Cp4.1LG14g05780 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g05780
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	NADPH-dependent aldehyde reductase 1, chloroplastic-like
Location	Cp4.1LG14: 832875 .. 833159 (+)
RNA-Seq Expression	Cp4.1LG14g05780
Synteny	Cp4.1LG14g05780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCTCGGCTCTGTTCCTACTCCATTGGAGCTTCTTCTTCTGGTTTCTTCTTCGGTGGTTGTCGCAGTGCTGAGTTTAGAAATAGTTTCATTCCGCGCAGTTGGGCCATCGGCGGTGTTGGGTTAGTGACAAACATGGCATCTGAAGGCCGCCGACAGTTTCCTCCACAGAAGCAACAAGCTCAGCCTGGCAAAGAGCACGTCATGGACCCAACTCCACAGTTTACCAGCCCAGATTACAGGCCTGCCAATAAGCTTCAGGCACCTTTCTTTTCAATCTAA

mRNA sequence

ATGCTTTCTCGGCTCTGTTCCTACTCCATTGGAGCTTCTTCTTCTGGTTTCTTCTTCGGTGGTTGTCGCAGTGCTGAGTTTAGAAATAGTTTCATTCCGCGCAGTTGGGCCATCGGCGGTGTTGGGTTAGTGACAAACATGGCATCTGAAGGCCGCCGACAGTTTCCTCCACAGAAGCAACAAGCTCAGCCTGGCAAAGAGCACGTCATGGACCCAACTCCACAGTTTACCAGCCCAGATTACAGGCCTGCCAATAAGCTTCAGGCACCTTTCTTTTCAATCTAA

Coding sequence (CDS)

ATGCTTTCTCGGCTCTGTTCCTACTCCATTGGAGCTTCTTCTTCTGGTTTCTTCTTCGGTGGTTGTCGCAGTGCTGAGTTTAGAAATAGTTTCATTCCGCGCAGTTGGGCCATCGGCGGTGTTGGGTTAGTGACAAACATGGCATCTGAAGGCCGCCGACAGTTTCCTCCACAGAAGCAACAAGCTCAGCCTGGCAAAGAGCACGTCATGGACCCAACTCCACAGTTTACCAGCCCAGATTACAGGCCTGCCAATAAGCTTCAGGCACCTTTCTTTTCAATCTAA

Protein sequence

MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQAPFFSI

Homology

[Close]

BLAST of Cp4.1LG14g05780 vs. ExPASy Swiss-Prot
Match: Q5KTS5 (Glucose and ribitol dehydrogenase OS=Daucus carota OX=4039 GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-10
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 47 MASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          MAS G  QFPPQKQ++QPGKEH+MDP+PQ  SP Y+PANKLQ
Sbjct: 1  MASGG--QFPPQKQESQPGKEHLMDPSPQHASPHYKPANKLQ 40

[Close]

BLAST of Cp4.1LG14g05780 vs. ExPASy Swiss-Prot
Match: Q9MA93 (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-07
Identity = 22/33 (66.67%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 55 FPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKL 88
          FPPQKQ+ QPG +HVM+PTP+F+S +Y+P+NKL
Sbjct: 5  FPPQKQETQPGIQHVMEPTPEFSSSNYKPSNKL 37

[Close]

BLAST of Cp4.1LG14g05780 vs. ExPASy Swiss-Prot
Match: Q75KH3 (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0140800 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.3e-06
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 53 RQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          +QFPPQ Q+ QPGKEH MDP P+     Y+PANKL+
Sbjct: 4  QQFPPQNQETQPGKEHAMDPRPEAIIQSYKPANKLK 39

[Close]

BLAST of Cp4.1LG14g05780 vs. ExPASy Swiss-Prot
Match: Q9FZ42 (NADPH-dependent aldehyde reductase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ChlADR1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.3e-06
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 58 QKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          QKQ AQPGKEHVM+ +PQF+S DY+P+NKL+
Sbjct: 6  QKQHAQPGKEHVMESSPQFSSSDYQPSNKLR 36

[Close]

BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match: XP_023551832.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182 bits (463), Expect = 1.12e-54
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQ 60
          MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQ
Sbjct: 1  MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQ 60

Query: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 88
          QAQPGKEHVMDPTPQFTSPDYRPANKLQ
Sbjct: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 88

[Close]

BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match: KAG6576790.1 (Glucose and ribitol dehydrogenase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162 bits (411), Expect = 1.99e-48
Identity = 83/88 (94.32%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQ 60
          MLSRLCSYSIGASSS FF GGCRSAEFRNSFIPRSW IGGVGLV NMASEGR QFPPQKQ
Sbjct: 1  MLSRLCSYSIGASSSAFF-GGCRSAEFRNSFIPRSWDIGGVGLVRNMASEGR-QFPPQKQ 60

Query: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 88
          QAQPGKEHVMDPTPQFTSPDYRPANKLQ
Sbjct: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match: XP_022922637.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 165 bits (417), Expect = 8.60e-48
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQ 60
          MLSRLCSYSIGASSS FF GGCRSAEFRNSFIPRSWAIGGVGLV NMASEGR QFPPQKQ
Sbjct: 1  MLSRLCSYSIGASSSAFF-GGCRSAEFRNSFIPRSWAIGGVGLVRNMASEGR-QFPPQKQ 60

Query: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 88
          QAQPGKEHVMDPTPQFTSPDYRPANKLQ
Sbjct: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match: XP_022985493.1 (NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 157 bits (396), Expect = 1.20e-44
Identity = 81/88 (92.05%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQ 60
          ML RLCSYSIGASSS FF GG RS EFRNSFIPRSWAIGGVGLV NMASEGR QFPPQKQ
Sbjct: 1  MLCRLCSYSIGASSSAFF-GGFRSPEFRNSFIPRSWAIGGVGLVRNMASEGR-QFPPQKQ 60

Query: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 88
          QAQPGKEHVMDPTPQFTSPDYRPANKLQ
Sbjct: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cp4.1LG14g05780 vs. NCBI nr
Match: KAG7014818.1 (NADPH-dependent aldehyde reductase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120 bits (302), Expect = 7.82e-31
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQ 60
          MLSRLCSYSIGASSS FF GGCRSAEFRNSFIPRSW IGGVGLV NMASEGR QFPPQKQ
Sbjct: 1  MLSRLCSYSIGASSSAFF-GGCRSAEFRNSFIPRSWDIGGVGLVRNMASEGR-QFPPQKQ 60

Query: 61 QAQPGKEH 68
          QAQPGKEH
Sbjct: 61 QAQPGKEH 66

[Close]

BLAST of Cp4.1LG14g05780 vs. ExPASy TrEMBL
Match: A0A6J1E3V2 (NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430586 PE=4 SV=1)

HSP 1 Score: 165 bits (417), Expect = 4.17e-48
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQ 60
          MLSRLCSYSIGASSS FF GGCRSAEFRNSFIPRSWAIGGVGLV NMASEGR QFPPQKQ
Sbjct: 1  MLSRLCSYSIGASSSAFF-GGCRSAEFRNSFIPRSWAIGGVGLVRNMASEGR-QFPPQKQ 60

Query: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 88
          QAQPGKEHVMDPTPQFTSPDYRPANKLQ
Sbjct: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cp4.1LG14g05780 vs. ExPASy TrEMBL
Match: A0A6J1JDR9 (NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483486 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 5.83e-45
Identity = 81/88 (92.05%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQ 60
          ML RLCSYSIGASSS FF GG RS EFRNSFIPRSWAIGGVGLV NMASEGR QFPPQKQ
Sbjct: 1  MLCRLCSYSIGASSSAFF-GGFRSPEFRNSFIPRSWAIGGVGLVRNMASEGR-QFPPQKQ 60

Query: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 88
          QAQPGKEHVMDPTPQFTSPDYRPANKLQ
Sbjct: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 86

[Close]

BLAST of Cp4.1LG14g05780 vs. ExPASy TrEMBL
Match: A0A6J1CI89 (NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011421 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.60e-19
Identity = 56/88 (63.64%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 1  MLSRLCSYSIGASSSGFFFGGCRSAEFRNSFIPRSWAIGGVGLVTNMASEGRRQFPPQKQ 60
          M SR CSYS   S S    G  R    R++ IP   +   V LV NMASE R+ FPPQKQ
Sbjct: 1  MFSRFCSYST-RSPSYSLVGVFRQ---RSTKIPVRLS---VFLVRNMASE-RKNFPPQKQ 60

Query: 61 QAQPGKEHVMDPTPQFTSPDYRPANKLQ 88
          QAQPGKEHVMDPTPQFTSPDY+PANKLQ
Sbjct: 61 QAQPGKEHVMDPTPQFTSPDYKPANKLQ 80

[Close]

BLAST of Cp4.1LG14g05780 vs. ExPASy TrEMBL
Match: A0A1S3AYK5 (glucose and ribitol dehydrogenase homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103483994 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.50e-19
Identity = 53/100 (53.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 1  MLSRLCSYS----------IGASSSGFFFGGCRSAEFRNSFIP--RSWAIGGVGLVTNMA 60
          ++SR CSY           +     G  F GC      NS I   R W       V +MA
Sbjct: 4  LISRFCSYPNIRPLVIPCCLLGGFCGADFTGCSCRSNTNSSIVSRRCW-------VRSMA 63

Query: 61 SEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 88
          SEG++QFPPQKQQAQPGKEH MDPTPQFTSPDY PANKLQ
Sbjct: 64 SEGQQQFPPQKQQAQPGKEHAMDPTPQFTSPDYNPANKLQ 96

[Close]

BLAST of Cp4.1LG14g05780 vs. ExPASy TrEMBL
Match: A0A0A0L9H4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176290 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.71e-17
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 47 MASEGRRQFPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKLQAPFFSI 94
          MASEG+++FPPQKQQAQPGK+H MDPTPQFTSPDY PANKLQA  FS 
Sbjct: 1  MASEGQQKFPPQKQQAQPGKQHAMDPTPQFTSPDYNPANKLQALNFSF 48

[Close]

BLAST of Cp4.1LG14g05780 vs. TAIR 10
Match: AT3G05260.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-08
Identity = 22/33 (66.67%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 55 FPPQKQQAQPGKEHVMDPTPQFTSPDYRPANKL 88
          FPPQKQ+ QPG +HVM+PTP+F+S +Y+P+NKL
Sbjct: 5  FPPQKQETQPGIQHVMEPTPEFSSSNYKPSNKL 37

[Close]

BLAST of Cp4.1LG14g05780 vs. TAIR 10
Match: AT1G54870.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 5.2e-07
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 58 QKQQAQPGKEHVMDPTPQFTSPDYRPANKLQ 89
          QKQ AQPGKEHVM+ +PQF+S DY+P+NKL+
Sbjct: 53 QKQHAQPGKEHVMESSPQFSSSDYQPSNKLR 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g05780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5KTS5	2.9e-10	73.81	Glucose and ribitol dehydrogenase OS=Daucus carota OX=4039 GN=CAISE5 PE=2 SV=1	[more]
Q9MA93	3.9e-07	66.67	Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q75KH3	3.3e-06	61.11	Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9FZ42	7.3e-06	70.97	NADPH-dependent aldehyde reductase 1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Cp4.1LG14g05780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551832.1	1.12e-54	100.00	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita pepo subsp. ...	[more]
KAG6576790.1	1.99e-48	94.32	Glucose and ribitol dehydrogenase, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022922637.1	8.60e-48	95.45	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022985493.1	1.20e-44	92.05	NADPH-dependent aldehyde reductase 1, chloroplastic-like [Cucurbita maxima]	[more]
KAG7014818.1	7.82e-31	92.65	NADPH-dependent aldehyde reductase 1, chloroplastic, partial [Cucurbita argyrosp...	[more]

BLAST of Cp4.1LG14g05780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E3V2	4.17e-48	95.45	NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Cucurbita moschata O...	[more]
A0A6J1JDR9	5.83e-45	92.05	NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Cucurbita maxima OX=...	[more]
A0A6J1CI89	4.60e-19	63.64	NADPH-dependent aldehyde reductase 1, chloroplastic-like OS=Momordica charantia ...	[more]
A0A1S3AYK5	5.50e-19	53.00	glucose and ribitol dehydrogenase homolog 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0L9H4	3.71e-17	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176290 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g05780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05260.1	2.8e-08	66.67	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G54870.1	5.2e-07	70.97	NAD(P)-binding Rossmann-fold superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..94
None	No IPR available	PANTHER	PTHR48107:SF1	GLUCOSE/RIBITOL DEHYDROGENASE-RELATED	coord: 25..88
None	No IPR available	PANTHER	PTHR48107	NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED	coord: 25..88
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..22 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g05780.1	Cp4.1LG14g05780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity