Cp4.1LG14g05340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g05340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	pre-mRNA-splicing factor CWC25 homolog
Location	Cp4.1LG14: 1056751 .. 1066441 (-)
RNA-Seq Expression	Cp4.1LG14g05340
Synteny	Cp4.1LG14g05340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGGTATCTTTCCATTTATTGTTATTTCCATTTATTACTATTTCCATATCCTTGTAATTTATTTGATTATAAATAAGATAACTTTCACACCATTTAGGTGTGGTGGATTAATCAAACATTCACGCTCCGGAATATAGAGAACGTGTGGAAGGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTCCGCAAGCAAATCCATGAGGAGAAGGAGCGCCAAGAGTTTCGTCTTCTCCAAGAACAGGCCGGCCTCGTTCCGTATGTTTTATCTTCTATATTGTTGTTAACAGTTTTAATTATGCATTTGATTCATAGTCTGTAAGTTTCAAATCGGATTCGATCTCTGAATAGATGAGGATTGGAAACGTTGCGTAGATTAGGGTTACCGCCAAGGCGATGGTTAGGGCTTAAGTAGTTCGATTGTTTTGAGGAATATTTAAATTTTGGACTATATGGCGTTCCAGGAAGCAGGAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACTACATCTACTGCTGCGGCTGCCACTGAACCATCTAGTTCCAAGGTACTGTTCCACTCGCTGTTAATTTGTGTGCTTCGGCTATCTCTTCGTGGTGCTCAATTATGACTTTTTTTTGTTGCTTTCTTGTGTTGTTTCTGCAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACTCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATCATTCGGCAGCGTGAGCAACAAGCTCTTGCCCGCGTAAAGAACAATCCTATTCAAATGGCTATGATTCGCAAGACTGTAAGTTCATTTTTTCCTTGATGTTTTTTCTTCTCCTTATATCGTTTTAACCCTATCAAGTTCTAGAACTTTTACTGTCCTAACATGGGCTTTGGAAATTATATTGAAATATCCTTTTTCCATTCATTATTCTCTTGAGAAGGTTTCTGAACTATGTCCATGGACACTTTGTGGTAGAGAAAGCTGGTGGCTTATCTTAATTCCAAGTTATCCTTTGAGTTGATGTAATGGATTTCTCTGCATTTCTCACCCTGTCGATAGGAACTAAAGATGAATCTATGATCAGAAAGTTCCTTTCGGTATATCTTCATGACTAGTCAATTGTGGCAAAAGTGGCAGCTTGTTGATAAGGAATCAACCCGAGAGAAAGCTTTGATACCAAATGATAAGGAATCATTACAAGGGAAGTAAGATTCGTATTACCTTGTTGATCGAATATCTCAAGGTAAGAATACTTGTTTGAGATTCGAATCACTCCACAAACAAGATCGATCATGTCTAACTTGAATGATTCTAAACATGCAATCTAAACTACATAGAATTGCAAGGAAACTTAGTCATTTGCTAAAGGAAAGCACAAATGCTCATTTTACTGCATTTGCTAAGTCTCCTTACAAATACAACACACATGGTTCTATATAACCTCAAAGGAAATATATATCTGATCTTGAGCCTAAAGCTCTTATACCAAATGATAAGGAATAAGAGATTTCCCTTGAGTTGATTCCTTATCACTTGTGTTAAACAATTCCCCCGACAAATAATGAACAGCCATATCAAGAATGTTCTGGTACAATAATTTTCATTCTTGTAATAGAATCTCTGTTTATCTCATGATCGTATTATCTGCAAGCTCTTTCCCTTGTTTGACTTGAAGAATAGATCTGAGGTGTTTTCTTCTTTAAAAAATATATTAGGTTGAAGTGGAAAAACACAAGGACAAGAATCCTGATGACAAAAGAGAACGGAAGAAGCATCGCCATAGTAAATCAAAACGTCGTAAAGCTTCTTCTCCAGAAAGAGATTATGATTCTGAAAGTGTCAGCCCTGAGATGCAGAGAAGGAACCATGATCGTGACAAGAGTTCAAAACATGATGTTCATTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATGTGAACGAGAGGGATCGTGATAGAGGCTCGAAATATGATCAGTCAGATCGAAAGACGCCCAAAAGCAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAGTTGAAAGAGAGACAGAGATTCTTATACTCACAATGAAAAGGACAGTACAAAAGTGGGGGAATCAAGAACTCGTGAACCGAATGCTTCTAAATCTCCTTACGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGGGCGTGCAGCCAGGCTGCGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGAGGATGATGCACTCGAAGCCGAACAAAATGCAGTGCCCTCGAGCCGAAATTTCTTAGACACTGCTCAGAAACGTATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTTGTTGGAGGACATACTATTCACAGGGTAAATCTGAGATTGAAGCCAACGCTTTTAGACGGTAATGCACATCACTTGTATACTTTGCTTGTGGTTATTGTTTAACATCATCCAATGTGATCCAAGTCATGTTGATCACATTCATATATGGTTTGTTTAAATTAAATTGCTGATTTTTTTTCTAATGATATACTGAAATTATGAACCTGAATCACATTGGATGTATACATCTCTCAATGAACGAAATTTGCCTAAGGAAAGTGGTCTTAATATGTATACTCTATAGTCAAAGTCTGTCTTGTTTGGGCAACTTTTGAAGATGCCCAATTAATGTATTCAATGTTCAGCTTATTATTGTACTCTTTAGCTTAGTTTTATTCAGGTAGTTTAATGGTCAGAATTTTATGCAATGTTTAGTTTTATTAAATTAATACGTTACTTTAATTTTTAAATTTAAAATTATCTCACTCATTTAATATTAATATTAATGATGTGCTGTAGTTTAGTGGTGAGAATTTCACGTTGTGGACATGGAGACCTGGGCTCGAATCCCAGCAGCCACAATTTTACTTCTTAATCTTAATCTTCATGCCATATTTGATTTTAGTTAATTTATTTTATAAATTTTAGCCACAATCTTACTTTTTAATCTTAATCTTCCTGCCATATTTGGTTTTATTACTTTATTTTATAAAATTTAAATTAATCTCTAGTTAATTTATTTTATAAATTTTAGCCACAATCTTACTTTTTAATCTTAATCTTCCTGCCATATTTGGTTTTAATTACTTTATTTTATAATTTTTAAATTAATCTTGCTTATTTAGTCTTCATATTAATTGTGTGGCTGTAGTTTAGTGGTGAGAATTCCACGTTGTGGTTGTGGAGACCTGGGCTCGAATCCCAGCAGCCACAATCTTACGTTTTAGTTACTTTATTTTATAAATTTTAAATTAATCTCGCTCACTTAATCCTAATATTAATGGTTTTAGTTACTTTATTTTATAAATTTTAAATTAATCTCGCTCACTTAATCCTAATATTAATTGTGGCTGTAGTTTAATGGTGAGAATTCCACGTTGTGGTTGTGGAGACCTGGGCTCAAATCCCAGTTGCCACAACAATAGTAGTAACATGGAGACCCCGGCAGGGCACACCCACAATGATTTCTAATGCACCATTATTCTACGCATTAAAATTTCACTACACTATACTCTTCTAACTCGATGGTAATTAGCATATTCACAAGAATAAAGATTTATATTTTCTTTATGGTATACGGATTCAATTCACAATGGTCCGTTTGATTATAGCATTCAAAAGCAACAAATTCTCATGATATCATGTTATGTCTATGTATTCTTTATCTTTTCTTAAAGAAAGTTCGATTTTCATAAAATATGATCTTCCATGTCAAACTTTTAGCCTTCTCTTCTCGGTCAAGACCAAGCTTCAACATGGTATTTACCAGCCTTCTCCAACGCCCTTAGCCACCTTACAGCAGATTCCCGTGGAACCCGAGTTTCTTTCGATATAATTTCCTCGAAAGTTGACCATACATCTGCAGGCATTTTTGTGGAAGAGCCTGCAACATATACAGCAGCACCATCCTTGAGCATGTTCCAAATCCTTTGACTCTGTTCAAGCATCTTATGTTGCACGTAAACCTTCCGCGGTTGATCTCTGGAAAACGCGACATAAAAGCCTCCACCTTTCTCCTCTGATAGTACTCCGTGATGTTTCAAATGCGATAACCAGAAATCTCGATATAGGAAGTCGTTGTCCTCATTTCGACAACCGAAGAAAAACAAAACTGGAGCAGTTGACATGGAGGGATTCTCCATGGACCTTTCCTCTACAAATCCTCTGAAGGGTGCACAACCTGTTCCGGGTCCAACGAGAATCAAAGGAAGAGATGGGGATGGAGCGGGAAGCGAACCCTTATGGAACCACACCGGAATACGAACGCCTGTATCAAACATATCCATATATACATCAAGTAAATCAAATTCAGTGCTATGTAAATAACGAATGCCGAATTCTATTCTACGTACATTGTTCGGCATCAAGTCCAGCAAGCCAACTCGAGCAAAGACCCACCCGATTCCTTTTATATGGTGTCGTCCAAGATACTACGTTTACGGTTAAGTGCACCTGATTCGGGTGAGCTAAAGGGGAAGAAGATATGGAGAATGATCTTGTTTTCAATGGAGGAACCAACTGAACCAACCAATCAAATGGCATTTTCACAGAAGGGAAATCTTCTAATACCTGTAGTATTACCAAGACAAGTAAATGGGATAATTTCATCTTCTAGCTCTCTATTGGGTATTATATCTTAAGCTAAAAGAAAAATGTAGCACAAATATTTGGGGCAGCATGCATTTACTTAAATGTTTGGAATCACCTCAAGAACACTTCTTCGTTCCTTTTGATTGTACTGATATAAATCATCTCTTCCTTCAGGTGACGCAAAATATTGAAGTCTTTCCTTTTCATGTGGAGCTGTTGCATAGTAACTCATAACCTGCGAGAAAAATTATGTTTGGGAATATAAATGAATAAATAAAACAGAAGCAAGGTTGTAATTTCATCTGAACACCCTGAAAATAAAATGAGAGTAATGAAAAAATGAAGAGGTTCGAAGGACTTGCCTCGAAAAAATAGCGTCGAGGAGAAGCTGATGCAATATCCATTGTCAGTTCAATAAAAGTTTTCAATTTGATAGGAACCATTTGGGTAGCAGTTGGGATGGGATCCTGTTTGCGCCTATTTCTAGGAGAAATCTGAAATTAGAAGTGCTATTTGGTAAGTAGAAGATTTAATACAGCAACCTTCATATAATGATAAAGATTAATGTCGACAGAGTAGGCCTCATAGAAACGTAAACTTTCTTTGTTTATTGCACACATCGGTTGGGGAGGAGAGCGAAACATTCTTTATAAGGGTGTAAAAACCTCTCCCTTGCAAACGCGTTTTAAAAACCTTGAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAACCAGATACCGTGCGATGTGCCAGCGAGGAGGCTGAGCCCTGAAGGGGGGTGGACACGAGACAGTGTGCCATCAAGGATGCTGGGCCTTGAAGGTGGTAGATTGGGGGGTCCCACATCGATTGGAGAAGGGAACGAGTGCCAGCGAAGACGCTGGGCACCGAAGGGAGGTGGATTGTAAGATCCCACATCGGTTGGGGAGGATAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTATCTAGCAGACGCGTTTTAAAAACCTCGAGGGGAAGCCCAAAAGGGAAAGCCCAAAGAAGACAATATCTACTAGCGGTGGGCTTGGGTTTGAAAAAGATAACAGCTACAGATAAAACCGCAGTACAATGTGCTAACATCAAACACAATGAAAATATGAAACACTTGGCCCCTTAGCATTGTGTGATGTACTTGTGATAAAAAAACAACCAACCACTACCTATTTTCTAGCACAAGTACATCACAAACAATGAAAATAGAATCTTTGAGTATTTCCCAAAAAAAAAAAATTGAAATAAGATGATTCAAGAATTTACAAACTGATAAATCAAACTTACCGTAATAAATGATTCAGGGTCCAAATTGCAACGTTGTATGAAATCATTTACAGCAGCAGGGTTCTGACTGGGAAGAACCTCGAGGACATCACCAACTTCATATTCTATTACCTAAAATTAGTTCAAAATGCAATCACTGAGTTACATAGAAAAAAACAATGAAAAATAAGTAATGAAAATTTGGAAATTACCAACTTACAGAAGAAACAAATTCAAATTCAAAGTGGCGCACGTCCTTTCCAGAGCCTACTTTACTCAAACGCTCATTTTTTATCTACATGAAAAAAGAAAAATGAGAATTTAGAATATGAAAAGGAAATATTGCGAACAGCTCTCAAGATAAAAATGAAATTTCTATTCCAAAGAACTGAGACAAAGAAAGTACGAGATGTAACATTCTTTGGTTGGAGAGGCGAACGAAACATTTCTTATAAGGGTATGGAAACCTCTCCCTAGGAGAGGCATTTTAAAATCCTTGAGAGGAAGCCTGAAAGGGAAAGCCCAAAAAGGACAGTATCTGCTAGCGGTGAGCTTGGGCTGTTACAAATGGTATCAGAGTTAGACACCAGGCGATATGCCAGCGCCCCAAGGGTGTGGATTGTGAAATTCCACATCGGTTGGAGAGGCGAACGAAACATTTCTTATAAGGATGTGGAAACGTCTCCCTAGGAGACGCAGTTTAAGAACTTTGAGGGGAAGCTCAAAAGGAAAAATCCAAAGAGGAGAATATCTACTAGCAATGGGCTTGGACTTGCTGTTACATGTCTTCCCTAGCCTTCCAAGGAAGATGACCCGTATACCACTTTGTAAGGTTTCTCCTGCTGATTGTTCCAAAAGCACAATACACATAACCACCAATTTAAGAAGGGGTCTAATCCTCCTTACAACCATAGCTCCTAAGCTAATGACACAAAACATAACGTAACACAACATCAGACATCATATAACTAAATCCTAAACTCTAAAATCAAACATCACAAAATATATTTATACTTCCATACAACATTTAGAGACTAATGGCATAGCGAATTCCTTCTCTGCCCTTCATAACATAATATAAGTATTTACTATTGGGGTCTCACATTATGTACTTTACATTTTTTGTTTTCTTTGTCTAAGTGGTTGCCTTGTGAGAACCATTGAGGAGTACGCAAACTGAGCCAAATACTCCTAAATATAAAAGTTATGTTCAGTAAGATACTCACATGCATGATACTACAAAGCTAGCAAACTATATCTCAAATTCCCAATTCTGTTCAATTAATCAATCACACCACAAGACATGCCAAGTTTTTCCTCATCAAGAATTTTGTGGGTTTTGCAAAGAAGTTCAGACAATGCGAATTATGTTATCAGGAAGCTATCGACAATCACCTCGATAGGGGAAATGAAAAACTGGTTCACAAGGGTTCAAACCTGAATTCAGCTTCCATCCCATGATACCCATTGCTCTTGTATCACAACCATATACAAGAAAATCTATATATATATTGACTGATGTCAGAATTTGAGGTGAAATAATATGATCGATTAGCGAAGGTTTAATACCATATTAAGAAGGCAATCAGGTTTTTTCTTTCCATGAGAAAATTTTCCTGGAGACATCAAGCGAGCCCTCTCAATTTGCATCTCCATGTTCTTCAAATCTAAGAGACACAAGGAATATCAAGTGGTCAATAAATTGTATGAAGGCTACTAAAAGATAAATTAGTATCACATTAATTGTATAAACAATTAGAAGAATATCATTTACAGAATAAAAAGAAAAAATACACTTCTGTTCCCCAAGGTTTGATTTATATTGCATTTGGGTTTAAAGGCTTCAAATACCATTTTTGCTCCTCGTCGTCAACTTGACGTTAATTGATTGAAAGTTGACAACAAAAACCAAGAATGCTAACAACAAAACCCCAAAAAGAGATTATTCCAAATTTAAAAGGTTGAAATGTCGAGTTTGAAACCTATGAGATCCCATATTGGTTAGAGAGAGGAACGAAGCATTCCTTATAAGGATGTGGAAGCCTCTCCCTAGCAGACACATTTTAGAACTTTGAGGGGAAGCTCAGAAAGGAAAGCCCAAAGAGGACAATATTGACTAGCAGTGGGCTTGGGCTGTACAAATGGTATCAGAGCCAAGTTCCAGGCGGTGTGCTAACGAGGAGCTGGGACCTTAAGGGGGTGGATTGTGAGATCCCACATTGGTTAGAGAGGGGAACGAAACATTCTTTATGAGGGTGTGGAAACCCCTCCCTAGCAGACGCGTTTTAAAACCTAGAGGGGAAGCCCGGAAGGGAAAACCCAAAGAGAACAATATCTGCTAGCGGTGGGCTTGAGTTATTACAAAACCTCACGAACCCAAATATAATCTAAATCAAGTCTTAGGGACCAAAAGTGTATTTTATCTCAAAATAAACTAGAAACACAAGTAGATGCTGAACTGATCAAATATCAGTAGATTTTTGTTAGTGTAAACAAAGTCCAGAACCTATAGCCATCTTTTTACCCACTATTTGTTCGCTTAGTGAAATCTAAATCTGCCATTAAAGCCAACATCTGAATTCTCCATTTTTTACATGGTATGTTAACTGAACCAGGACAGAGGACCAGAAGTAGAAAATTCATCTTCATCAATTGTTATTCCATTGCATTACGCGTTTTGGATAAAAAAATCAAACTTTCATTAACAAAAATGAAAGGATACAATTGTCGTTTTATTGCACTCTTCATTATGAATATTCAAGAAACTAGCGTACCTGAGGTTAATTGTGAATTCAACTTCCCCACATTGTGATATGCAACTTGAATGCTTGATTGATCAATTAATGTGTCGCTCGAAAACATAAAATCAATGCCTTTCGGGAAAAACATTGGATTAGTATCACTCAACGAGCTCCACAATGATAACATCCAAGGATCTAGAGCAGCTTCATACCTGGCATAGAGCATTGATCTTTCAGATCAATTAACTTTCTATCGTTGAAAAATGCTAGCACAGAAAGACATAGAAAACATTCAAGTAACTACAGTTGTAAATGTATTCACTAACAAAATAAAACCAATCCCTAATGAAACTTCCTATCGGTTTGAAGATCATGGCTGGATTTACTTGAGGGGAAGGTAGATCAGACGGAAAGACACGGAAATAGCTTTTTCTAAGAATCATTCAACTAAATTAGTAGATTAAAGGAAGCCTACCCCGAATGGTGTTGATCATCACCTAAGCCTCTTTCCAGAATGGCCCTTGCTCCCAAATCAGAAAGTCTTTTGTCAAGCTTTTTTGCAACAAACTGTAGCGTACATTAGCAGGTACCTTAACATATCATACCTCAAAATTACAAGCCAATCAATTTCTAATCATAAAATTCTGGACTAGCACGTCTGAGATGCGTGAATGAAATAAACTTCGTAGTGTAGAAAAAAAAATGGGGAATGCATGAATTAATTTTACTTCCAAAGAAAAGGAGAAGAGATATTACATTATATTTTTGATAACTAGAATCACCTAATCCAAATACAGCATAAGGTACTCCTTTGAGCCAAGAATGATTTAAACTTCTTTGCAGAAGGAACCTCCAAAATCCCTGA

mRNA sequence

ATAGGTATCTTTCCATTTATTGTTATTTCCATTTATTACTATTTCCATATCCTTGTAATTTATTTGATTATAAATAAGATAACTTTCACACCATTTAGGTGTGGTGGATTAATCAAACATTCACGCTCCGGAATATAGAGAACGTGTGGAAGGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTCCGCAAGCAAATCCATGAGGAGAAGGAGCGCCAAGAGTTTCGTCTTCTCCAAGAACAGGCCGGCCTCGTTCCGAAGCAGGAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACTACATCTACTGCTGCGGCTGCCACTGAACCATCTAGTTCCAAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACTCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATCATTCGGCAGCGTGAGCAACAAGCTCTTGCCCGCGTAAAGAACAATCCTATTCAAATGGCTATGATTCGCAAGACTGTTGAAGTGGAAAAACACAAGGACAAGAATCCTGATGACAAAAGAGAACGGAAGAAGCATCGCCATAGTAAATCAAAACGTCGTAAAGCTTCTTCTCCAGAAAGAGATTATGATTCTGAAAGTGTCAGCCCTGAGATGCAGAGAAGGAACCATGATCGTGACAAGAGTTCAAAACATGATGTTCATTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATGTGAACGAGAGGGATCGTGATAGAGGCTCGAAATATGATCAGTCAGATCGAAAGACGCCCAAAAGCAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAACAGAGATTCTTATACTCACAATGAAAAGGACAGTACAAAAGTGGGGGAATCAAGAACTCGTGAACCGAATGCTTCTAAATCTCCTTACGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGGGCGTGCAGCCAGGCTGCGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGAGGATGATGCACTCGAAGCCGAACAAAATGCAGTGCCCTCGAGCCGAAATTTCTTAGACACTGCTCAGAAACGTATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTTGTTGGAGGACATACTATTCACAGGGTAAATCTGAGATTGAAGCCAACGCTTTTAGACGAAGGAACCTCCAAAATCCCTGA

Coding sequence (CDS)

ATGGCTATGATTCGCAAGACTGTTGAAGTGGAAAAACACAAGGACAAGAATCCTGATGACAAAAGAGAACGGAAGAAGCATCGCCATAGTAAATCAAAACGTCGTAAAGCTTCTTCTCCAGAAAGAGATTATGATTCTGAAAGTGTCAGCCCTGAGATGCAGAGAAGGAACCATGATCGTGACAAGAGTTCAAAACATGATGTTCATTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATGTGAACGAGAGGGATCGTGATAGAGGCTCGAAATATGATCAGTCAGATCGAAAGACGCCCAAAAGCAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAACAGAGATTCTTATACTCACAATGAAAAGGACAGTACAAAAGTGGGGGAATCAAGAACTCGTGAACCGAATGCTTCTAAATCTCCTTACGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGGGCGTGCAGCCAGGCTGCGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGAGGATGATGCACTCGAAGCCGAACAAAATGCAGTGCCCTCGAGCCGAAATTTCTTAGACACTGCTCAGAAACGTATGTATGGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTTGTTGGAGGACATACTATTCACAGGGTAAATCTGAGATTGAAGCCAACGCTTTTAGACGAAGGAACCTCCAAAATCCCTGA

Protein sequence

MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDRDKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERHHDNRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICWRTYYSQGKSEIEANAFRRRNLQNP

Homology

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BLAST of Cp4.1LG14g05340 vs. NCBI nr
Match: XP_023551879.1 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 462 bits (1190), Expect = 6.32e-161
Identity = 250/255 (98.04%), Postives = 251/255 (98.43%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR
Sbjct: 164 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 223

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERHHDN--- 120
           DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERHHD+   
Sbjct: 224 DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERHHDSXKR 283

Query: 121 -RDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQDAE 180
            RDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQDAE
Sbjct: 284 DRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQDAE 343

Query: 181 FHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICWRTY 240
           FHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICWRTY
Sbjct: 344 FHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICWRTY 403

Query: 241 YSQGKSEIEANAFRR 251
           YSQGKSEIEANAFRR
Sbjct: 404 YSQGKSEIEANAFRR 418

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BLAST of Cp4.1LG14g05340 vs. NCBI nr
Match: XP_022922575.1 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita moschata])

HSP 1 Score: 399 bits (1024), Expect = 9.82e-136
Identity = 226/258 (87.60%), Postives = 233/258 (90.31%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRR---N 60
           MAMIRKTVEVEKHK KNPDD+ ERKKH HSKSKRRK S P R+YDSES SPE QRR   N
Sbjct: 159 MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 218

Query: 61  HDRDKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERHHDN 120
           HDRDKSSK DV SYSEDRRSKTDY+NERDRD GSKYDQSDRKTPKSNPHDYYAEERHHD+
Sbjct: 219 HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPHDYYAEERHHDS 278

Query: 121 ----RDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQ 180
               RDSYTHNEKDS +VGESRT EPNAS +P+EPRHKHRRPATKLSEE RAARLREMQQ
Sbjct: 279 SKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLREMQQ 338

Query: 181 DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICW 240
           DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMY AEKGGSSTIEESI  
Sbjct: 339 DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEESIRR 398

Query: 241 RTYYSQGKSEIEANAFRR 251
           RTYYSQGKSEIEANAFRR
Sbjct: 399 RTYYSQGKSEIEANAFRR 416

[Close]

BLAST of Cp4.1LG14g05340 vs. NCBI nr
Match: XP_022984402.1 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita maxima])

HSP 1 Score: 394 bits (1011), Expect = 3.68e-133
Identity = 225/268 (83.96%), Postives = 232/268 (86.57%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHD- 60
           MAMIRKTVE EKHKDKNPDDKRER KHRHSKSKRRK SSPER+YDSES SPE QRRNHD 
Sbjct: 158 MAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKDSSPEREYDSESASPERQRRNHDS 217

Query: 61  -------------RDKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPH 120
                        RDKSSK DV SYSEDRRSKTDY+NERDRDRGSK+DQSDRKTPK NPH
Sbjct: 218 ESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMNERDRDRGSKFDQSDRKTPKRNPH 277

Query: 121 DYYAEERHHDN----RDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEE 180
           DYYAEERHHD+    RDSYT NEKDS +VGESRT EPNASK+P+EPRHKHRRPATKLSEE
Sbjct: 278 DYYAEERHHDSSKRDRDSYTRNEKDSRRVGESRTYEPNASKTPFEPRHKHRRPATKLSEE 337

Query: 181 GRAARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKG 240
            RAARL EMQQDAEFHEEQRWRRLKKAA DDALEAEQNAVPSSRNFLDTAQKRMYGAEKG
Sbjct: 338 ERAARLSEMQQDAEFHEEQRWRRLKKAAVDDALEAEQNAVPSSRNFLDTAQKRMYGAEKG 397

Query: 241 GSSTIEESICWRTYYSQGKSEIEANAFR 250
           GSSTIEESI  R Y SQGKSEIEANAFR
Sbjct: 398 GSSTIEESIRRRAYCSQGKSEIEANAFR 425

[Close]

BLAST of Cp4.1LG14g05340 vs. NCBI nr
Match: XP_008453851.1 (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo] >KAA0044681.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK16902.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 354 bits (908), Expect = 4.26e-118
Identity = 208/263 (79.09%), Postives = 222/263 (84.41%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKR K SSPERDYDSE  SPE QRR HD 
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDASPERQRRKHDH 217

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKY------DQSDRKTPKSNPHDYYAEERH 120
           DKSS+HD HS+SEDRRSK D  NERDRDRGSKY      DQSDRKT KSNP D  A+ RH
Sbjct: 218 DKSSRHDGHSHSEDRRSKADSKNERDRDRGSKYAARTSYDQSDRKTSKSNPRDSAAD-RH 277

Query: 121 HD------NRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARL 180
           HD      +RDS+ +N+KDS +VGE R  E +AS++P E RH+HRRP TKLSEE RAARL
Sbjct: 278 HDRSKRDRDRDSHANNDKDSRRVGEPRYYESHASETPNESRHRHRRPTTKLSEEERAARL 337

Query: 181 REMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIE 240
           REMQQDAE HEEQRW+RLKKAAEDDALEA+QNAVPSSRNFLDTAQKRMYGAEKGGSSTIE
Sbjct: 338 REMQQDAELHEEQRWKRLKKAAEDDALEAKQNAVPSSRNFLDTAQKRMYGAEKGGSSTIE 397

Query: 241 ESICWRTYYSQGKSEIEANAFRR 251
           ESI  RTYYSQGKSEIEANAFRR
Sbjct: 398 ESIRRRTYYSQGKSEIEANAFRR 419

[Close]

BLAST of Cp4.1LG14g05340 vs. NCBI nr
Match: XP_004146897.1 (pre-mRNA-splicing factor CWC25 homolog [Cucumis sativus] >KGN53175.1 hypothetical protein Csa_014942 [Cucumis sativus])

HSP 1 Score: 343 bits (881), Expect = 4.92e-114
Identity = 204/261 (78.16%), Postives = 220/261 (84.29%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKR K SSPERDYDSE VSPE QRR HD 
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDVSPERQRRKHDH 217

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKY------DQSDRKTPKSNPHDYYAEERH 120
           DKSS+HD HS+SEDRRSK +  NERDRDRGSKY      DQSDRKT KSNPHD  A+ R+
Sbjct: 218 DKSSRHDGHSHSEDRRSKAETKNERDRDRGSKYAARTSYDQSDRKTFKSNPHDSAAD-RY 277

Query: 121 HD----NRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLRE 180
           HD    +RDSY  N++DS +VGE R  E NAS++P E RH+HRRP TKLSEE RAARLRE
Sbjct: 278 HDRSKRDRDSYATNDRDSRRVGELRYYESNASETPNESRHRHRRPTTKLSEEERAARLRE 337

Query: 181 MQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEES 240
           MQQDAE HEEQR++RLKKA EDDALEA+QNAVPSSRNFLD AQKRMY AEKGGSSTIEES
Sbjct: 338 MQQDAELHEEQRFKRLKKADEDDALEAKQNAVPSSRNFLDMAQKRMYSAEKGGSSTIEES 397

Query: 241 ICWRTYYSQGKSEIEANAFRR 251
           I  RTYYSQGKS+IEANAFRR
Sbjct: 398 IRRRTYYSQGKSQIEANAFRR 417

[Close]

BLAST of Cp4.1LG14g05340 vs. ExPASy TrEMBL
Match: A0A6J1E963 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog OS=Cucurbita moschata OX=3662 GN=LOC111430542 PE=3 SV=1)

HSP 1 Score: 399 bits (1024), Expect = 4.75e-136
Identity = 226/258 (87.60%), Postives = 233/258 (90.31%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRR---N 60
           MAMIRKTVEVEKHK KNPDD+ ERKKH HSKSKRRK S P R+YDSES SPE QRR   N
Sbjct: 159 MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 218

Query: 61  HDRDKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERHHDN 120
           HDRDKSSK DV SYSEDRRSKTDY+NERDRD GSKYDQSDRKTPKSNPHDYYAEERHHD+
Sbjct: 219 HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPHDYYAEERHHDS 278

Query: 121 ----RDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQ 180
               RDSYTHNEKDS +VGESRT EPNAS +P+EPRHKHRRPATKLSEE RAARLREMQQ
Sbjct: 279 SKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLREMQQ 338

Query: 181 DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICW 240
           DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMY AEKGGSSTIEESI  
Sbjct: 339 DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEESIRR 398

Query: 241 RTYYSQGKSEIEANAFRR 251
           RTYYSQGKSEIEANAFRR
Sbjct: 399 RTYYSQGKSEIEANAFRR 416

[Close]

BLAST of Cp4.1LG14g05340 vs. ExPASy TrEMBL
Match: A0A6J1J231 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482710 PE=3 SV=1)

HSP 1 Score: 394 bits (1011), Expect = 1.78e-133
Identity = 225/268 (83.96%), Postives = 232/268 (86.57%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHD- 60
           MAMIRKTVE EKHKDKNPDDKRER KHRHSKSKRRK SSPER+YDSES SPE QRRNHD 
Sbjct: 158 MAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKDSSPEREYDSESASPERQRRNHDS 217

Query: 61  -------------RDKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPH 120
                        RDKSSK DV SYSEDRRSKTDY+NERDRDRGSK+DQSDRKTPK NPH
Sbjct: 218 ESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMNERDRDRGSKFDQSDRKTPKRNPH 277

Query: 121 DYYAEERHHDN----RDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEE 180
           DYYAEERHHD+    RDSYT NEKDS +VGESRT EPNASK+P+EPRHKHRRPATKLSEE
Sbjct: 278 DYYAEERHHDSSKRDRDSYTRNEKDSRRVGESRTYEPNASKTPFEPRHKHRRPATKLSEE 337

Query: 181 GRAARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKG 240
            RAARL EMQQDAEFHEEQRWRRLKKAA DDALEAEQNAVPSSRNFLDTAQKRMYGAEKG
Sbjct: 338 ERAARLSEMQQDAEFHEEQRWRRLKKAAVDDALEAEQNAVPSSRNFLDTAQKRMYGAEKG 397

Query: 241 GSSTIEESICWRTYYSQGKSEIEANAFR 250
           GSSTIEESI  R Y SQGKSEIEANAFR
Sbjct: 398 GSSTIEESIRRRAYCSQGKSEIEANAFR 425

[Close]

BLAST of Cp4.1LG14g05340 vs. ExPASy TrEMBL
Match: A0A5A7TSZ0 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00360 PE=3 SV=1)

HSP 1 Score: 354 bits (908), Expect = 2.06e-118
Identity = 208/263 (79.09%), Postives = 222/263 (84.41%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKR K SSPERDYDSE  SPE QRR HD 
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDASPERQRRKHDH 217

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKY------DQSDRKTPKSNPHDYYAEERH 120
           DKSS+HD HS+SEDRRSK D  NERDRDRGSKY      DQSDRKT KSNP D  A+ RH
Sbjct: 218 DKSSRHDGHSHSEDRRSKADSKNERDRDRGSKYAARTSYDQSDRKTSKSNPRDSAAD-RH 277

Query: 121 HD------NRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARL 180
           HD      +RDS+ +N+KDS +VGE R  E +AS++P E RH+HRRP TKLSEE RAARL
Sbjct: 278 HDRSKRDRDRDSHANNDKDSRRVGEPRYYESHASETPNESRHRHRRPTTKLSEEERAARL 337

Query: 181 REMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIE 240
           REMQQDAE HEEQRW+RLKKAAEDDALEA+QNAVPSSRNFLDTAQKRMYGAEKGGSSTIE
Sbjct: 338 REMQQDAELHEEQRWKRLKKAAEDDALEAKQNAVPSSRNFLDTAQKRMYGAEKGGSSTIE 397

Query: 241 ESICWRTYYSQGKSEIEANAFRR 251
           ESI  RTYYSQGKSEIEANAFRR
Sbjct: 398 ESIRRRTYYSQGKSEIEANAFRR 419

[Close]

BLAST of Cp4.1LG14g05340 vs. ExPASy TrEMBL
Match: A0A1S3BY15 (pre-mRNA-splicing factor CWC25 homolog OS=Cucumis melo OX=3656 GN=LOC103494454 PE=3 SV=1)

HSP 1 Score: 354 bits (908), Expect = 2.06e-118
Identity = 208/263 (79.09%), Postives = 222/263 (84.41%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKR K SSPERDYDSE  SPE QRR HD 
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDASPERQRRKHDH 217

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKY------DQSDRKTPKSNPHDYYAEERH 120
           DKSS+HD HS+SEDRRSK D  NERDRDRGSKY      DQSDRKT KSNP D  A+ RH
Sbjct: 218 DKSSRHDGHSHSEDRRSKADSKNERDRDRGSKYAARTSYDQSDRKTSKSNPRDSAAD-RH 277

Query: 121 HD------NRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARL 180
           HD      +RDS+ +N+KDS +VGE R  E +AS++P E RH+HRRP TKLSEE RAARL
Sbjct: 278 HDRSKRDRDRDSHANNDKDSRRVGEPRYYESHASETPNESRHRHRRPTTKLSEEERAARL 337

Query: 181 REMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIE 240
           REMQQDAE HEEQRW+RLKKAAEDDALEA+QNAVPSSRNFLDTAQKRMYGAEKGGSSTIE
Sbjct: 338 REMQQDAELHEEQRWKRLKKAAEDDALEAKQNAVPSSRNFLDTAQKRMYGAEKGGSSTIE 397

Query: 241 ESICWRTYYSQGKSEIEANAFRR 251
           ESI  RTYYSQGKSEIEANAFRR
Sbjct: 398 ESIRRRTYYSQGKSEIEANAFRR 419

[Close]

BLAST of Cp4.1LG14g05340 vs. ExPASy TrEMBL
Match: A0A0A0KU62 (Cir_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G025080 PE=3 SV=1)

HSP 1 Score: 343 bits (881), Expect = 2.38e-114
Identity = 204/261 (78.16%), Postives = 220/261 (84.29%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDR 60
           MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKR K SSPERDYDSE VSPE QRR HD 
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDVSPERQRRKHDH 217

Query: 61  DKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKY------DQSDRKTPKSNPHDYYAEERH 120
           DKSS+HD HS+SEDRRSK +  NERDRDRGSKY      DQSDRKT KSNPHD  A+ R+
Sbjct: 218 DKSSRHDGHSHSEDRRSKAETKNERDRDRGSKYAARTSYDQSDRKTFKSNPHDSAAD-RY 277

Query: 121 HD----NRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLRE 180
           HD    +RDSY  N++DS +VGE R  E NAS++P E RH+HRRP TKLSEE RAARLRE
Sbjct: 278 HDRSKRDRDSYATNDRDSRRVGELRYYESNASETPNESRHRHRRPTTKLSEEERAARLRE 337

Query: 181 MQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEES 240
           MQQDAE HEEQR++RLKKA EDDALEA+QNAVPSSRNFLD AQKRMY AEKGGSSTIEES
Sbjct: 338 MQQDAELHEEQRFKRLKKADEDDALEAKQNAVPSSRNFLDMAQKRMYSAEKGGSSTIEES 397

Query: 241 ICWRTYYSQGKSEIEANAFRR 251
           I  RTYYSQGKS+IEANAFRR
Sbjct: 398 IRRRTYYSQGKSQIEANAFRR 417

[Close]

BLAST of Cp4.1LG14g05340 vs. TAIR 10
Match: AT2G44200.1 (CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor )

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-24
Identity = 97/254 (38.19%), Postives = 136/254 (53.54%), Query Frame = 0


Query: 11  EKHKDKNP---DDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQRRNHDRDKSSK-- 70
           ++H +K     DD  +R++   +  +RR++   +     ES     +RR  D D  SK  
Sbjct: 247 DRHYEKRRSELDDGHKRRERHDTHYERRRSEMDDESKRRESRDNHYERRRSDLDDESKRR 306

Query: 71  --HDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDR-KTPKSNPHDYYAEER-----HHDN 130
             HD H   +      +Y     +D+  + D  D  K   + P++ Y           +N
Sbjct: 307 ESHDKHFERQRSDLDDEYKRRESQDKRRRSDIDDEPKRRDARPNEKYRNRSPKGGVEREN 366

Query: 131 RDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQDAEF 190
             SY   +K        R  E   S  P E +++ R+  +KLSEE RAARL++MQ DAE 
Sbjct: 367 LKSYGQEDK-------KRKAEDLDSGKPNEYQNRRRKGGSKLSEEERAARLKQMQMDAEV 426

Query: 191 HEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICWRTYY 250
           HEEQRW RLKKA E DA+EA++N V + ++FLD A K +YG EKGGSSTIEES+  R+YY
Sbjct: 427 HEEQRWTRLKKADETDAVEADKNKVSTGKSFLDDANKSVYGVEKGGSSTIEESVRRRSYY 486

Query: 251 SQGKSEIEANAFRR 252
           SQ  +  E NAFRR
Sbjct: 487 SQRGTAAEGNAFRR 493

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g05340 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g05340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551879.1	6.32e-161	98.04	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog, partial [Cucurbita ...	[more]
XP_022922575.1	9.82e-136	87.60	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita moschata]	[more]
XP_022984402.1	3.68e-133	83.96	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita maxima]	[more]
XP_008453851.1	4.26e-118	79.09	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo] >KAA0044681.1 p...	[more]
XP_004146897.1	4.92e-114	78.16	pre-mRNA-splicing factor CWC25 homolog [Cucumis sativus] >KGN53175.1 hypothetica...	[more]

BLAST of Cp4.1LG14g05340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E963	4.75e-136	87.60	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog OS=Cucurbita moschat...	[more]
A0A6J1J231	1.78e-133	83.96	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog OS=Cucurbita maxima ...	[more]
A0A5A7TSZ0	2.06e-118	79.09	Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BY15	2.06e-118	79.09	pre-mRNA-splicing factor CWC25 homolog OS=Cucumis melo OX=3656 GN=LOC103494454 P...	[more]
A0A0A0KU62	2.38e-114	78.16	Cir_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G025080 PE=3 ...	[more]

BLAST of Cp4.1LG14g05340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44200.1	2.0e-24	38.19	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 180..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..182
None	No IPR available	PANTHER	PTHR16196	CELL CYCLE CONTROL PROTEIN CWF25	coord: 1..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g05340.1	Cp4.1LG14g05340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005684	U2-type spliceosomal complex