Cp4.1LG14g06820 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g06820
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Vesicle transport protein
Location	Cp4.1LG14: 252233 .. 257140 (+)
RNA-Seq Expression	Cp4.1LG14g06820
Synteny	Cp4.1LG14g06820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGGAATTCCAGCCGAGACGTATTTGTCGACGACGAAGAGTGTGGTCAGAGCTTGTTGGATGAAGATTCAGAAGATCTATGCTCCCTAACTCCTGTACAGGTACTTCAAACAACCACCACAGAGCTCCGCTTGTGGAAAGTCTTATGGCTTTTGCTCTAGTTTTTCTTTTTGTTCGGTTTTCATACTGTTTTGGTCTTTTGCTGATCAGAGACTTTACGGTTTTGGAGGCTGCTTGATCGGGGGCGTGGATTTCATGATTTTGGTATGAATGAACATTTAACCTACCTCTACTTCTAATGCAATTTCATATGTGTTTATGTCATATGCATCTTCTGTATATGGGGAACTTTGATGATAATTTTGGATTTGAGCCTCAAGTTACGATCTGGGTAGGATTGGTAACGGGAGGTTTTCTTTATTTCCATTATTATTTTGGAATTTAATAGGATTTATATTATCTAACTATCCACTGGTTGGTCCTTGAGGCTTCCAGAATAAATTGGAAAACACAACAAAGAAGGAAGCCGGGATTGAATTTGGATAGAAAGCTGAGGAATTTCCTTTAAGAAGGGAATACTAAAGACAAATTAAGTCGCCAGGTCAATTGGGAGATTGTTTCTACCAATCGAAAATGGGGGACTCTTGATTGGGTATAAGGAAGAAAGTAGGACATTAAATATCAAAAGGATATGGCGACTTTTACCAACTCTGATGAATCGATGGGAGAGTAAGTGGATGTTTTACAAGTAAGGGGGATTGGGTGCTACTGCTGTCAAAGTCCATGGTCTAATATTACAAAACTGAGATGATTTATTGAGGCATCCACTAGCATTGATTTGGCAAATTTAAGGAAAACCTTGTGTTTAGAGAGACTACTGGGTAGAGTAGTCATCTCTGTTGGCAAGATTTTTAAGGTTGTTTATAGCTTCACCATATAGAAAAGGATCATATCAAATGGATATGGCGGCTTTCTGACTTTGATGAATCGTGGAATGGGATTCTATCCAGTACATAAGGGAGAATACCAAGGATGTTTTATAAGTAGGGAGCGTTGGGGACTACTGTTATCAAAGTCCATGGTCCAATATTACAAAACTGAGATGATTTATAGAGGGATTGACTGGCATTGAGGTGGCAAATTGAAGGAGAACCTTATTCTATAGAGTCCGCTGGGTAGGGGAGTCATCTCTGTTGGCAAGATTTTTAAGGTGTTTGTAGCTTCACCAAATAGAAAATGACAATAAGTAAAGCATGGGAGGATGTTCTTTGAACATGACAACCACTAAGGACATAACTGATCCGGAAATGGGTATTGAGAAAGGAGTTGTCTACAGCAATCTAGAAGGAAAGAATCCCTAAGGAAGTCAACTTCTTTATGTGGACATTATGTCATGATGGTATAAATTCAGGGGAGGGATTCATAGGAGATATATGATTTAAAAATCCAGTTAGTTTGTCCTTTGTAAGCTGTGTTGCGAATCTCAACTCAATAAAATGCAGTGCACCTAGGTTCTTGACAAGTCACTCAAAGAGGATATTATCCAATTGTTATCGAGCTGCAGAATTGAGAAGAAAGCTAAAACCATATGGGTTAATGCAGTGAAGACATTCTCCTGGGGTACTAGTGAATACAGGAGTCACAAACGATAAGTTTGTTCATTATTGGATTATCACAATCAGTAAACAATGGGACAATTCGAGGGTTAGAGTTAATTGTCAATAATATAGTAAATTGCAGGCGATTGACATTCTGGAATTTTTTCTTCATCAGTGAATTTTGTATTTTGTATTTTTTTTAATCTCACGTTCTTTCCTTTAGAGTTCCATTTGGATTTTTATGATTCTAGATGAACATACCCAGCTTTATTGACTTCTATTTTGCTCGTTATCTGAAATCGTGTTTATTAAGTAAGAAATTTGATGCGTTTGCTACATTTTCTTCTTTCTGCAGTCATTGCTTGTTTTTGCTAAGCCACTCAAATTTGCTGTCCTATTTACATTTGGCAATGTTTTAGCCGTCGGAAGGTACAACCAATTAAATTAGAAAGCTGTTGTTGTTACATTCTACATGTGTCGGCAATTAAGAATTATTATTTGGAGGCGCACTTTTGTTCACTTTCACGGCATTCTGGCTTGCATCTAATACTTCTTGTTATCTTCGATCTCATATTCTTTCAAGAAGAAGTTTATTTGTGTACAAACAAAAGGAAGATAATCGAGGGGGGAAACTTTTAATGTACTTTCACTATGTTGTTCCTTTTCATTGAGGTGTTGATATTCTAAATTGCATCTTATTTGGCAGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATAAGACTGATGTTTGATTCTGTCCGTATTTATGCGACAGCTATTTACCTGGGATGTGTTGTTCTATCTCTTATATGTGCTCTTGGGGTACGTAACGATTCTGACTATATGACATTAGAAGGAAAAACAGACTTAAATTACTAAGGCATTGAGATATTCAATGAACACTCTTCAATTTATCTGTGGAACACAGTACTAATGGCGTTTCCAATTAGGTCCCTCTTCATCTGTTCCACAAGGTTTCCAAATACAGTTCTAGCATTGTTTTTCTTTAGCAAACAAAGCATGTATCGGCCTGGGATGGACTTCTGCAAACAGTTAATGCCTCATATTTAGTCTTTTAAATGAGTTTCCTTGCTATTCATTTTTCAGATCCACAATAAGATCTTGACAGTGATTGCAATGATAAGTGAGATATGTGCACTCATATGGTACGTTTACCTTTATCATTGGCATTCCTCCATTCGATTCAAATTTCATTTAAAACTAGAGGATGAAAACTTTCCCACTGGATGAAAATGTGTTCAATTATATCTTGCGAGACCTATCTTGAATCGAAACTAGATTCGGCCATGACTTCCTCGGTTTATTCTGTTCCAGGTATACTTTGAGCTATATTCCTTTTGCCCGGAGGATGGTCTCTGAAATGATGAAACGATTTTGTGACACAGAACTATAGACAATGAAAGTTGCGGTGATGATTGATGATTCGGTGTCTTCAAGATATGGGACTGCCTTTTGTCTTCATTGTTTTTACATTTTAGTGAGCACAAGATCAGTTGGAGATTTTTTTTTTTTTTTTTTTTTTTGGTTGGAGTTGATTTGTCCACGAACACGTATAATCCAACGCCAGTTCAATGCTTGTGCTAAATTTCTAAATATAACATCATTCTTTTCTCCAAATTAACTCAAGGTACTTCTCTCTTTTTATATCTCAATGGGAAGTATTTTCCAGGTAAAGCCAAGTCAGAGCGTTTAGAATGGAAGTAGGGAGCCCACTCGTCATGCAATATGCTTCAGCTTATTATCTGTTGAAGCCATTAAACCACAGATCCAAAATCAGAAAAACTGAGTCATTCTCCAGGTTAGCATCAACATGTACTTTTTCTAAAGATGTTGATTTGACCCTTTACATGAAATTTCTACATTATTCCATGTTCAACTACCTCTTAATAATAAATTCAAAATGCTGAAGTCTTAGGCTAAAATATTTTTGTTCTTTTATACACATTCTTAACATTGAAAACCACAGACAACCAACATCAATGGACAAGGAAAAGGGAAAAAAAACAAGGGTAGAAATAAACAGGCTTGTTAGAAAGCCTGTCTTTCCTTTCCTGAATGTCTTGCCATCTAGCATACCTTTCAGTCAGACACATACACGTAATGATATTTCATTTAGGTTAACTGCTGGGCTGCAAACCCATAAAAATCAACAGCAAAGGAAATCAGATCAGAGCTTCGAGGTTTTGGCTATATTTTAATGGCCACTTGCCAATTAGGTTCTGAAAGTGAAATCCAGAGGTATCATGCTTGTGTGATCTGTTACGACTGAAGAATTTATTAAATATTTGTATATGACCCAAACCTTACATCATAACACCATGTGGAAAACTTTTCCACCTACCTACCCATGTGGGGGATTTTTCCTTCTTCAACTACCAAACCTTTCTCTTCCAAGTTGATGAAACTGTCTTTTTAATTATTGGCATAAACTCACTACATTCAAGGTAACACATGTCTGCTATACTATGCATATGGCCCATGTTACACATGCATTTTACCACAATGCCCTTCTCTGATAATGATGTAGGCTCTAATGCTTTAACCTTTAGTGGAGCTTGTTCTGTGGGAAATCTGATTGTGTCTTTTGAATCTTTTGGACTATATGAAACTTCTGCGAGGTTGGGGGAGGAGCAGGGGCATGGGAATCAATTGTTTGACCTGTGATTACAAAAAAGTTGGATGCTTTTTTTGCATTTTGGACAGATGGTTGGGCTATCAGTGTCTAAACGTGAAAAACAAATGCACTATGTAGAAAGAATCTCTTTGGTTTTGGTGGGGAGGGAGTGGATCTGCCTCCACTCTCTTTGAATCTTTTAGATTAATATATACATACAACAATTGAAAAGGGGTTTTGATTTCAAACCCAGATCATATGTTAAGCCTCAAGATTTTGAACAATCTTGGCTGTTTGAGGAACAGAAAAAAAACAATGAAGTGAGCTCATCCCATTAATTCTGTTTGATAGGAACACAATATATGTGTAGTGGCAAAGAAACTGTGTGATAGAGAAGAAGATAAGTTTAAAGATAATTGGATGAGTGGCTGTGGTTGCAAAACTTGAAAAATAGACAGTGCAACCAATACTGGAAATGTGGTACCTTTCTTTCTCCTTCCTTTTCTTTGTCTTTGCCTCTTGTTGCCCTCCACTTTTTGGTGTTTGTCCTCCTGATGAATGCATGTGCTCTGTTTGGCTGTTCTCTTTTTCTGGAAGCACTTGTCTTCTTTTCTCTTTTTCCAGTTTTATGGAAACTGAAACATCAAATTGTTATTAATAAACACACAC

mRNA sequence

ATGTGGAGGAATTCCAGCCGAGACGTATTTGTCGACGACGAAGAGTGTGGTCAGAGCTTGTTGGATGAAGATTCAGAAGATCTATGCTCCCTAACTCCTGTACAGAGACTTTACGGTTTTGGAGGCTGCTTGATCGGGGGCGTGGATTTCATGATTTTGGAGTCACAAACGATAAGTTTGTTCATTATTGGATTATCACAATCAGTAAACAATGGGACAATTCGAGGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATAAGACTGATGTTTGATTCTGTCCGTATTTATGCGACAGCTATTTACCTGGGATGTGTTGTTCTATCTCTTATATGTGCTCTTGGGATCCACAATAAGATCTTGACAGTGATTGCAATGATAAGTGAGATATGTGCACTCATATGGTATACTTTGAGCTATATTCCTTTTGCCCGGAGGATGGTCTCTGAAATGATGAAACGATTTTGTGACACAGAACTATAGACAATGAAAGTTGCGGTGATGATTGATGATTCGGTGTCTTCAAGATATGGGACTGCCTTTTGTCTTCATTGTTTTTACATTTTAGTGAGCACAAGATCAGTTGGAGATTTTTTTTTTTTTTTTTTTTTTTGGTTGGAGTTGATTTGTCCACGAACACGTATAATCCAACGCCAGTTCAATGCTTGTGCTAAATTTCTAAATATAACATCATTCTTTTCTCCAAATTAACTCAAGGTACTTCTCTCTTTTTATATCTCAATGGGAAGTATTTTCCAGGTAAAGCCAAGTCAGAGCGTTTAGAATGGAAGTAGGGAGCCCACTCGTCATGCAATATGCTTCAGCTTATTATCTGTTGAAGCCATTAAACCACAGATCCAAAATCAGAAAAACTGAGTCATTCTCCAGGTTAACTGCTGGGCTGCAAACCCATAAAAATCAACAGCAAAGGAAATCAGATCAGAGCTTCGAGGTTTTGGCTATATTTTAATGGCCACTTGCCAATTAGGTTCTGAAAGTGAAATCCAGAGGTATCATGCTTGTGTGATCTGTTACGACTGAAGAATTTATTAAATATTTGTATATGACCCAAACCTTACATCATAACACCATGTGGAAAACTTTTCCACCTACCTACCCATGTGGGGGATTTTTCCTTCTTCAACTACCAAACCTTTCTCTTCCAAGTTGATGAAACTGTCTTTTTAATTATTGGCATAAACTCACTACATTCAAGGTAACACATGTCTGCTATACTATGCATATGGCCCATGTTACACATGCATTTTACCACAATGCCCTTCTCTGATAATGATGTAGGCTCTAATGCTTTAACCTTTAGTGGAGCTTGTTCTGTGGGAAATCTGATTGTGTCTTTTGAATCTTTTGGACTATATGAAACTTCTGCGAGGTTGGGGGAGGAGCAGGGGCATGGGAATCAATTGTTTGACCTGTGATTACAAAAAAGTTGGATGCTTTTTTTGCATTTTGGACAGATGGTTGGGCTATCAGTGTCTAAACGTGAAAAACAAATGCACTATGTAGAAAGAATCTCTTTGGTTTTGGTGGGGAGGGAGTGGATCTGCCTCCACTCTCTTTGAATCTTTTAGATTAATATATACATACAACAATTGAAAAGGGGTTTTGATTTCAAACCCAGATCATATGTTAAGCCTCAAGATTTTGAACAATCTTGGCTGTTTGAGGAACAGAAAAAAAACAATGAAGTGAGCTCATCCCATTAATTCTGTTTGATAGGAACACAATATATGTGTAGTGGCAAAGAAACTGTGTGATAGAGAAGAAGATAAGTTTAAAGATAATTGGATGAGTGGCTGTGGTTGCAAAACTTGAAAAATAGACAGTGCAACCAATACTGGAAATGTGGTACCTTTCTTTCTCCTTCCTTTTCTTTGTCTTTGCCTCTTGTTGCCCTCCACTTTTTGGTGTTTGTCCTCCTGATGAATGCATGTGCTCTGTTTGGCTGTTCTCTTTTTCTGGAAGCACTTGTCTTCTTTTCTCTTTTTCCAGTTTTATGGAAACTGAAACATCAAATTGTTATTAATAAACACACAC

Coding sequence (CDS)

ATGTGGAGGAATTCCAGCCGAGACGTATTTGTCGACGACGAAGAGTGTGGTCAGAGCTTGTTGGATGAAGATTCAGAAGATCTATGCTCCCTAACTCCTGTACAGAGACTTTACGGTTTTGGAGGCTGCTTGATCGGGGGCGTGGATTTCATGATTTTGGAGTCACAAACGATAAGTTTGTTCATTATTGGATTATCACAATCAGTAAACAATGGGACAATTCGAGGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATAAGACTGATGTTTGATTCTGTCCGTATTTATGCGACAGCTATTTACCTGGGATGTGTTGTTCTATCTCTTATATGTGCTCTTGGGATCCACAATAAGATCTTGACAGTGATTGCAATGATAAGTGAGATATGTGCACTCATATGGTATACTTTGAGCTATATTCCTTTTGCCCGGAGGATGGTCTCTGAAATGATGAAACGATTTTGTGACACAGAACTATAG

Protein sequence

MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTISLFIIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL

Homology

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BLAST of Cp4.1LG14g06820 vs. ExPASy Swiss-Prot
Match: Q8WV19 (Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.8e-12
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 0


Query: 12  DDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQT------ISLFIIGL 71
           DDEE G   L     D  SL+   RL  F  C + GV F IL +        I LF +  
Sbjct: 12  DDEEQG---LTAQVLDASSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGGIKLFAVFY 71

Query: 72  SQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVIA 131
           +   N   +  T FL GP +Q++ MF++ R+ AT + L C + +L  AL  H K L V+ 
Sbjct: 72  TLG-NLAALASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLF 131

Query: 132 MISEICALIWYTLSYIPFARRMV 149
            I +  ++ WY+LSYIP+AR  V
Sbjct: 132 CILQFLSMTWYSLSYIPYARDAV 150

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BLAST of Cp4.1LG14g06820 vs. ExPASy Swiss-Prot
Match: Q5U3Y5 (Vesicle transport protein SFT2A OS=Rattus norvegicus OX=10116 GN=Sft2d1 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.8e-11
Identity = 51/143 (35.66%), Postives = 74/143 (51.75%), Query Frame = 0


Query: 12  DDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILES------QTISLFIIGL 71
           DDEE G   L     D  SL+   RL  F  C + G+ F IL +        + LF +  
Sbjct: 12  DDEEQG---LTAQVLDASSLSFNTRLKWFVICFVAGIFFSILGTGLLWLPNGVKLFAVFY 71

Query: 72  SQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVIA 131
           +   N   +  T FL GP +Q++ MF++ R+ AT I L C+V +L  AL    K L ++ 
Sbjct: 72  TLG-NLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLF 131

Query: 132 MISEICALIWYTLSYIPFARRMV 149
            I +  ++ WY+LSYIP+AR  V
Sbjct: 132 CILQFLSMTWYSLSYIPYARDAV 150

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BLAST of Cp4.1LG14g06820 vs. ExPASy Swiss-Prot
Match: Q5SSN7 (Vesicle transport protein SFT2A OS=Mus musculus OX=10090 GN=Sft2d1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 0


Query: 12  DDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILES------QTISLFIIGL 71
           DDEE G   L     D  SL+   RL  F  C + G+ F  L +        + LF +  
Sbjct: 12  DDEEQG---LTAQVLDASSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNGMKLFAVFY 71

Query: 72  SQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVIA 131
           +   N   +  T FL GP +Q++ MF++ R+ AT I L C+V +L  AL    K L ++ 
Sbjct: 72  TLG-NLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLF 131

Query: 132 MISEICALIWYTLSYIPFARRMV 149
            I +  ++ WY+LSYIP+AR  V
Sbjct: 132 CILQFLSMTWYSLSYIPYARDAV 150

[Close]

BLAST of Cp4.1LG14g06820 vs. ExPASy Swiss-Prot
Match: O95562 (Vesicle transport protein SFT2B OS=Homo sapiens OX=9606 GN=SFT2D2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-10
Identity = 49/146 (33.56%), Postives = 73/146 (50.00%), Query Frame = 0


Query: 20  LLDEDSEDLCSLTPV---------QRLYGFGGCLIGGVDFMILESQTI-----SLFIIGL 79
           L  +D+ED   L+ V          R+ GF  C   G+   +L +  +      L +  +
Sbjct: 8   LSGQDTEDRSGLSEVVEASSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKGLHLFAV 67

Query: 80  SQSVNN-GTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVI 139
             +  N  +I  T FL GP +Q++ MF+  R+ AT + L C  L+L  A   HNK L +I
Sbjct: 68  FYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHNKGLALI 127

Query: 140 AMISEICALIWYTLSYIPFARRMVSE 151
             I +  AL WY+LS+IPFAR  V +
Sbjct: 128 FCILQSLALTWYSLSFIPFARDAVKK 153

[Close]

BLAST of Cp4.1LG14g06820 vs. ExPASy Swiss-Prot
Match: Q8VD57 (Vesicle transport protein SFT2B OS=Mus musculus OX=10090 GN=Sft2d2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-09
Identity = 49/147 (33.33%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 20  LLDEDSEDLCSLTPV---------QRLYGFGGCLIGGVDFMILES-------QTISLFII 79
           L  +D+ED   L+ V          R+ GF  C   G+   +L +       + + LF +
Sbjct: 8   LSGQDTEDRSGLSEVVEASSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKGLGLFAV 67

Query: 80  GLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTV 139
             +   N  +I  T FL GP +Q++ MF+  R+ AT + L C  L+L C+  + NK L +
Sbjct: 68  FYTLG-NIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTL-CSAFLWNKGLAL 127

Query: 140 IAMISEICALIWYTLSYIPFARRMVSE 151
           I  I +  AL WY+LSYIP+AR  V +
Sbjct: 128 IFCILQSLALTWYSLSYIPYARDAVKK 152

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BLAST of Cp4.1LG14g06820 vs. NCBI nr
Match: XP_023553014.1 (vesicle transport protein SFT2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266 bits (681), Expect = 5.38e-89
Identity = 141/167 (84.43%), Postives = 143/167 (85.63%), Query Frame = 0


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTIS- 60
           MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMIL     + 
Sbjct: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILSLLVFAK 60

Query: 61  ------LFIIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120
                 LF  G     N   +  TAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA
Sbjct: 61  PLKFAVLFTFG-----NVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120

Query: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 160
           LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL
Sbjct: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 162

[Close]

BLAST of Cp4.1LG14g06820 vs. NCBI nr
Match: XP_022922732.1 (vesicle transport protein SFT2B-like [Cucurbita moschata] >KAG6576661.1 Vesicle transport protein SFT2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263 bits (672), Expect = 1.27e-87
Identity = 140/167 (83.83%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTIS- 60
           MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGV FMIL     + 
Sbjct: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60

Query: 61  ------LFIIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120
                 LF  G     N   +  TAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA
Sbjct: 61  PLKFAVLFTFG-----NVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120

Query: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 160
           LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL
Sbjct: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 162

[Close]

BLAST of Cp4.1LG14g06820 vs. NCBI nr
Match: XP_022984529.1 (vesicle transport protein SFT2B-like [Cucurbita maxima])

HSP 1 Score: 261 bits (667), Expect = 7.32e-87
Identity = 138/167 (82.63%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTIS- 60
           MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGV FMIL     + 
Sbjct: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60

Query: 61  ------LFIIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120
                 LF  G     N   +  TAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLS+ICA
Sbjct: 61  PLKFAVLFTFG-----NVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSIICA 120

Query: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 160
           LGIHNKILTVIAMISEICAL+WYTLSYIPFARRMVSEMMKRFCDTEL
Sbjct: 121 LGIHNKILTVIAMISEICALMWYTLSYIPFARRMVSEMMKRFCDTEL 162

[Close]

BLAST of Cp4.1LG14g06820 vs. NCBI nr
Match: XP_038880533.1 (vesicle transport protein SFT2B [Benincasa hispida])

HSP 1 Score: 227 bits (578), Expect = 2.56e-73
Identity = 126/167 (75.45%), Postives = 132/167 (79.04%), Query Frame = 0


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTIS- 60
           MW+  SR VFVDDEE GQSLLDEDSEDLCSLTPVQRLY FGGCL GGV  MIL     + 
Sbjct: 1   MWK-LSRGVFVDDEEHGQSLLDEDSEDLCSLTPVQRLYAFGGCLTGGVVCMILSLLVFAK 60

Query: 61  ------LFIIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120
                 LF  G     N   +  TAFLFGPGQQIR+MFDSVRIYATAIYLGCVVL LICA
Sbjct: 61  PLKFAVLFTFG-----NVLAVGSTAFLFGPGQQIRMMFDSVRIYATAIYLGCVVLGLICA 120

Query: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 160
           L IHNKILTVIAMISEICALIWY+LSYIPFARRMVSE+M RFCDTEL
Sbjct: 121 LWIHNKILTVIAMISEICALIWYSLSYIPFARRMVSELMIRFCDTEL 161

[Close]

BLAST of Cp4.1LG14g06820 vs. NCBI nr
Match: XP_008441622.1 (PREDICTED: vesicle transport protein SFT2B [Cucumis melo])

HSP 1 Score: 219 bits (557), Expect = 4.03e-70
Identity = 121/167 (72.46%), Postives = 130/167 (77.84%), Query Frame = 0


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTIS- 60
           MW+ S   VFVDDEE  QSLLDEDSEDLCSLTPVQRLY FGGCL GGV  MIL     + 
Sbjct: 1   MWKLSDG-VFVDDEERSQSLLDEDSEDLCSLTPVQRLYAFGGCLTGGVVCMILSLLVFAK 60

Query: 61  ------LFIIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120
                 LF  G     N   +  TAFLFGPGQQIR+MFDSVRI+ATAIYLGCVVL+LICA
Sbjct: 61  PLKFAVLFTFG-----NVLAVGSTAFLFGPGQQIRMMFDSVRIFATAIYLGCVVLALICA 120

Query: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 160
           L IHNKILTV AMISEICALIWY+LSYIPFARRMVS++M RFCDTEL
Sbjct: 121 LWIHNKILTVFAMISEICALIWYSLSYIPFARRMVSQLMVRFCDTEL 161

[Close]

BLAST of Cp4.1LG14g06820 vs. ExPASy TrEMBL
Match: A0A6J1E453 (Vesicle transport protein OS=Cucurbita moschata OX=3662 GN=LOC111430637 PE=3 SV=1)

HSP 1 Score: 263 bits (672), Expect = 6.13e-88
Identity = 140/167 (83.83%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTIS- 60
           MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGV FMIL     + 
Sbjct: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60

Query: 61  ------LFIIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120
                 LF  G     N   +  TAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA
Sbjct: 61  PLKFAVLFTFG-----NVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120

Query: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 160
           LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL
Sbjct: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 162

[Close]

BLAST of Cp4.1LG14g06820 vs. ExPASy TrEMBL
Match: A0A6J1JAS7 (Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111482794 PE=3 SV=1)

HSP 1 Score: 261 bits (667), Expect = 3.54e-87
Identity = 138/167 (82.63%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTIS- 60
           MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGV FMIL     + 
Sbjct: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVVFMILSLLVFAK 60

Query: 61  ------LFIIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120
                 LF  G     N   +  TAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLS+ICA
Sbjct: 61  PLKFAVLFTFG-----NVLAVGSTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSIICA 120

Query: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 160
           LGIHNKILTVIAMISEICAL+WYTLSYIPFARRMVSEMMKRFCDTEL
Sbjct: 121 LGIHNKILTVIAMISEICALMWYTLSYIPFARRMVSEMMKRFCDTEL 162

[Close]

BLAST of Cp4.1LG14g06820 vs. ExPASy TrEMBL
Match: A0A6J1CHR6 (Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV=1)

HSP 1 Score: 219 bits (557), Expect = 1.95e-70
Identity = 121/167 (72.46%), Postives = 131/167 (78.44%), Query Frame = 0


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTIS- 60
           MW+  SR VF DDEE GQSLLDEDSEDLCSL+PVQRLYGFG CL GGV  M+L     + 
Sbjct: 1   MWK-LSRGVFGDDEERGQSLLDEDSEDLCSLSPVQRLYGFGACLTGGVVCMVLSLLVFAK 60

Query: 61  ------LFIIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120
                 LF  G     N   +  TAFLFGPGQQIR+MFDSVRIYATAIYLGCVVL+LICA
Sbjct: 61  PIKFAVLFTFG-----NVLAVGSTAFLFGPGQQIRMMFDSVRIYATAIYLGCVVLALICA 120

Query: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 160
           L IHNKILTVIA+ISEICALIWY+LSYIPFARRMVSE+M R CDTEL
Sbjct: 121 LWIHNKILTVIAIISEICALIWYSLSYIPFARRMVSELMIRLCDTEL 161

[Close]

BLAST of Cp4.1LG14g06820 vs. ExPASy TrEMBL
Match: A0A1S3B3W0 (Vesicle transport protein OS=Cucumis melo OX=3656 GN=LOC103485702 PE=3 SV=1)

HSP 1 Score: 219 bits (557), Expect = 1.95e-70
Identity = 121/167 (72.46%), Postives = 130/167 (77.84%), Query Frame = 0


Query: 1   MWRNSSRDVFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTIS- 60
           MW+ S   VFVDDEE  QSLLDEDSEDLCSLTPVQRLY FGGCL GGV  MIL     + 
Sbjct: 1   MWKLSDG-VFVDDEERSQSLLDEDSEDLCSLTPVQRLYAFGGCLTGGVVCMILSLLVFAK 60

Query: 61  ------LFIIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICA 120
                 LF  G     N   +  TAFLFGPGQQIR+MFDSVRI+ATAIYLGCVVL+LICA
Sbjct: 61  PLKFAVLFTFG-----NVLAVGSTAFLFGPGQQIRMMFDSVRIFATAIYLGCVVLALICA 120

Query: 121 LGIHNKILTVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 160
           L IHNKILTV AMISEICALIWY+LSYIPFARRMVS++M RFCDTEL
Sbjct: 121 LWIHNKILTVFAMISEICALIWYSLSYIPFARRMVSQLMVRFCDTEL 161

[Close]

BLAST of Cp4.1LG14g06820 vs. ExPASy TrEMBL
Match: A0A6J1HVF1 (Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111467788 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 5.58e-70
Identity = 119/159 (74.84%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 9   VFVDDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTIS-------LF 68
           VF DDEE GQSLLDEDSEDLCSLTPVQRLYGFGGCL GGV  MI+     +       LF
Sbjct: 8   VFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVSLLVFAKPIKFAALF 67

Query: 69  IIGLSQSVNNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKIL 128
             G     N   +  TAFLFGPGQQ+R+MFDSVRIYATAIYLGCVVL+LICAL IHNKIL
Sbjct: 68  TFG-----NVLAVGSTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKIL 127

Query: 129 TVIAMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 160
           TVIAM SEICALIWY+LSYIPFARRMVSE+M RFCDTEL
Sbjct: 128 TVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 161

[Close]

BLAST of Cp4.1LG14g06820 vs. TAIR 10
Match: AT5G24170.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 148.3 bits (373), Expect = 5.3e-36
Identity = 83/156 (53.21%), Postives = 105/156 (67.31%), Query Frame = 0


Query: 12  DDEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQTISLFIIGLSQSV-- 71
           D +    S L++ SE LC+L+  QR+YGF   L  G+  M L     S+ + G+      
Sbjct: 13  DGDGTTDSFLEDGSEGLCALSTTQRMYGFAASLATGLLLMFL-----SMIVFGIPIKFAL 72

Query: 72  -----NNGTIRGTAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVI 131
                N   I  TAFL GP QQ+ +MFD VR  AT+IY+GCVV++LICAL IH+KILTV+
Sbjct: 73  LFTFGNVLAIGSTAFLMGPEQQMSMMFDPVRFLATSIYIGCVVVALICALLIHSKILTVL 132

Query: 132 AMISEICALIWYTLSYIPFARRMVSEMMKRFCDTEL 161
           A++ EICALIWY+LSYIPFARRMVSE+M R CDTEL
Sbjct: 133 AILCEICALIWYSLSYIPFARRMVSEIMIRLCDTEL 163

[Close]

BLAST of Cp4.1LG14g06820 vs. TAIR 10
Match: AT5G23550.1 (Got1/Sft2-like vescicle transport protein family )

HSP 1 Score: 115.5 bits (288), Expect = 3.8e-26
Identity = 67/149 (44.97%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 13  DEECGQSLLDEDSEDLCSLTPVQRLYGFGGCLIGGVDFMILESQT-ISLFIIGLSQSVNN 72
           DEE   S + ED    C+LT  QR YGF  CL  G+   +L      +    G++ ++ N
Sbjct: 27  DEESSLSFM-EDLNRNCALTTKQRFYGFAICLSAGLTCTLLSMLVFFNPVKFGITFTLGN 86

Query: 73  GTIRG-TAFLFGPGQQIRLMFDSVRIYATAIYLGCVVLSLICALGIHNKILTVIAMISEI 132
               G TAFL GP +Q+ +M D  RIYATA+YL  ++++L CAL + NK+LT++A+I E 
Sbjct: 87  LMALGSTAFLIGPQRQVTMMLDPARIYATALYLASIIIALFCALYVRNKLLTLLAIILEF 146

Query: 133 CALIWYTLSYIPFARRMVSEMMKRFCDTE 160
             LIWY+LSYIPFAR MVS++     DTE
Sbjct: 147 TGLIWYSLSYIPFARTMVSKIFMTCFDTE 174

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g06820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WV19	6.8e-12	37.06	Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1	[more]
Q5U3Y5	5.8e-11	35.66	Vesicle transport protein SFT2A OS=Rattus norvegicus OX=10116 GN=Sft2d1 PE=2 SV=...	[more]
Q5SSN7	2.9e-10	34.97	Vesicle transport protein SFT2A OS=Mus musculus OX=10090 GN=Sft2d1 PE=1 SV=1	[more]
O95562	4.9e-10	33.56	Vesicle transport protein SFT2B OS=Homo sapiens OX=9606 GN=SFT2D2 PE=1 SV=1	[more]
Q8VD57	5.4e-09	33.33	Vesicle transport protein SFT2B OS=Mus musculus OX=10090 GN=Sft2d2 PE=1 SV=1	[more]

BLAST of Cp4.1LG14g06820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553014.1	5.38e-89	84.43	vesicle transport protein SFT2B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022922732.1	1.27e-87	83.83	vesicle transport protein SFT2B-like [Cucurbita moschata] >KAG6576661.1 Vesicle ...	[more]
XP_022984529.1	7.32e-87	82.63	vesicle transport protein SFT2B-like [Cucurbita maxima]	[more]
XP_038880533.1	2.56e-73	75.45	vesicle transport protein SFT2B [Benincasa hispida]	[more]
XP_008441622.1	4.03e-70	72.46	PREDICTED: vesicle transport protein SFT2B [Cucumis melo]	[more]

BLAST of Cp4.1LG14g06820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E453	6.13e-88	83.83	Vesicle transport protein OS=Cucurbita moschata OX=3662 GN=LOC111430637 PE=3 SV=...	[more]
A0A6J1JAS7	3.54e-87	82.63	Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111482794 PE=3 SV=1	[more]
A0A6J1CHR6	1.95e-70	72.46	Vesicle transport protein OS=Momordica charantia OX=3673 GN=LOC111011745 PE=3 SV...	[more]
A0A1S3B3W0	1.95e-70	72.46	Vesicle transport protein OS=Cucumis melo OX=3656 GN=LOC103485702 PE=3 SV=1	[more]
A0A6J1HVF1	5.58e-70	74.84	Vesicle transport protein OS=Cucurbita maxima OX=3661 GN=LOC111467788 PE=3 SV=1	[more]

BLAST of Cp4.1LG14g06820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24170.1	5.3e-36	53.21	Got1/Sft2-like vescicle transport protein family	[more]
AT5G23550.1	3.8e-26	44.97	Got1/Sft2-like vescicle transport protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007305	Vesicle transport protein, Got1/SFT2-like	PFAM	PF04178	Got1	coord: 73..152 e-value: 2.0E-24 score: 86.2
None	No IPR available	PANTHER	PTHR23137:SF29	VESICLE TRANSPORT PROTEIN	coord: 22..160
IPR011691	Vesicle transport protein SFT2	PANTHER	PTHR23137	UNCHARACTERIZED	coord: 22..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g06820.1	Cp4.1LG14g06820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane