Cp4.1LG14g05890 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG14g05890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionMADS-box transcription factor 6-like
LocationCp4.1LG14: 725287 .. 726883 (-)
RNA-Seq ExpressionCp4.1LG14g05890
SyntenyCp4.1LG14g05890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTATTGAAGAAGGCCAGTGAGCTGTCTGTGCTCTGTGATGTGGACGTTGCTCTCATCATCTTCTCTAGTCGGGGAAAGCTCTTTGAATTTGGCAGCACTGAGTCAGTATATTATATATATATCTTCTTACTCAATTGAATATAACCCTCTTTTTGTTTTCTTGTTTTGTAATGGTAATTCACTCCCATGATTAGCATGAACAAGATCCTTGAGAGGTACCGCCACCGATGTTACAACATTGAATCAACCACCGATCTTCACCACATTGTTTGTTTTAGTTCGTTACGTATCGTCATCAATCTAATAATTTTAAGACTCGTCTATTAAGGAGAGATTTTCACACCCTTGTAATGAACGTTCCTTTCTCCAGCCGATGTGAGATCTTGCAATCCGACCCTCTTGGGAGCCCAGTGTCACAGTCGCACTCTTGATGATTGCAGACTTGCGATTGTGCGGCACTCACTTTCCAACGACAAGTGAGTTAAGCTAATTCGTTCTTACGTCGCCTACGACCAAACGACGTATGCTCGAGCCGCTGGCCTTGGTTTAAGAAGAAGGCTTTAGAAAATGAGGGCAGAGAAAGATTTTGAAAAAGACGTTATTATATGCAAGCAAGAGAGTAACAACAACTGCTCACATGCTCACAGTATATAACTATTAGTAGGGAGAAGTTGACAACTAATTATATCCCCTATAGTACATTCTAAGGCATTTCATGTCTAGCCGGCCTAGACATGATTTTTTCAAAACGTCATACTCTCTAGAAATACAAAAATAAAACACTAGAACATAGAAAAACATAAAGGATTTGGCTTTTCATGGGCATGCGGCCATGGACAACACGCCTTGGACAAGTATGACCGTGACACCCAGCGTTCTCGCTAGCATACCATTTAGTGTCTGGCTTTAATACCATTTGTAACAGCTCAAGTATACCACTAGCAAATATTGTTTGTTTTGACTCGTTACTTATCACCGACAACCTCACAATTTTAAGACATGTCTACTAGAGATATTTTTAGAATTTGTGTCTTATTTGAGAGATGTTTGAATTAACTTACAAAACTAAGGCTAACTATTATTTTGAGTACAATGATTATCCACATCTTGATAATGCAGATAGAAGAGGTGTCAAAGGTAAAGAGCAAAATACGAATCTCTTCAGCGTTCCCATAGGTTACTTAATTAAACATGTTAATCAAGATTTTATATATTTTTTTGTTGGAAAATTAGGGAGCAATTATTGTTTGATGTGGTTTGTGAATATGAAGGAACCTTGTTGGAGAAGAACTTGAAGCACTGAGCCTAAAAGAGTTGCATACTCTGGAGAAACAATTGGACAAAACTCTTTCACGAATCAGACACCGGAAGGTATAACTCAGGATAAGGATTGGGCTTTCCTTCTATTATCGTTGTGTTGGACTCACTAAATTCATTACAATAATGATTCCTTGTATGCAGGTTGAGATAATGCTTCAAAAAATAGCAGACTTGAGTTTTTTTTTTTTTTTTTTTTGTTTCGTTTTTGGCATCAGGTGGAAGGACAAGAACGCATGCAACAAAACGAAGAACAAGGAGGAGAAGAAGAATAA

mRNA sequence

ATGGATAGAAGAGGTGTCAAAGGTAAAGAGCAAAATACGAATCTCTTCAGCGTTCCCATAGGGAGCAATTATTGTTTGATGAACCTTGTTGGAGAAGAACTTGAAGCACTGAGCCTAAAAGAGTTGCATACTCTGGAGAAACAATTGGACAAAACTCTTTCACGAATCAGACACCGGAAGGTGGAAGGACAAGAACGCATGCAACAAAACGAAGAACAAGGAGGAGAAGAAGAATAA

Coding sequence (CDS)

ATGGATAGAAGAGGTGTCAAAGGTAAAGAGCAAAATACGAATCTCTTCAGCGTTCCCATAGGGAGCAATTATTGTTTGATGAACCTTGTTGGAGAAGAACTTGAAGCACTGAGCCTAAAAGAGTTGCATACTCTGGAGAAACAATTGGACAAAACTCTTTCACGAATCAGACACCGGAAGGTGGAAGGACAAGAACGCATGCAACAAAACGAAGAACAAGGAGGAGAAGAAGAATAA

Protein sequence

MDRRGVKGKEQNTNLFSVPIGSNYCLMNLVGEELEALSLKELHTLEKQLDKTLSRIRHRKVEGQERMQQNEEQGGEEE
Homology
[Close]
BLAST of Cp4.1LG14g05890 vs. NCBI nr
Match: KAG7014799.1 (MADS-box transcription factor 17, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 5.87e-11
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 28 NLVGEELEALSLKELHTLEKQLDKTLSRIRHRKVE 62
          NLVGEELEALSLKELHTLEKQLDKTLS+ RHRKVE
Sbjct: 62 NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVE 96

[Close]
BLAST of Cp4.1LG14g05890 vs. NCBI nr
Match: KAG6576757.1 (MADS-box transcription factor 17, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 1.06e-10
Identity = 46/78 (58.97%), Postives = 47/78 (60.26%), Query Frame = 0 

Query: 28  NLVGEELEALSLKELHTLEKQLDKTLSRIRHRKVE------------------------- 78
           NLVGEELEALSLKELHTLEKQLDKTLS+ RHRKVE                         
Sbjct: 92  NLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKEQELGDVNTQLKSK 151

[Close]
BLAST of Cp4.1LG14g05890 vs. NCBI nr
Match: XP_022922550.1 (MADS-box transcription factor 6-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 2.21e-10
Identity = 45/79 (56.96%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 28  NLVGEELEALSLKELHTLEKQLDKTLSRIRHRKVE------------------------- 78
           NLVGEELEALS+KELHTLEKQLDKTLS+ RHRKVE                         
Sbjct: 121 NLVGEELEALSIKELHTLEKQLDKTLSQTRHRKVEIMLQKIADTRKMEQELGDVNTQLKS 180

[Close]
BLAST of Cp4.1LG14g05890 vs. NCBI nr
Match: XP_008439145.1 (PREDICTED: MADS-box transcription factor 17-like [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 7.79e-06
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 28  NLVGEELEALSLKELHTLEKQLDKTLSRIRHRKVE 62
           N +GEELE LSLKELH LEKQLDKTLS+ R RK E
Sbjct: 108 NFLGEELEPLSLKELHNLEKQLDKTLSQARQRKAE 142

[Close]
BLAST of Cp4.1LG14g05890 vs. NCBI nr
Match: KAA0033595.1 (MADS-box transcription factor 17-like [Cucumis melo var. makuwa] >TYK22261.1 MADS-box transcription factor 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 1.41e-05
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 28  NLVGEELEALSLKELHTLEKQLDKTLSRIRHRK 60
           N +GEELE LSLKELH LEKQLDKTLS+ R RK
Sbjct: 108 NFLGEELEPLSLKELHNLEKQLDKTLSQARQRK 140

[Close]
BLAST of Cp4.1LG14g05890 vs. ExPASy TrEMBL
Match: A0A6J1E935 (MADS-box transcription factor 6-like OS=Cucurbita moschata OX=3662 GN=LOC111430519 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.07e-10
Identity = 45/79 (56.96%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 28  NLVGEELEALSLKELHTLEKQLDKTLSRIRHRKVE------------------------- 78
           NLVGEELEALS+KELHTLEKQLDKTLS+ RHRKVE                         
Sbjct: 121 NLVGEELEALSIKELHTLEKQLDKTLSQTRHRKVEIMLQKIADTRKMEQELGDVNTQLKS 180

[Close]
BLAST of Cp4.1LG14g05890 vs. ExPASy TrEMBL
Match: A0A1S3AY43 (MADS-box transcription factor 17-like OS=Cucumis melo OX=3656 GN=LOC103484028 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.77e-06
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 28  NLVGEELEALSLKELHTLEKQLDKTLSRIRHRKVE 62
           N +GEELE LSLKELH LEKQLDKTLS+ R RK E
Sbjct: 108 NFLGEELEPLSLKELHNLEKQLDKTLSQARQRKAE 142

[Close]
BLAST of Cp4.1LG14g05890 vs. ExPASy TrEMBL
Match: A0A5D3DF02 (MADS-box transcription factor 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold440G00130 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.82e-06
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 28  NLVGEELEALSLKELHTLEKQLDKTLSRIRHRK 60
           N +GEELE LSLKELH LEKQLDKTLS+ R RK
Sbjct: 108 NFLGEELEPLSLKELHNLEKQLDKTLSQARQRK 140

[Close]
BLAST of Cp4.1LG14g05890 vs. ExPASy TrEMBL
Match: A0A6J1CJS1 (MADS-box transcription factor 6-like OS=Momordica charantia OX=3673 GN=LOC111011649 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.26e-06
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 28  NLVGEELEALSLKELHTLEKQLDKTLSRIRHRKVE 62
           N +GEELE L+LKELH LEKQLDKTLS+ R RK E
Sbjct: 108 NFLGEELEPLNLKELHNLEKQLDKTLSQARQRKAE 142

[Close]
BLAST of Cp4.1LG14g05890 vs. ExPASy TrEMBL
Match: A0A067JEN4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26182 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.45e-04
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 28  NLVGEELEALSLKELHTLEKQLDKTLSRIRHRKV-EGQE 65
           N++GEELE LS+KEL  +EKQLD+TLS+ R RK+ EGQE
Sbjct: 110 NMLGEELELLSMKELQKIEKQLDRTLSQARKRKLKEGQE 148

[Close]
BLAST of Cp4.1LG14g05890 vs. TAIR 10
Match: AT3G61120.1 (AGAMOUS-like 13 )

HSP 1 Score: 40.0 bits (92), Expect = 9.9e-04
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 28  NLVGEELEALSLKELHTLEKQLDKTLSRIRHRKVEGQERMQQNEE 73
           NLVGE+LE +S+KEL TLE+QL+  LS  R +K   Q  M+Q EE
Sbjct: 108 NLVGEDLEGMSIKELQTLERQLEGALSATRKQKT--QVMMEQMEE 150

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g05890 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g05890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014799.15.87e-1194.29MADS-box transcription factor 17, partial [Cucurbita argyrosperma subsp. argyros... [more]
KAG6576757.11.06e-1058.97MADS-box transcription factor 17, partial [Cucurbita argyrosperma subsp. sororia... [more]
XP_022922550.12.21e-1056.96MADS-box transcription factor 6-like [Cucurbita moschata][more]
XP_008439145.17.79e-0677.14PREDICTED: MADS-box transcription factor 17-like [Cucumis melo][more]
KAA0033595.11.41e-0578.79MADS-box transcription factor 17-like [Cucumis melo var. makuwa] >TYK22261.1 MAD... [more]
BLAST of Cp4.1LG14g05890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E9351.07e-1056.96MADS-box transcription factor 6-like OS=Cucurbita moschata OX=3662 GN=LOC1114305... [more]
A0A1S3AY433.77e-0677.14MADS-box transcription factor 17-like OS=Cucumis melo OX=3656 GN=LOC103484028 PE... [more]
A0A5D3DF026.82e-0678.79MADS-box transcription factor 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6J1CJS19.26e-0674.29MADS-box transcription factor 6-like OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A067JEN41.45e-0466.67Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26182 PE=4 SV=1[more]
BLAST of Cp4.1LG14g05890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G61120.19.9e-0455.56AGAMOUS-like 13 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 28..63
e-value: 3.4E-10
score: 40.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g05890.1Cp4.1LG14g05890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding