Cp4.1LG14g06860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g06860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	EKC/KEOPS complex, subunit Pcc1
Location	Cp4.1LG14: 181806 .. 183678 (+)
RNA-Seq Expression	Cp4.1LG14g06860
Synteny	Cp4.1LG14g06860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATTTGGGGGGAAAATCCGGCGGTTTTCAACCAGAATTGAAGCTATGCCTCCGACACCTTCCGTCGCTTCTGATGGAGAGCCCAATTGGGAATTCAGCTGGTTGTTCTCTCTTTCTCCAAGCCCATAAATGTATAATTACATGCTTTCCTTCGATTGTATGCCATATGCTTTTATATCAGTTTGTTCGTTGATGTTGCTGTGTTAGCTTTTGGGTGAGCTTCGCCTTTTTAGCTTTATCTTATTTCTCTTGTGATTGATCTGTTGTGTTCTTTCTCTGGTTCACTGGTTTTTCCACGGGGGAAAAACAAAAGACAATGATGATGATGATGTTCTTGCAACTGCCAAGCCATTCTTACCCGGAAAGCTCAATCTTTTATTGCTGAATCCGGAGTTTTTAACTACAGTAGTGCCTCGAACGTTCAGAAATGCCATTAATTCCCAATTGTTGGAATGATGGACCTTATTAACTAGCCAAAGCTCTGATCTTTCGCTGTGGTTCCTGGAAGCCAATGATGTTTTTTGGGTCTTGCCAGCGATCAACCATTGCTATTTTATCTTTCATCTTTTCTCGATTGCCTTCTAGAGACACAACAAGTAATTTGCTTCTTTTTCCAAGTATTCAATCTGGTTTGCTTTCTGCAGTGACTTTGAAGTCGATTATGAGTCGGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGGTGCTTCTCCATGATATCAATCTTCACATTGTGCCTCCGTATACTTAACTTGTTTCTGATTCCATTTCTGTGCTAAGTACAGTTGCAGCCAGACAAAGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATGTGAGCCTCTCTTTCTCTTCGAATTCCTGGTTCTTAATGTACGTCTAACAGTAGATAGATACCATAATAGCTTAATACAGGATTCTTTTGAGCATTAGTAAGGCTGCTGCGTTCATATTTCTCCGCAATCATATTTTGGCACTCCCATTAGCTGCTCATTTTTTTTCTCGTAGACACTTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGTGGATTTCTGATAGCCTTACATGCCCCTGGCCCTCTTATATCAAGTGTCACTTTATGCTTAAAGTAGCTATCATTTTAATTTACTACCTATCTGTAATTTTTTCACAATATGATTTGTAGTGGTTTGATCGAGTGTGAAGGTACTCATTCCAACATTGAGATCTAACGAGATGACATTTTCACCCACATGATGATATCATTCATGTTAATAACCATTAGAAAGGATGATCAATCCTACTTAATACATGGATAAACTTGGAAACGACAAAAATTATATCAATTTTATTAAACTAAATTATAAACAATAATTTGATGTGATTGTGGTTCATCATATCATTTGAAGTGGAAAAGAACAAAGAAATGACTTCATCGTGGGATGAAGGAAAACTGGTATATGGAATTCAATAACGTTCATGAAAGCACAAAGTGGCATCCCTAATGAATTGAATTTGAAGACCCCACTCACCAGCTGATTCCTCTTGTGCTAGTATTCATCCAAGTAAGTGTACAATGTATCGTCTTTCTTTGACTTGCGTCGGCTAAGCAAGGCCTTCAGGAGGCGTTTGCTTTTGCTGGGATATTGTTCAACATCTTTGCTGTTATCCCTCCTTTCTGCTGGCATCCGCATCGATGCTGATTTCCTAGGTGCCGAAGGGTACTGGTACCAAAGAAAAATTCATGTTGCAAAATCTCAGTTACTAGTAAAACACCATATACTTTTGCACAACATAAATGCAATT

mRNA sequence

GTTATTTGGGGGGAAAATCCGGCGGTTTTCAACCAGAATTGAAGCTATGCCTCCGACACCTTCCGTCGCTTCTGATGGAGAGCCCAATTGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCGGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAAGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACTTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGCCTTCAGGAGGCGTTTGCTTTTGCTGGGATATTGTTCAACATCTTTGCTGTTATCCCTCCTTTCTGCTGGCATCCGCATCGATGCTGATTTCCTAGGTGCCGAAGGGTACTGGTACCAAAGAAAAATTCATGTTGCAAAATCTCAGTTACTAGTAAAACACCATATACTTTTGCACAACATAAATGCAATT

Coding sequence (CDS)

ATGCCTCCGACACCTTCCGTCGCTTCTGATGGAGAGCCCAATTGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCGGAGAAGAAAGCTTCAATTGTGTACAAGGCTTTAGTAGTCGATAAAGAGTTGCAGCCAGACAAAGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCTATACACTTTGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATTCAGTGCTTTTGTAGACGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACAAGGAGCCTTCAGGAGGCGTTTGCTTTTGCTGGGATATTGTTCAACATCTTTGCTGTTATCCCTCCTTTCTGCTGGCATCCGCATCGATGCTGATTTCCTAGGTGCCGAAGGGTACTGGTACCAAAGAAAAATTCATGTTGCAAAATCTCAGTTACTAGTAAAACACCATATACTTTTGCACAACATAAATGCAATT

Protein sequence

MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKLSIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGAFRRRLLLLGYCSTSLLLSLLSAGIRIDADFLGAEGYWYQRKIHVAKSQLLVKHHILLHNINAI

Homology

[Close]

BLAST of Cp4.1LG14g06860 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191 bits (484), Expect = 7.03e-60
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 96
          SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG
Sbjct: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 96

[Close]

BLAST of Cp4.1LG14g06860 vs. NCBI nr
Match: KAG6576647.1 (hypothetical protein SDJN03_24221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181 bits (458), Expect = 6.41e-56
Identity = 92/96 (95.83%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PTPSVASDGEP WEFSCD EVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MAPTPSVASDGEPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 96
          SIH EAVEARFLRASFSAFVDVLTLATKTIEDFGQG
Sbjct: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 96

[Close]

BLAST of Cp4.1LG14g06860 vs. NCBI nr
Match: KAG7014698.1 (hypothetical protein SDJN02_22327 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176 bits (445), Expect = 6.11e-54
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PTPS+AS G+P WEFSCD EVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MAPTPSLASHGDPKWEFSCDLEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 96
          SIH EAVEARFLRASFSAFVDVLTLATKTIEDFGQG
Sbjct: 61 SIHLEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 96

[Close]

BLAST of Cp4.1LG14g06860 vs. NCBI nr
Match: XP_004146228.1 (uncharacterized protein LOC101217139 [Cucumis sativus] >KAE8650547.1 hypothetical protein Csa_010241 [Cucumis sativus])

HSP 1 Score: 171 bits (432), Expect = 5.82e-52
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PT SVAS GEP WEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKL
Sbjct: 1  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 95
          SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ
Sbjct: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 95

[Close]

BLAST of Cp4.1LG14g06860 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 171 bits (434), Expect = 5.95e-52
Identity = 87/96 (90.62%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PT SVASDGE  WEF CDFEVDYESEKKASIVY AL VDKELQPDKVKREM VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 96
           S+HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 119

[Close]

BLAST of Cp4.1LG14g06860 vs. ExPASy TrEMBL
Match: A0A6J1CHJ5 (uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011564 PE=3 SV=1)

HSP 1 Score: 171 bits (434), Expect = 2.88e-52
Identity = 87/96 (90.62%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PT SVASDGE  WEF CDFEVDYESEKKASIVY AL VDKELQPDKVKREM VSDGKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 96
           S+HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 119

[Close]

BLAST of Cp4.1LG14g06860 vs. ExPASy TrEMBL
Match: A0A0A0L7A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1)

HSP 1 Score: 171 bits (432), Expect = 1.76e-51
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
           M PT SVAS GEP WEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKR M+ SDGKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 95
           SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 153

[Close]

BLAST of Cp4.1LG14g06860 vs. ExPASy TrEMBL
Match: A0A6J1G2C3 (uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC111450028 PE=3 SV=1)

HSP 1 Score: 166 bits (420), Expect = 1.89e-50
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PT SV SDG+  WEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKREMTVSDGKL
Sbjct: 1  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQG 96
          S+HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQG
Sbjct: 61 SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQG 96

[Close]

BLAST of Cp4.1LG14g06860 vs. ExPASy TrEMBL
Match: A0A1S3CTG0 (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=3 SV=1)

HSP 1 Score: 165 bits (417), Expect = 5.41e-50
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PT SVASDGE  WEFSCDFEVDYESEKKASIVY AL+VDKELQPDKVKR M++S+GKL
Sbjct: 1  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFG 94
          SIHFEAVEARFLRASFS+FVDVLTLATKTIEDFG
Sbjct: 61 SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFG 94

[Close]

BLAST of Cp4.1LG14g06860 vs. ExPASy TrEMBL
Match: A0A5D3CJ23 (EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001520 PE=3 SV=1)

HSP 1 Score: 165 bits (417), Expect = 5.41e-50
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M PT SVASDGE  WEFSCDFEVDYESEKKASIVY AL+VDKELQPDKVKR M++S+GKL
Sbjct: 1  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFG 94
          SIHFEAVEARFLRASFS+FVDVLTLATKTIEDFG
Sbjct: 61 SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFG 94

[Close]

BLAST of Cp4.1LG14g06860 vs. TAIR 10
Match: AT5G53045.1 (unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-28
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1  MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60
          M  T    +  +  W+FSC+ +V +ESE+ A I Y +L VDKELQPDKV+R M+VS+ KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ 96
          S+HFEA+EAR LRASFSAFVDVLTLAT+TI++FGQ
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQ 95

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g06860 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g06860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553191.1	7.03e-60	100.00	uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo]	[more]
KAG6576647.1	6.41e-56	95.83	hypothetical protein SDJN03_24221, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014698.1	6.11e-54	92.71	hypothetical protein SDJN02_22327 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004146228.1	5.82e-52	92.63	uncharacterized protein LOC101217139 [Cucumis sativus] >KAE8650547.1 hypothetica...	[more]
XP_022141079.1	5.95e-52	90.63	uncharacterized protein LOC111011564 [Momordica charantia]	[more]

BLAST of Cp4.1LG14g06860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHJ5	2.88e-52	90.63	uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A0A0L7A2	1.76e-51	92.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1	[more]
A0A6J1G2C3	1.89e-50	87.50	uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]
A0A1S3CTG0	5.41e-50	88.30	uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=...	[more]
A0A5D3CJ23	5.41e-50	88.30	EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Cp4.1LG14g06860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53045.1	4.1e-28	62.11	unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.310.50		coord: 8..97 e-value: 1.9E-22 score: 81.0
None	No IPR available	PANTHER	PTHR31283:SF5	GEO08993P1	coord: 10..95
IPR015419	CTAG/Pcc1 family	PFAM	PF09341	Pcc1	coord: 18..91 e-value: 5.6E-19 score: 68.1
IPR015419	CTAG/Pcc1 family	PANTHER	PTHR31283	EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER	coord: 10..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g06860.1	Cp4.1LG14g06860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process
cellular_component	GO:0000408	EKC/KEOPS complex