Cp4.1LG14g05130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG14g05130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG14: 1136791 .. 1137006 (-)
RNA-Seq ExpressionCp4.1LG14g05130
SyntenyCp4.1LG14g05130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTCGTCCCTCTGCCGTTCTGACCGTCGTGCTGGTGGTGGTGCTGCTCGTTAGTGTCGCTTATGCGCACGAGGGGCACGTGCATCCTCCGTCCTCCAACCCCCATGTCGCTCCTCCACCTGAACACAACGCCGCCACCGCCGTGAACAGCCTTTCGTACTTTTGGTCTATGGCTATAGCCATGGTGGCTTCTTCTTGGATGCTGTTCTAA

mRNA sequence

ATGGCAGCTCGTCCCTCTGCCGTTCTGACCGTCGTGCTGGTGGTGGTGCTGCTCGTTAGTGTCGCTTATGCGCACGAGGGGCACGTGCATCCTCCGTCCTCCAACCCCCATGTCGCTCCTCCACCTGAACACAACGCCGCCACCGCCGTGAACAGCCTTTCGTACTTTTGGTCTATGGCTATAGCCATGGTGGCTTCTTCTTGGATGCTGTTCTAA

Coding sequence (CDS)

ATGGCAGCTCGTCCCTCTGCCGTTCTGACCGTCGTGCTGGTGGTGGTGCTGCTCGTTAGTGTCGCTTATGCGCACGAGGGGCACGTGCATCCTCCGTCCTCCAACCCCCATGTCGCTCCTCCACCTGAACACAACGCCGCCACCGCCGTGAACAGCCTTTCGTACTTTTGGTCTATGGCTATAGCCATGGTGGCTTCTTCTTGGATGCTGTTCTAA

Protein sequence

MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMAIAMVASSWMLF
Homology
BLAST of Cp4.1LG14g05130 vs. NCBI nr
Match: KAG6576850.1 (hypothetical protein SDJN03_24424, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (328), Expect = 5.29e-38
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0

Query: 1  MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMA 60
          MAARPSAVLTVVLV +LLVSVAYAHEGHVHPPSS+PHVAPPPEHNAATAVNSLSYFWSMA
Sbjct: 1  MAARPSAVLTVVLVALLLVSVAYAHEGHVHPPSSDPHVAPPPEHNAATAVNSLSYFWSMA 60

Query: 61 IAMVASSWMLF 71
          IAMVASSWMLF
Sbjct: 61 IAMVASSWMLF 71

BLAST of Cp4.1LG14g05130 vs. NCBI nr
Match: KAA0061157.1 (hypothetical protein E6C27_scaffold753G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 4.06e-24
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMA 60
          MAARPSAVL+V+LV +LL+SV  AHEGH HPPSS  HVAPPP+HNAA  VNSLSYFWSMA
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAHPPSSEHHVAPPPQHNAAI-VNSLSYFWSMA 60

Query: 61 IAMVASS 67
          +AMVA+S
Sbjct: 61 MAMVAAS 66

BLAST of Cp4.1LG14g05130 vs. NCBI nr
Match: KGN53725.1 (hypothetical protein Csa_014716 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 4.06e-24
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 1  MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMA 60
          MAA PSAVL+VVLV +LL+ VA AHEGH HPPSS  H+APPP+H+AA  +NSLSYFWSMA
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAI-INSLSYFWSMA 60

Query: 61 IAMVASSWML 70
          +AMVA+SW++
Sbjct: 61 MAMVAASWII 69

BLAST of Cp4.1LG14g05130 vs. NCBI nr
Match: TYK29918.1 (hypothetical protein E5676_scaffold652G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 1.16e-23
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMA 60
          MAARPSAVL+V+LV +LL+SV  AHEGH HPPSS  HVAPPP+HNAA  +NSLSYFWSMA
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAHPPSSEHHVAPPPQHNAAI-MNSLSYFWSMA 60

Query: 61 IAMVASS 67
          +AMVA+S
Sbjct: 61 MAMVAAS 66

BLAST of Cp4.1LG14g05130 vs. NCBI nr
Match: KAG7030901.1 (Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.2 bits (217), Expect = 2.83e-18
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 1   MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMA 60
           MAARPSAVL+ VL V+LLV VA  HEGHVHPPSS P  +PPP  NAA  +NS SY WSM 
Sbjct: 689 MAARPSAVLSFVLAVLLLVYVANGHEGHVHPPSSEPTASPPPGVNAAI-MNSFSYSWSMV 748

Query: 61  IAMVASSWMLF 71
           +AMVA+SWMLF
Sbjct: 749 MAMVATSWMLF 758

BLAST of Cp4.1LG14g05130 vs. ExPASy TrEMBL
Match: A0A5A7V2Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00260 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.96e-24
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMA 60
          MAARPSAVL+V+LV +LL+SV  AHEGH HPPSS  HVAPPP+HNAA  VNSLSYFWSMA
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAHPPSSEHHVAPPPQHNAAI-VNSLSYFWSMA 60

Query: 61 IAMVASS 67
          +AMVA+S
Sbjct: 61 MAMVAAS 66

BLAST of Cp4.1LG14g05130 vs. ExPASy TrEMBL
Match: A0A0A0KVS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111600 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.96e-24
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 1  MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMA 60
          MAA PSAVL+VVLV +LL+ VA AHEGH HPPSS  H+APPP+H+AA  +NSLSYFWSMA
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAI-INSLSYFWSMA 60

Query: 61 IAMVASSWML 70
          +AMVA+SW++
Sbjct: 61 MAMVAASWII 69

BLAST of Cp4.1LG14g05130 vs. ExPASy TrEMBL
Match: A0A5D3E2A2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold652G00020 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.63e-24
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MAARPSAVLTVVLVVVLLVSVAYAHEGHVHPPSSNPHVAPPPEHNAATAVNSLSYFWSMA 60
          MAARPSAVL+V+LV +LL+SV  AHEGH HPPSS  HVAPPP+HNAA  +NSLSYFWSMA
Sbjct: 1  MAARPSAVLSVLLVGLLLISVVNAHEGHAHPPSSEHHVAPPPQHNAAI-MNSLSYFWSMA 60

Query: 61 IAMVASS 67
          +AMVA+S
Sbjct: 61 MAMVAAS 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6576850.15.29e-3895.77hypothetical protein SDJN03_24424, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0061157.14.06e-2477.61hypothetical protein E6C27_scaffold753G00260 [Cucumis melo var. makuwa][more]
KGN53725.14.06e-2471.43hypothetical protein Csa_014716 [Cucumis sativus][more]
TYK29918.11.16e-2376.12hypothetical protein E5676_scaffold652G00020 [Cucumis melo var. makuwa][more]
KAG7030901.12.83e-1870.42Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Cucurbita ar... [more]
Match NameE-valueIdentityDescription
A0A5A7V2Q51.96e-2477.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KVS31.96e-2471.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111600 PE=4 SV=1[more]
A0A5D3E2A25.63e-2476.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g05130.1Cp4.1LG14g05130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane