AVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRMKGS 183

Query: 185 CFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCG 214
            F+LSKEP  G RMKSSSVEIKW P+TW S+  +TIVLLC +G+ F  SKFILCG
Sbjct: 184 SFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCG 235

[Close]

BLAST of Cp4.1LG14g07650 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 70/191 (36.65%), Postives = 110/191 (57.59%), Query Frame = 0


Query: 30  QHPLRQISESSGHLLLLKLWQREEHLFGLRVGRRETKMESLKQQIFQLCCYFFLFHALSL 89
           +HPL QI+++  H LLLK W +EE L   RV  +E++++S++++I QL  +FFLFH++SL
Sbjct: 17  RHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIFFFLFHSISL 76

Query: 90  TLLF-------TSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSE 149
            LLF       +S+  + C + W+P +    +S   +  V+ K  +       L+REK +
Sbjct: 77  LLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKED 136

Query: 150 NRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPL-TWLSRNFVTIVLLCFSG 209
            + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+FVT+     S 
Sbjct: 137 AKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESK--PVKKWSARDFVTLFFFSVSC 196

Query: 210 IVFGASKFILC 213
           +V    + ILC
Sbjct: 197 LVLAMIRLILC 205

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g07650 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g07650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553388.1	5.88e-153	100.00	uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]	[more]
KAG7015562.1	2.78e-149	97.67	hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022932317.1	4.62e-148	97.67	uncharacterized protein LOC111438709 [Cucurbita moschata]	[more]
XP_022965180.1	1.88e-147	96.28	uncharacterized protein LOC111465114 [Cucurbita maxima]	[more]
XP_038905570.1	1.01e-129	86.98	uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 unchara...	[more]

BLAST of Cp4.1LG14g07650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWB5	2.23e-148	97.67	uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A6J1HN07	9.10e-148	96.28	uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114...	[more]
A0A1S3BL81	7.46e-127	84.11	uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=...	[more]
A0A0A0L2U7	1.51e-126	83.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1	[more]
A0A5A7VJ68	1.11e-87	87.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cp4.1LG14g07650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56120.1	1.7e-61	52.34	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G12870.1	1.1e-25	36.65	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..156
None	No IPR available	PANTHER	PTHR33287:SF3	OS03G0453550 PROTEIN	coord: 13..213
None	No IPR available	PANTHER	PTHR33287	OS03G0453550 PROTEIN	coord: 13..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g07650.1	Cp4.1LG14g07650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane