Cp4.1LG14g05080 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g05080
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribonuclease T(2)
Location	Cp4.1LG14: 1166997 .. 1174321 (+)
RNA-Seq Expression	Cp4.1LG14g05080
Synteny	Cp4.1LG14g05080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAACATCACCTGTCTTTCCATTTTTTAAAAATGGCTTCTTTCTCCATTAAATCCAACCCAATGGTGGTGGCGCCGGCGGTGTTTCTTCTTGTTCTTCAACTGGTGGCGGTGGTACTCGCGGCGGAGACTCCAAGCGGCGGTGGACAGAGGGAATTTGACTATTTTGTGTTGGCTCTTCAATGGCCAGCTACTTCTTGCAAGAACACGGGCAAGTGTTGCCCGGCCAATGGTTGCTGCCGTGGGTGAGCTTTTGTCTCCGATATTAAGCTTGATCGAGCGTTGACTTTTGAAATTTGACNTGAGCTTTTGTCTCCGATATTAAGCTTGATCGAGCGTTGACTTCTGAAAGCTGACTTTTTTTGTGTTTTCTCTGTGTTTGAATATTTTGTTTGTCAACTGTCTAGAGCTGACTCTCCCACTGAATTTACAATCCGTAAGTGGAAAACTAAGCCCTCTAAGGTTTGGAATTTGGGTTGAATTTGGATGTTTTGTGTATTAAGATCTGAAAATTTTGTGTTTGAATGTGACAGATGGGTTATGGCCTCAGTATAATGAGAGAGGATGGCCATCTTGTTGCACTGATGCAGTCTTCAATCAAAATGAGGTCTCCAATGAGTATAACAAATGATTCTACGATTGTTTGCTATCTTAAACGGCCTAAGTCCACCGCTAGTAGATATTGTGCCCGTTACGTATTATTGTCGGCCTCATAATTTTAAAACGTGTTTACTAGGGAGAGGTTTTCACACCCTTATAAATAACGATTCATTCTCTTCTCCAACCGGGATCTCACAATCCATCTCTTTTGGGGGCCTAACGTCTTCGATGGTACACCGCTCGGTGTTTAGCTCTGATTCCATTTGTAACTGTTCAAACTCACCGCTAGCAGATATTGTTTTCTTTGGACTTTTTCATTTAGGCTTCCGTTCAAGATTTTAAAACGCGTCTGTTAAGAGGAGGTTTCCACACCCTTATAAGAAATGTTTTGTTCTCCTCTCCAACCAATGTGGAATCTCACAATCCACCTCCTTGGGGACTCAAATTCTTCGTTCGCACACCGCTTGATGTCTAGCTCTGATACCATTTGTAACAACCCAAGTCCACCGCTAGTAGATATTGTCCTCTTTGGACTTTCCCTTCTGGATTTCCTCTTAAAGTTTGAAAACACGTATGTTAGAAACAAGTTTCTATATCCTTATAAGAAATGCAATCTCGAAACCAACACAATTTTCTCTTATCCTTTACTAAACACAATTGCTTGATATCCAACAGATCAAACCGTTAATACTGTTAATATTTAGAATGATAATTCGTGTCNTAAACACAATTGCTTGATATCCAACAGATCAAACCGTTAATACCGTTAATATTTAGAATGATAATTCGTGTCTTACCCATTTGCAGATTAGCTTGTTGGAAGAGGATATTCAAAAGTATTGGCCAACCTATAGATGTGGTACTACAGGCAACTGCCATGGTACCAAAGGATCATTTTGGGCTCATGAGGTTCATATCACTCTCTCTTTGTTCTTCCTTAGCTCATCTATCAAACTTTGAGACTAATCCCAAATTCATTTCCTTTTTCTCTTTGTTCTTATATGATCGCCATATCAAATGCTACCATTGCTGCAGTATGGTCAGTTTCTTCTTCTCTTCCAATCTTCTTGGAACTTGATATCTTGTTCTACTCAAATTCTAACCTAAACCCTCCATTTTCAGAGAAGCATGGGACCTGCGCAGCTCCTGTGATTGTCGGCGAATACGATTACTTCTTGACAACGCTCACCATCTTCTCCAAGTACAATGTCACCGTAAGTAATATATCTCTATTGGTACGAGAGCTTTTGATAAAGTCCAAAACAAATCCATGAGAGCTTATGCTCAAGATGGAAAATATCATACCATTATGGAGAGTCGTGATTACTAACATAGTATCAGAGTCATGTCTTAACTTAACCATGTCAATAGAATCTTCAAATATCGAACAAAGAAGATGTGAGCCTCGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGGGTGTATTTTGTTCGAGGACTTTGAGCCTCGATTAATGGGAAGCTATTTGAGGGTTCCATAAGCCTCAGGGGAGGCTCTCTAGTGAATTTTGTTCAAGATACATCTTCATTGGTAATTGGCCTTTTGAAAAGCGAGGGCTTATGCTCAAAGTAGACAGTATTATACCATTGTAGAGAGTCGTAACTTCTAACAAATTTGTGCCTTTTTGGTTGTGGGTATCAAATTTGGTGTCTTTTTTTGTTGGGGGTATCAAATTTGGTGTATTTTTGGTTGTGGGTATTAAATTTGGTGTCTTTTTTCGTTATGGGTATTAAATTTGGTGTCTTTTGCAATTTTTTTATGCCAGAAAGCATTGAGCGATGCTGGGTTTGTAGCTTCCAATACTGAGAAGTATGCTCTAGGAGACGTGGTGGATGCAGTTAAGAATGCTACCGATTCAACTCCGAAGATTAGCTGTGCTAAAAAGGGGGCTGTCAAGGAGCTTTGGATATGCTTTGACAAGAACTTTGAGGTGTTCTTTGTGTTCATAACAATCATATCTAATAAGCTTTTGAGTTCCATCAAATTGTTCATAGTTTTTGGTTGTTGCAGCCACGTGATTGTGACCTTGCCAATTCATGCCCCGACTTTATTAAGCTCCCAACGTATGAGTCTCAGGGTGTGATGGAGGGAGCTATTCCATGGATTGCTGATGCTGAAGCACTTGTTTAACCTGTTTTTGAAGCTCAAATTGGATGATCCTTCTTGATGTCTAATTATCACTCTTTGAACTATAAAAGAGAGAGATCTCTCCTTTCTTTTTGTAGTTTCAATGCTATGAACTTAACTTTTTCTTTTTCTAAGTCATATTCCATATAAGATATGGTCTATTACTTATCTTTCTTGCCTTCAATTATGTTCTTTTACTATGCCAAAAGAAAAATTAATGTTCTCTTCAACGACCCGAGTAAGATAAAAGAGGAGTATATGACTGAATCTTGTAAAAACCCGTTACGTATCGTCGTTAGTCTCAGGGTTTAAACAGGTCTTGCAGGGTTAGATAGCGAAATCAGTACTCATCCAAATACTGTCCTTTTTTGCTTTCTCTTCCTAGCTTCCCCTTAAAGTTTTTGGGTCTTGGGTTTTCTCTTCTACGCTTCCTCATTATGCATCTATACTCATCCAAATATTGTTTTCTTTAGACTTTTCCTTCCCGACTTTCCCTCGAGGTTTCTGGGTTTTCTCTTTTAGGGTTCCCATTACAAATCTATTAGGGGGAGGTTTGCATACCCTTATAAATAATGCTTCGTTCTCATCTCTAACCGATGTGGGATCACACAGATCTCGAGGATGAAAGTTACTACTTATACTAATAAAAGGTAACGATGTGTACTCTTTAATCAAAAGTGGACATTATTACTTATAAAGTATATATAGAAATATAAAAAGGTCACTCATTCCAATAAATGGTATTACAACATTTGAATTATTAAAGGTAGAGGGGAAAAAATTCATTATTTATTTATTTATTTTACTAAATATCTTTATTGAAAACACAAAGTAAAATGACATTTTTGCCCATCAAAACTACCAAAATTACCTTAACCTTGTATAAGTACTTGGAGAAAGAATAATAATAATAATAATAATAACATGGCTTCTTTCACGTTCAAAGCGGCGGCGCAGGTGGTGTTTATGGTTCTTGCTGTTACTCTTCCGCCGCAGGCGGCGGAGGGCCTCACCGTCGGCAAGGAGCAGAGGGAATTTGACTACTTTGTGTTGGCTCTTCAATGGCCAGGCTCTTCCTGCAGAAACGTAAGCATGTGCTGCCCCACCAATGGTTGCTGCCACCGGTGAGAGTTTCATCCATATTCTCGTAGTACCTGAAATGTTTCCGATCGTGTCGTGACTTTTTATTATCGAGCTAATTACGTTCTTGTTGTGCATGTCTCTCTAGAGCTGAATTTCCCGCCGAGTTTACAATTCGTAAGTGTGAAAGAAAAGAAGATTTTGTTATTGATTTGGATGTGATGTTCAATAATGATATCATAAAAGTTCGGGTTTGGTAAAAAAAATCTCGTAACCCAACTCGAACCATGTACACCCCTAATATAAGTGTTTGAAAATGGCTCGTGCAGATGGGCTATGGCCTCAATATCAAGAGAAAGGGTGGCCTTCATGTTGTACTAATGAAACCTTTAACGGAAATGAGGTTATTTTCTCTTACTCTCTCTAAAAATTAGGGTTTATTTATACGAAAACATTGACGAACCTGTGAACCGTACTATTTCTTTAAACCTTGTAGGTTAGTTCCTTGTTTGAGGATCTTGACCGTTACTGGCCAAGCTATCGGTGTGGTCTTGTGAGCAGTTGCGATAACAGAAAAGGATCATTTTGGGCTCACCAGGTTCAAATCCTCGAGTGAAAAATATAGTTTTGGTTTACGAAGTTTGACTTAGGGCTATGAGTTATCAAACTCAATGAATCACAACGACCCATCTTAAAATTAAAATGTCGAGTTTGAAAATTCAGATAACTAAATACTACTTAAGTCAAACTTCAAGAGTCAAAAGTATATTTTTCCCGAGTCTCAATCTCTCGGTTGTTTCTTCATTAGTTGATTATAAAAGTTTCGTGACTAAATCCCGAAATTCTCTCTTTTTCTCGGGTTATCATATGATGGATCATATGACATGTTACGTTTGATACAGTATGGTATGTTTTTTTTCTCCTTTAACAAAATATATTTTTGGGAGAAAAAAAAAACACATTTACAATACAATTTATTTTTGTGCAGAGAAGCATGGAACCTGTGGATCACCTGTAATCCTCCACCAATATGATTACTTCTTCACAACTCTCGCCCTTTTCTTTAACTACAATGTCACTGTAAGCTCTTACAAACCTCTCTCAAATGGATGTTTATGTGTGCCTTCTTTTCGATGCATAGCTCGGGTTACCATTCGGTGAAACAAACGAGAAATTATTGTATCACAAAAAATAAATGGAGAATTTTGATGATTGAAATAGGAGGTGGGAACGAGGACAGTAAAAGCTTTCTTGTTGTCTTTTATCTTCTACGGTTATCGATTTTCGACCGTTAAAATTTTAGGAAGCTCTGGAGGATGCTGAAATTGTAGCTTCTGATACCAAAAAGTATAGTATTAAAGATGTGTTTGAAGCTGTTCGGTCTGCTTTCAATGCAAATCCAAAGCTTACTTGCGGTAAAAAAGGGATTATTAAGGAACTTCGTCTATGCTTTGATAAAGAATTCAAGGTAATACATCACTTTGTGTCTATAAAAGACCTTAGCTACTAGTTTCCATCCAATATTTGCAACGATTTGAGGAACGTAAATCATTTACTCGTTGCAGCTAATCGATTGTGATGCTACAAAATCATGTCCCAAATTTGTTCGTCTACCAGAATTTCATGAACTACCGAGTAAGTTTCTTAGTTTCCTTGTTAAATTATCTTTATACTTAAGAATTCATTCGTGAATTTGAAAATGAAGGTAAGATTAAACAGAACAACGATACTAAAATTGAAGAGATTAGAACGAAAATAACACACCTAACTCTTTGATAATACGACAAATTATTTCATTAAACGTCAATATTTGAATTAATAATGAATATATTTATGTATTTAAGGTTGCTTTTGTTAACATTTATATTGTGTATTGCAGAGTCGACCATGGTTAAGAGAGCAATTCCAAGAATGATTGACGTTGAAGCAACTTCACTTTTTTTTGTCAAACAAAGTGTGAAATAGTTAACTTAGTTTGTCGAATAACAATTCAAAAAAGTTTCCATCTTTGTCGGAAAACATTTTCATAACTTCAATAACTTCAATCAAGCAATAAGAATAATTTTTTTTTAGAAAGAATATATGTCTTAACCAATTGAGCTAAGAAGTACTAATGGGAAGGTTAGATTAGTGATGTCGGTGGACGAAGAGCTTGCGAGAGGCGGTGTACCAGCGAGCATAGGAGGCATGGAGGTCGGGCCAGTCGGAGGAGGAGGAGTAAGTGAAATGGTGGAGCCACAGAGCCAAGACTTGTTCTTGATCGTCTTGTTGCAGTGTGGCTATCATCTCCTCCAACGCCGACTCCAACTCTCGGCGTTCCCCGATGCTTAGGATGGGCGCATCAGTCCCATTGATGCCTCTGCATAGCAATGGAAGCCATGAATTCAGCATCTTCAGCTTGGTTTGCATCTGCCGCCGCCGTCTCTCACTCTCTGCTTCTTCTTCCTTTCCCATTTCTCGGCATTGCTTGAACATGAATGCTACTCATGAAATCGTAAGTTGTCGTGGTTAGATATCAAAAATTATATGAAGATTGGAGAGAATTTCAGAGAATCCCATGAACATACCTGCGAGTTTAACTAATGAGCCCTGCAGTCGCGGCTCCGCCGCGAGAGAGAGTCTTCCCAATTGACCCGCCGAAGCCCACCGCCTACAAGCCTCACTCCGACAACCGCAACTCGCCATTTTTTCCGCTAACCACAGCGCCTCCGCCGCCAATTTCTCCGCCGATATTCTGGTCTGGTTTGCCGCCTCCTTTACCCTACCGAGCCGGCTATAAGCGGACTCTCCCAACAACCGAACCGCCCTCACAATCTGACCTAACCGGAACTCCGCCGGTCCATTCACGGACCCGCCACCACCGCCTTCAACGTCATCGTCCTGAAGAAACCCTAAGTCTAGCATCCGAGCTTCAATCTGGCCAATTGTCCGATCGAAGGCCGTGGAAAGAACCGCACGATTGACATCACGAAGTTCCTCAATCCCTTCCCAGTGATTCTCGTCGATTAACTTCTCCGCTAACGATCGAACCACTTCGTACTTGCGAGAACTGACTGGAATTTGACTGATAATCGACAACAATTGCGTTAGGGCTCGAGAAATCCCTAAATCGCCGCCTCCGCTTCCGTTTCCGCCGCCACCGTAACACACACTTTTTGAGGGTTTTAGAGGGAATCGATCGCCGGGAACCAGGTGGATTGAAGAGAAAAAGGAAGGAAGCAAACGGAGGAAAAAGAGGAAGAAGGAGACTAATAGGGTGTGAATAATCTCGAGGAGTTTGTATTTCTTAGACAAATTGATGAAGGATTTATCGGCACAGACGAAGAGAGAAGAGGCAAGACTCCGTAGAAGAACCGGAGCCATGGTGGTCGGAGAAGCTTCGGCTTAACCCATGGCGGTTGTTCCTGTATGCTTTTCCGGCGAAGGGTTGCTCTGTTTTTAAGCGGAGAGAAAAAGGACAGAGAAAGAAACGCAACGAGAATACCTTCTTCT

mRNA sequence

CACAACATCACCTGTCTTTCCATTTTTTAAAAATGGCTTCTTTCTCCATTAAATCCAACCCAATGGTGGTGGCGCCGGCGGTGTTTCTTCTTGTTCTTCAACTGGTGGCGGTGGTACTCGCGGCGGAGACTCCAAGCGGCGGTGGACAGAGGGAATTTGACTATTTTGTGTTGGCTCTTCAATGGCCAGCTACTTCTTGCAAGAACACGGGCAAGTGTTGCCCGGCCAATGGTTGCTGCCGTGGAGCTGACTCTCCCACTGAATTTACAATCCATGGGTTATGGCCTCAGTATAATGAGAGAGGATGGCCATCTTGTTGCACTGATGCAATTAGCTTGTTGGAAGAGGATATTCAAAAGTATTGGCCAACCTATAGATGTGGTACTACAGGCAACTGCCATGGTACCAAAGGATCATTTTGGGCTCATGAGAAAGCATTGAGCGATGCTGGGTTTGTAGCTTCCAATACTGAGAAGTATGCTCTAGGAGACGTGGTGGATGCAGTTAAGAATGCTACCGATTCAACTCCGAAGATTAGCTGTGCTAAAAAGGGGGCTGTCAAGGAGCTTTGGATATGCTTTGACAAGAACTTTGAGCCACGTGATTGTGACCTTGCCAATTCATGCCCCGACTTTATTAAGCTCCCAACGTATGAGTCTCAGGGTGTGATGGAGGGAGCTATTCCATGGATTGCTGATGCTGAAGCACTTGTGGTGTTTATGGTTCTTGCTGTTACTCTTCCGCCGCAGGCGGCGGAGGGCCTCACCGTCGGCAAGGAGCAGAGGGAATTTGACTACTTTGTGTTGGCTCTTCAATGGCCAGGCTCTTCCTGCAGAAACGTAAGCATGTGCTGCCCCACCAATGGTTGCTGCCACCGGTTAGTTCCTTGTTTGAGGATCTTGACCGTTACTGGCCAAGCTATCGAGAAGCATGGAACCTGTGGATCACCTGTAATCCTCCACCAATATGATTACTTCTTCACAACTCTCGCCCTTTTCTTTAACTACAATGTCACTTATAGTATTAAAGATGTGTTTGAAGCTGTTCGGTCTGCTTTCAATGCAAATCCAAAGCTTACTTGCGGTAAAAAAGGGATTATTAAGGAACTTCGTCTATGCTTTGATAAAGAATTCAAGCTAATCGATTGTGATGCTACAAAATCATGTCCCAAATTTGTTCGTCTACCAGAATTTCATGAACTACCGAAGTCGACCATGGTTAAGAGAGCAATTCCAAGAATGATTGACGTTGAAGCAACTTCACTTTTTTTTGTCAAACAAAGTGTGAAATAGTTAACTTAGTTTGTCGAATAACAATTCAAAAAAGTTTCCATCTTTGTCGGAAAACATTTTCATAACTTCAATAACTTCAATCAAGCAATAAGAATAATTTTTTTTTAGAAAGAATATATGTCTTAACCAATTGAGCTAAGAAGTACTAATGGGAAGGTTAGATTAGTGATGTCGGTGGACGAAGAGCTTGCGAGAGGCGGTGTACCAGCGAGCATAGGAGGCATGGAGGTCGGGCCAGTCGGAGGAGGAGGAGTAAGTGAAATGGTGGAGCCACAGAGCCAAGACTTGTTCTTGATCGTCTTGTTGCAGTGTGGCTATCATCTCCTCCAACGCCGACTCCAACTCTCGGCGTTCCCCGATGCTTAGGATGGGCGCATCAGTCCCATTGATGCCTCTGCATAGCAATGGAAGCCATGAATTCAGCATCTTCAGCTTGGTTTGCATCTGCCGCCGCCGTCTCTCACTCTCTGCTTCTTCTTCCTTTCCCATTTCTCGGCATTGCTTGAACATGAATGCTACTCATGAAATCGTAAGTTGTCGTGGTTAGATATCAAAAATTATATGAAGATTGGAGAGAATTTCAGAGAATCCCATGAACATACCTGCGAGTTTAACTAATGAGCCCTGCAGTCGCGGCTCCGCCGCGAGAGAGAGTCTTCCCAATTGACCCGCCGAAGCCCACCGCCTACAAGCCTCACTCCGACAACCGCAACTCGCCATTTTTTCCGCTAACCACAGCGCCTCCGCCGCCAATTTCTCCGCCGATATTCTGGTCTGGTTTGCCGCCTCCTTTACCCTACCGAGCCGGCTATAAGCGGACTCTCCCAACAACCGAACCGCCCTCACAATCTGACCTAACCGGAACTCCGCCGGTCCATTCACGGACCCGCCACCACCGCCTTCAACGTCATCGTCCTGAAGAAACCCTAAGTCTAGCATCCGAGCTTCAATCTGGCCAATTGTCCGATCGAAGGCCGTGGAAAGAACCGCACGATTGACATCACGAAGTTCCTCAATCCCTTCCCAGTGATTCTCGTCGATTAACTTCTCCGCTAACGATCGAACCACTTCGTACTTGCGAGAACTGACTGGAATTTGACTGATAATCGACAACAATTGCGTTAGGGCTCGAGAAATCCCTAAATCGCCGCCTCCGCTTCCGTTTCCGCCGCCACCGTAACACACACTTTTTGAGGGTTTTAGAGGGAATCGATCGCCGGGAACCAGGTGGATTGAAGAGAAAAAGGAAGGAAGCAAACGGAGGAAAAAGAGGAAGAAGGAGACTAATAGGGTGTGAATAATCTCGAGGAGTTTGTATTTCTTAGACAAATTGATGAAGGATTTATCGGCACAGACGAAGAGAGAAGAGGCAAGACTCCGTAGAAGAACCGGAGCCATGGTGGTCGGAGAAGCTTCGGCTTAACCCATGGCGGTTGTTCCTGTATGCTTTTCCGGCGAAGGGTTGCTCTGTTTTTAAGCGGAGAGAAAAAGGACAGAGAAAGAAACGCAACGAGAATACCTTCTTCT

Coding sequence (CDS)

ATGGCTTCTTTCTCCATTAAATCCAACCCAATGGTGGTGGCGCCGGCGGTGTTTCTTCTTGTTCTTCAACTGGTGGCGGTGGTACTCGCGGCGGAGACTCCAAGCGGCGGTGGACAGAGGGAATTTGACTATTTTGTGTTGGCTCTTCAATGGCCAGCTACTTCTTGCAAGAACACGGGCAAGTGTTGCCCGGCCAATGGTTGCTGCCGTGGAGCTGACTCTCCCACTGAATTTACAATCCATGGGTTATGGCCTCAGTATAATGAGAGAGGATGGCCATCTTGTTGCACTGATGCAATTAGCTTGTTGGAAGAGGATATTCAAAAGTATTGGCCAACCTATAGATGTGGTACTACAGGCAACTGCCATGGTACCAAAGGATCATTTTGGGCTCATGAGAAAGCATTGAGCGATGCTGGGTTTGTAGCTTCCAATACTGAGAAGTATGCTCTAGGAGACGTGGTGGATGCAGTTAAGAATGCTACCGATTCAACTCCGAAGATTAGCTGTGCTAAAAAGGGGGCTGTCAAGGAGCTTTGGATATGCTTTGACAAGAACTTTGAGCCACGTGATTGTGACCTTGCCAATTCATGCCCCGACTTTATTAAGCTCCCAACGTATGAGTCTCAGGGTGTGATGGAGGGAGCTATTCCATGGATTGCTGATGCTGAAGCACTTGTGGTGTTTATGGTTCTTGCTGTTACTCTTCCGCCGCAGGCGGCGGAGGGCCTCACCGTCGGCAAGGAGCAGAGGGAATTTGACTACTTTGTGTTGGCTCTTCAATGGCCAGGCTCTTCCTGCAGAAACGTAAGCATGTGCTGCCCCACCAATGGTTGCTGCCACCGGTTAGTTCCTTGTTTGAGGATCTTGACCGTTACTGGCCAAGCTATCGAGAAGCATGGAACCTGTGGATCACCTGTAATCCTCCACCAATATGATTACTTCTTCACAACTCTCGCCCTTTTCTTTAACTACAATGTCACTTATAGTATTAAAGATGTGTTTGAAGCTGTTCGGTCTGCTTTCAATGCAAATCCAAAGCTTACTTGCGGTAAAAAAGGGATTATTAAGGAACTTCGTCTATGCTTTGATAAAGAATTCAAGCTAATCGATTGTGATGCTACAAAATCATGTCCCAAATTTGTTCGTCTACCAGAATTTCATGAACTACCGAAGTCGACCATGGTTAAGAGAGCAATTCCAAGAATGATTGACGTTGAAGCAACTTCACTTTTTTTTGTCAAACAAAGTGTGAAATAG

Protein sequence

MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTGKCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDAISLLEEDIQKYWPTYRCGTTGNCHGTKGSFWAHEKALSDAGFVASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPDFIKLPTYESQGVMEGAIPWIADAEALVVFMVLAVTLPPQAAEGLTVGKEQREFDYFVLALQWPGSSCRNVSMCCPTNGCCHRLVPCLRILTVTGQAIEKHGTCGSPVILHQYDYFFTTLALFFNYNVTYSIKDVFEAVRSAFNANPKLTCGKKGIIKELRLCFDKEFKLIDCDATKSCPKFVRLPEFHELPKSTMVKRAIPRMIDVEATSLFFVKQSVK

Homology

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BLAST of Cp4.1LG14g05080 vs. ExPASy Swiss-Prot
Match: P42814 (Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-51
Identity = 101/234 (43.16%), Postives = 133/234 (56.84%), Query Frame = 0


Query: 19  LLVLQLVAVVLAAET-PSGGGQREFDYFVLALQWPATSCKNTGKCCPANGCCRGADSPTE 78
           LL++  +A   A +       QREFDYF L+LQWP T C+ T  CC  N CCRG+D+PT+
Sbjct: 8   LLLVACIAGAFAGDVIELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQ 67

Query: 79  FTIHGLWPQYNERGWPSCC------TDAISLLEEDIQKYWPTYRCGTTGNCHGTKGSFWA 138
           FTIHGLWP YN+  WPSCC         IS L + ++KYWP+  CG+  +C+G KGSFW 
Sbjct: 68  FTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWG 127

Query: 139 HE--------------------------------KALSDAGFVASNTEKYALGDVVDAVK 198
           HE                                  L  AG+VASN+EKY LG +V A++
Sbjct: 128 HEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQ 187

Query: 199 NATDSTPKISCAKKGAVKELWICFDKNFEPRDC----DLAN--SCPDFIKLPTY 208
           NA   TP++ C K+ A+ E+ ICF K+F+PRDC    DL +  SCP ++ LP Y
Sbjct: 188 NAFHITPEVVC-KRDAIDEIRICFYKDFKPRDCVGSQDLTSRKSCPKYVSLPEY 240

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BLAST of Cp4.1LG14g05080 vs. ExPASy Swiss-Prot
Match: P42813 (Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-14
Identity = 55/209 (26.32%), Postives = 89/209 (42.58%), Query Frame = 0


Query: 20  LVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTGKCCPANGCCRGADSPTEFT 79
           L L  + V+L +   +     +FD+F    QWP + C    KCC  N     AD    F 
Sbjct: 8   LCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAAD----FG 67

Query: 80  IHGLWPQYNERGWPSCC-------TDAISLLEEDIQKYWPTYRCGTTGNCHGTKGSFWAH 139
           IHGLWP Y +  +PS C       +  IS L   ++K WPT  C +     G+  +FW H
Sbjct: 68  IHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPS-----GSGEAFWEH 127

Query: 140 E-------------------------------KALSDAGFVASNTEKYALGDVVDAVKNA 187
           E                                AL+ AG +  + + Y+L  + D++K +
Sbjct: 128 EWEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAG-INPDGKSYSLESIRDSIKES 187

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BLAST of Cp4.1LG14g05080 vs. ExPASy Swiss-Prot
Match: P42815 (Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-13
Identity = 55/211 (26.07%), Postives = 82/211 (38.86%), Query Frame = 0


Query: 17  VFLLVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTGKCC-PANGCCRGADSP 76
           +F+L LQ + V   A+        +FD+F   LQWP   C +   CC P  G        
Sbjct: 5   IFILALQQLYVQSFAQ--------DFDFFYFVLQWPGAYCDSRHSCCYPQTG-----KPA 64

Query: 77  TEFTIHGLWPQYNERGWPSCCTD-------AISLLEEDIQKYWPTYRCGTTGNCHGTKGS 136
            +F IHGLWP Y   GWP  C          +S L  D+Q+ WPT  C +          
Sbjct: 65  ADFGIHGLWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGM-----K 124

Query: 137 FWAHE-------------------------------KALSDAGFVASNTEKYALGDVVDA 185
           FW HE                                AL++AG +  + + Y + D+ + 
Sbjct: 125 FWTHEWEKHGTCAESELDQHDYFEAGLKLKQKANLLHALTNAG-IKPDDKFYEMKDIENT 184

[Close]

BLAST of Cp4.1LG14g05080 vs. ExPASy Swiss-Prot
Match: P80196 (Intracellular ribonuclease LX OS=Solanum lycopersicum OX=4081 GN=RNALX PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-13
Identity = 51/215 (23.72%), Postives = 84/215 (39.07%), Query Frame = 0


Query: 40  REFDYFVLALQWPATSCKNTGKCC-PANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTD 99
           ++FD+F    QWPA+ C     CC P  G         +F+IHGLWP Y +  WP  C  
Sbjct: 26  QDFDFFYFVQQWPASYCDTRRSCCYPTTG-----KPDEDFSIHGLWPNYKDGKWPQNCDR 85

Query: 100 AISLLEED-------IQKYWPTYRCGTTGNCHGTKGSFWAHE------------------ 159
             SL E +       ++K WP+  C ++         FW+HE                  
Sbjct: 86  ESSLDESEFSDLISTMEKNWPSLACPSSDGL-----KFWSHEWLKHGTCSALNQHAYFQT 145

Query: 160 -----------KALSDAGFVASNTEKYALGDVVDAVKNATDSTPKISC----AKKGAVKE 210
                      + L++AG    N + Y +  +  A++     TP I C         + +
Sbjct: 146 ALDFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIEKGVGHTPFIECNVDSQGNHQLYQ 205

[Close]

BLAST of Cp4.1LG14g05080 vs. ExPASy Swiss-Prot
Match: P80022 (Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 8.9e-11
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 17  VFLLVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTGKCC-PANGCCRGADSP 76
           + L++ Q ++V+ AA        ++FD+F    QWP + C     CC P  G        
Sbjct: 12  ILLIITQCLSVLNAA--------KDFDFFYFVQQWPGSYCDTKQSCCYPTTG-----KPA 71

Query: 77  TEFTIHGLWPQYNERGWPSCC-------TDAISLLEEDIQKYWPTYRCGTTGNCHGTKGS 134
            +F IHGLWP  N+  +PS C          IS L   +Q+ WPT  C +     G+  +
Sbjct: 72  ADFGIHGLWPNNNDGTYPSNCDPNSPYDQSQISDLISSMQQNWPTLACPS-----GSGST 118

[Close]

BLAST of Cp4.1LG14g05080 vs. NCBI nr
Match: KAG7014875.1 (Ribonuclease 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 775 bits (2000), Expect = 8.61e-282
Identity = 372/408 (91.18%), Postives = 380/408 (93.14%), Query Frame = 0


Query: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTG 60
           MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGG QREFDYFVLALQWPATSCKNTG
Sbjct: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGGEQREFDYFVLALQWPATSCKNTG 60

Query: 61  KCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDAISLLEEDIQKYWPTYRCGTTG 120
           KCCPANGCCRGADSPTEFTIHGLWPQYNE+GWPSCCTDAISLL EDI+KYWPTY CGTT 
Sbjct: 61  KCCPANGCCRGADSPTEFTIHGLWPQYNEKGWPSCCTDAISLLREDIEKYWPTYGCGTTS 120

Query: 121 NCHGTKGSFWAHEKALSDAGFVASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELW 180
           NCHGTKGSFWAHEKALSDAGFVASNTEKY L DVVDAVKNAT+STPKISCAKKGAVKELW
Sbjct: 121 NCHGTKGSFWAHEKALSDAGFVASNTEKYPLEDVVDAVKNATNSTPKISCAKKGAVKELW 180

Query: 181 ICFDKNFEPRDCDLANSCPDFIKLPTYESQGVMEGAIPWIADAEALVVFMVLAVTLPPQA 240
           ICFDK FEPRDCDLANSCP+FIKLPTYE Q V              VVFMVLAVTLPPQA
Sbjct: 181 ICFDKKFEPRDCDLANSCPEFIKLPTYEPQDV--------------VVFMVLAVTLPPQA 240

Query: 241 AEGLTVGKEQREFDYFVLALQWPGSSCRNVSMCCPTNGCCHRLVPCLRILTVTGQAIEKH 300
           AEGLTVG+EQREFDYFVLALQWPGSSCRNVSMCCPTNGCCHRLVPCL+ILTVTGQAIEKH
Sbjct: 241 AEGLTVGREQREFDYFVLALQWPGSSCRNVSMCCPTNGCCHRLVPCLKILTVTGQAIEKH 300

Query: 301 GTCGSPVILHQYDYFFTTLALFFNYNVTYSIKDVFEAVRSAFNANPKLTCGKKGIIKELR 360
           GTCGSPVILHQYDYFFTTLALFFNYNVTY I+DVFEAVRSAFNANP LTCG+KGIIKELR
Sbjct: 301 GTCGSPVILHQYDYFFTTLALFFNYNVTYGIEDVFEAVRSAFNANPMLTCGRKGIIKELR 360

Query: 361 LCFDKEFKLIDCDATKSCPKFVRLPEFHELPKSTMVKRAIPRMIDVEA 408
           LCFDKEFKLIDCDATKSCPKFVRLPEFHEL K  MVKRAIPRMIDVEA
Sbjct: 361 LCFDKEFKLIDCDATKSCPKFVRLPEFHELSKPAMVKRAIPRMIDVEA 394

[Close]

BLAST of Cp4.1LG14g05080 vs. NCBI nr
Match: XP_023553229.1 (ribonuclease 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 459 bits (1181), Expect = 3.33e-159
Identity = 227/265 (85.66%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTG 60
           MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTG
Sbjct: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTG 60

Query: 61  KCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDA------ISLLEEDIQKYWPTY 120
           KCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDA      ISLLEEDIQKYWPTY
Sbjct: 61  KCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDAVFNQNEISLLEEDIQKYWPTY 120

Query: 121 RCGTTGNCHGTKGSFWAHE--------------------------------KALSDAGFV 180
           RCGTTGNCHGTKGSFWAHE                                KALSDAGFV
Sbjct: 121 RCGTTGNCHGTKGSFWAHEYEKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKALSDAGFV 180

Query: 181 ASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPDFI 227
           ASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPDFI
Sbjct: 181 ASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPDFI 240

[Close]

BLAST of Cp4.1LG14g05080 vs. NCBI nr
Match: KAE8649307.1 (hypothetical protein Csa_015411 [Cucumis sativus])

HSP 1 Score: 457 bits (1175), Expect = 3.95e-156
Identity = 246/463 (53.13%), Postives = 280/463 (60.48%), Query Frame = 0


Query: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVL--AAETPSGGGQREFDYFVLALQWPATSCKN 60
           MAS SIK+  MV    V +++LQL+ VV   +AE PS   QREFDYFVLALQWP +SCKN
Sbjct: 1   MASLSIKAKAMVF---VVVVLLQLLTVVFGFSAEAPSSSEQREFDYFVLALQWPGSSCKN 60

Query: 61  TGKCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDA------ISLLEEDIQKYWP 120
            GKCCP+N CCRGA+SPTEFTIHGLWPQYNE+GWPSCCTDA      I++L EDIQKYWP
Sbjct: 61  PGKCCPSNACCRGAESPTEFTIHGLWPQYNEKGWPSCCTDASFNENEINILTEDIQKYWP 120

Query: 121 TYRCGTTGNCHGTKGSFWAHE--------------------------------KALSDAG 180
           TYRCGTT  CH TKGSFWAHE                                K LSDAG
Sbjct: 121 TYRCGTTSTCHQTKGSFWAHEYEKHGTCAAPVIVGEYDYFLTTITIFSKYNVTKVLSDAG 180

Query: 181 FVASNTEKYALGDVVDAVKNA-TDSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCP 240
           FVASNTEKY + DVV A+KN   ++TPKISCAKKGAVKELW+CFDK+FEPRDC+L NSCP
Sbjct: 181 FVASNTEKYPIEDVVAAIKNEFNNATPKISCAKKGAVKELWLCFDKSFEPRDCNLPNSCP 240

Query: 241 DFIKLPTYESQGVMEGAIPWIADAEALVVFMVLAVTLPPQAAEGLTVGKEQREFDYFVLA 300
           DFIK PTYE Q V +                                             
Sbjct: 241 DFIKFPTYEPQDVDK--------------------------------------------- 300

Query: 301 LQWPGSSCRNVSMCCPTNGCCHRLVPCLRILTVTGQAIEKHGTCGSPVILHQYDYFFTTL 360
             WP   C  VS C    G            +      EKHGTCGSPVIL +YDYF TTL
Sbjct: 301 -YWPTYRCGLVSSCDNRKG------------SFWAHQYEKHGTCGSPVILQEYDYFLTTL 360

Query: 361 ALFFNYNVT---------------YSIKDVFEAVRSAFNANPKLTCGKKGIIKELRLCFD 407
            LF+ YNVT               Y I+DV  AV SAF  NPKL C KKGIIKE+ LCFD
Sbjct: 361 TLFYKYNVTEALENAEIVASDTKKYPIQDVLNAVHSAFKVNPKLACVKKGIIKEIYLCFD 402

[Close]

BLAST of Cp4.1LG14g05080 vs. NCBI nr
Match: XP_022922895.1 (ribonuclease 2-like [Cucurbita moschata])

HSP 1 Score: 429 bits (1104), Expect = 1.67e-147
Identity = 211/265 (79.62%), Postives = 219/265 (82.64%), Query Frame = 0


Query: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTG 60
           MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGG QREFDYFVLALQWPATSCKNTG
Sbjct: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGGEQREFDYFVLALQWPATSCKNTG 60

Query: 61  KCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDA------ISLLEEDIQKYWPTY 120
           KCCPANGCCRGADSPTEFTIHGLWPQYNE+GWPSCCTDA      I+LL+EDI+KYWPTY
Sbjct: 61  KCCPANGCCRGADSPTEFTIHGLWPQYNEKGWPSCCTDAVFSQNEITLLKEDIEKYWPTY 120

Query: 121 RCGTTGNCHGTKGSFWAHE--------------------------------KALSDAGFV 180
           RCGTT NCHGTKGSFWAHE                                KALSDAGFV
Sbjct: 121 RCGTTSNCHGTKGSFWAHEYEKHGTCAAPVIVGEFDYFLTTLTIFSKYNVTKALSDAGFV 180

Query: 181 ASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPDFI 227
           ASNTEKY L DVVDAVKNAT+STPKISCAKKGAVKELWICFDK FEPRDCDLANSCP+FI
Sbjct: 181 ASNTEKYPLEDVVDAVKNATNSTPKISCAKKGAVKELWICFDKKFEPRDCDLANSCPEFI 240

[Close]

BLAST of Cp4.1LG14g05080 vs. NCBI nr
Match: XP_022984766.1 (ribonuclease 2-like [Cucurbita maxima])

HSP 1 Score: 427 bits (1099), Expect = 1.03e-146
Identity = 213/267 (79.78%), Postives = 221/267 (82.77%), Query Frame = 0


Query: 1   MASFSIKSNPMVVAPAVFLLV-LQLVAVVLAAETPSGGG-QREFDYFVLALQWPATSCKN 60
           MASF IKSNPMVVAPAVFLL+ LQLVAVVLAAETPSGGG Q+EFDYFVLALQWPATSCKN
Sbjct: 1   MASFYIKSNPMVVAPAVFLLLALQLVAVVLAAETPSGGGGQKEFDYFVLALQWPATSCKN 60

Query: 61  TGKCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDA------ISLLEEDIQKYWP 120
           TGKCCPANGCCRGADSPTEFTIHGLWPQYNE+GWPSCCTDA      ISLL EDI+KYWP
Sbjct: 61  TGKCCPANGCCRGADSPTEFTIHGLWPQYNEKGWPSCCTDAVFNQNEISLLSEDIEKYWP 120

Query: 121 TYRCGTTGNCHGTKGSFWAHE--------------------------------KALSDAG 180
           TYRCGTT NCHGTKGSFWAHE                                KALSDAG
Sbjct: 121 TYRCGTTSNCHGTKGSFWAHEYEKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKALSDAG 180

Query: 181 FVASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPD 227
           FVASNTEKY LGDVVDAVKNAT+STPKISCAKKGAVKELWICFDKNFEPRDCDLANSCP+
Sbjct: 181 FVASNTEKYPLGDVVDAVKNATNSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPE 240

[Close]

BLAST of Cp4.1LG14g05080 vs. ExPASy TrEMBL
Match: A0A6J1EA39 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111430737 PE=3 SV=1)

HSP 1 Score: 429 bits (1104), Expect = 8.10e-148
Identity = 211/265 (79.62%), Postives = 219/265 (82.64%), Query Frame = 0


Query: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTG 60
           MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGG QREFDYFVLALQWPATSCKNTG
Sbjct: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVLAAETPSGGEQREFDYFVLALQWPATSCKNTG 60

Query: 61  KCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDA------ISLLEEDIQKYWPTY 120
           KCCPANGCCRGADSPTEFTIHGLWPQYNE+GWPSCCTDA      I+LL+EDI+KYWPTY
Sbjct: 61  KCCPANGCCRGADSPTEFTIHGLWPQYNEKGWPSCCTDAVFSQNEITLLKEDIEKYWPTY 120

Query: 121 RCGTTGNCHGTKGSFWAHE--------------------------------KALSDAGFV 180
           RCGTT NCHGTKGSFWAHE                                KALSDAGFV
Sbjct: 121 RCGTTSNCHGTKGSFWAHEYEKHGTCAAPVIVGEFDYFLTTLTIFSKYNVTKALSDAGFV 180

Query: 181 ASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPDFI 227
           ASNTEKY L DVVDAVKNAT+STPKISCAKKGAVKELWICFDK FEPRDCDLANSCP+FI
Sbjct: 181 ASNTEKYPLEDVVDAVKNATNSTPKISCAKKGAVKELWICFDKKFEPRDCDLANSCPEFI 240

[Close]

BLAST of Cp4.1LG14g05080 vs. ExPASy TrEMBL
Match: A0A6J1J670 (Ribonuclease T(2) OS=Cucurbita maxima OX=3661 GN=LOC111482949 PE=3 SV=1)

HSP 1 Score: 427 bits (1099), Expect = 5.00e-147
Identity = 213/267 (79.78%), Postives = 221/267 (82.77%), Query Frame = 0


Query: 1   MASFSIKSNPMVVAPAVFLLV-LQLVAVVLAAETPSGGG-QREFDYFVLALQWPATSCKN 60
           MASF IKSNPMVVAPAVFLL+ LQLVAVVLAAETPSGGG Q+EFDYFVLALQWPATSCKN
Sbjct: 1   MASFYIKSNPMVVAPAVFLLLALQLVAVVLAAETPSGGGGQKEFDYFVLALQWPATSCKN 60

Query: 61  TGKCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDA------ISLLEEDIQKYWP 120
           TGKCCPANGCCRGADSPTEFTIHGLWPQYNE+GWPSCCTDA      ISLL EDI+KYWP
Sbjct: 61  TGKCCPANGCCRGADSPTEFTIHGLWPQYNEKGWPSCCTDAVFNQNEISLLSEDIEKYWP 120

Query: 121 TYRCGTTGNCHGTKGSFWAHE--------------------------------KALSDAG 180
           TYRCGTT NCHGTKGSFWAHE                                KALSDAG
Sbjct: 121 TYRCGTTSNCHGTKGSFWAHEYEKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKALSDAG 180

Query: 181 FVASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPD 227
           FVASNTEKY LGDVVDAVKNAT+STPKISCAKKGAVKELWICFDKNFEPRDCDLANSCP+
Sbjct: 181 FVASNTEKYPLGDVVDAVKNATNSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPE 240

[Close]

BLAST of Cp4.1LG14g05080 vs. ExPASy TrEMBL
Match: A0A6J1CGP7 (Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111011504 PE=3 SV=1)

HSP 1 Score: 347 bits (890), Expect = 2.63e-115
Identity = 173/268 (64.55%), Postives = 191/268 (71.27%), Query Frame = 0


Query: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVLAA-ETPSGGGQREFDYFVLALQWPATSCKNT 60
           MAS SIK NP   A    L+VLQL A   AA   P    QREFDYFVLALQWPATSC N 
Sbjct: 1   MASSSIKGNPTAAATVFLLVVLQLQAAAFAAGAAPGSEEQREFDYFVLALQWPATSCTNP 60

Query: 61  GKCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDA------ISLLEEDIQKYWPT 120
           GKCCP+NGCCRGA+SPTEFTIHGLWPQY E+GWPSCC+DA      I  L +DIQKYWPT
Sbjct: 61  GKCCPSNGCCRGAESPTEFTIHGLWPQYEEKGWPSCCSDASFSENEILSLNKDIQKYWPT 120

Query: 121 YRCGTTGNCHGTKGSFWAHE--------------------------------KALSDAGF 180
           YRCGTT  CH TKGSFWAHE                                K L+DAGF
Sbjct: 121 YRCGTTSTCHRTKGSFWAHEYEKHGTCAAPVIVGEFDYFLTTLTIFSKYNVTKVLNDAGF 180

Query: 181 VASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPDF 227
           VAS+TEKYALGDVV AV++A ++TPKISCAKKGAVKELW+CFDK F+PRDCDLANSCPDF
Sbjct: 181 VASDTEKYALGDVVAAVQDAFNATPKISCAKKGAVKELWLCFDKTFQPRDCDLANSCPDF 240

[Close]

BLAST of Cp4.1LG14g05080 vs. ExPASy TrEMBL
Match: A0A5A7V3T6 (Ribonuclease T(2) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00520 PE=3 SV=1)

HSP 1 Score: 342 bits (877), Expect = 2.13e-113
Identity = 169/268 (63.06%), Postives = 192/268 (71.64%), Query Frame = 0


Query: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVL--AAETPSGGGQREFDYFVLALQWPATSCKN 60
           MASFSIK  PMV       L+++L+ VV   +AE PSG  QREFDYFVLALQWPATSCKN
Sbjct: 1   MASFSIKGKPMVF----LFLIVELLTVVFGFSAEAPSGSEQREFDYFVLALQWPATSCKN 60

Query: 61  TGKCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDA------ISLLEEDIQKYWP 120
            GKCCP+N CCRGADSPTEFTIHGLWPQYNE+GWPSCCTDA      I +L EDIQKYWP
Sbjct: 61  AGKCCPSNACCRGADSPTEFTIHGLWPQYNEKGWPSCCTDASFNENEIGILAEDIQKYWP 120

Query: 121 TYRCGTTGNCHGTKGSFWAHEK------------------------------ALSDAGFV 180
           TYRCGT+  CH TKGSFWAHEK                               LS+ GFV
Sbjct: 121 TYRCGTSSTCHRTKGSFWAHEKHGTCAAPVLVGEYDYFLTALTIFSKYNVTKVLSEGGFV 180

Query: 181 ASNTEKYALGDVVDAVKNAT-DSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCPDF 227
           ASNTEKY + DV+ A+KN   ++TPKI+CAKKG VKELW+CFDK+FEPRDC+L +SCPDF
Sbjct: 181 ASNTEKYPIEDVIAAIKNKFYNATPKITCAKKGVVKELWLCFDKSFEPRDCNLQHSCPDF 240

[Close]

BLAST of Cp4.1LG14g05080 vs. ExPASy TrEMBL
Match: A0A1S3CHX1 (Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501148 PE=3 SV=1)

HSP 1 Score: 341 bits (875), Expect = 4.58e-113
Identity = 169/270 (62.59%), Postives = 192/270 (71.11%), Query Frame = 0


Query: 1   MASFSIKSNPMVVAPAVFLLVLQLVAVVL--AAETPSGGGQREFDYFVLALQWPATSCKN 60
           MASFSIK  PMV       L+++L+ VV   +AE PSG  QREFDYFVLALQWPATSCKN
Sbjct: 1   MASFSIKGKPMVF----LFLIVELLTVVFGFSAEAPSGSEQREFDYFVLALQWPATSCKN 60

Query: 61  TGKCCPANGCCRGADSPTEFTIHGLWPQYNERGWPSCCTDA------ISLLEEDIQKYWP 120
            GKCCP+N CCRGADSPTEFTIHGLWPQYNE+GWPSCCTDA      I +L EDIQKYWP
Sbjct: 61  AGKCCPSNACCRGADSPTEFTIHGLWPQYNEKGWPSCCTDASFNENEIGILAEDIQKYWP 120

Query: 121 TYRCGTTGNCHGTKGSFWAHE--------------------------------KALSDAG 180
           TYRCGT+  CH TKGSFWAHE                                K LS+ G
Sbjct: 121 TYRCGTSSTCHRTKGSFWAHEYEKHGTCAAPVLVGEYDYFLTALTIFSKYNVTKVLSEGG 180

Query: 181 FVASNTEKYALGDVVDAVKNAT-DSTPKISCAKKGAVKELWICFDKNFEPRDCDLANSCP 227
           FVASNTEKY + DV+ A+KN   ++TPKI+CAKKG VKELW+CFDK+FEPRDC+L +SCP
Sbjct: 181 FVASNTEKYPIEDVIAAIKNKFYNATPKITCAKKGVVKELWLCFDKSFEPRDCNLQHSCP 240

[Close]

BLAST of Cp4.1LG14g05080 vs. TAIR 10
Match: AT2G39780.2 (ribonuclease 2 )

HSP 1 Score: 219.9 bits (559), Expect = 3.8e-57
Identity = 101/202 (50.00%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 19  LLVLQLVAVVLAAET-PSGGGQREFDYFVLALQWPATSCKNTGKCCPANGCCRGADSPTE 78
           LL++  +A   A +       QREFDYF L+LQWP T C+ T  CC  N CCRG+D+PT+
Sbjct: 8   LLLVACIAGAFAGDVIELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQ 67

Query: 79  FTIHGLWPQYNERGWPSCC------TDAISLLEEDIQKYWPTYRCGTTGNCHGTKGSFWA 138
           FTIHGLWP YN+  WPSCC         IS L + ++KYWP+  CG+  +C+G KGSFW 
Sbjct: 68  FTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWG 127

Query: 139 HEKALSDAGFVASNTEKYALGDVVDAVKNATDSTPKISCAKKGAVKELWICFDKNFEPRD 198
           HE  L  AG+VASN+EKY LG +V A++NA   TP++ C K+ A+ E+ ICF K+F+PRD
Sbjct: 128 HEDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVC-KRDAIDEIRICFYKDFKPRD 187

Query: 199 C----DLAN--SCPDFIKLPTY 208
           C    DL +  SCP ++ LP Y
Sbjct: 188 CVGSQDLTSRKSCPKYVSLPEY 208

[Close]

BLAST of Cp4.1LG14g05080 vs. TAIR 10
Match: AT2G39780.1 (ribonuclease 2 )

HSP 1 Score: 203.4 bits (516), Expect = 3.6e-52
Identity = 101/234 (43.16%), Postives = 133/234 (56.84%), Query Frame = 0


Query: 19  LLVLQLVAVVLAAET-PSGGGQREFDYFVLALQWPATSCKNTGKCCPANGCCRGADSPTE 78
           LL++  +A   A +       QREFDYF L+LQWP T C+ T  CC  N CCRG+D+PT+
Sbjct: 8   LLLVACIAGAFAGDVIELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQ 67

Query: 79  FTIHGLWPQYNERGWPSCC------TDAISLLEEDIQKYWPTYRCGTTGNCHGTKGSFWA 138
           FTIHGLWP YN+  WPSCC         IS L + ++KYWP+  CG+  +C+G KGSFW 
Sbjct: 68  FTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWG 127

Query: 139 HE--------------------------------KALSDAGFVASNTEKYALGDVVDAVK 198
           HE                                  L  AG+VASN+EKY LG +V A++
Sbjct: 128 HEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQ 187

Query: 199 NATDSTPKISCAKKGAVKELWICFDKNFEPRDC----DLAN--SCPDFIKLPTY 208
           NA   TP++ C K+ A+ E+ ICF K+F+PRDC    DL +  SCP ++ LP Y
Sbjct: 188 NAFHITPEVVC-KRDAIDEIRICFYKDFKPRDCVGSQDLTSRKSCPKYVSLPEY 240

[Close]

BLAST of Cp4.1LG14g05080 vs. TAIR 10
Match: AT1G14220.1 (Ribonuclease T2 family protein )

HSP 1 Score: 82.4 bits (202), Expect = 9.4e-16
Identity = 59/214 (27.57%), Postives = 83/214 (38.79%), Query Frame = 0


Query: 39  QREFDYFVLALQWPATSCKNTGKCC-PANGCCRGADSPTEFTIHGLWPQYNERGWPSCC- 98
           Q +FD+F   LQWP   C  +  CC P +G         +F IHGLWP YN   WPS C 
Sbjct: 25  QEDFDFFYFVLQWPGAYCDTSRACCYPTSG-----KPAADFGIHGLWPNYNGGSWPSNCD 84

Query: 99  ------TDAISLLEEDIQKYWPTYRCGTTGNCHGTKGSFWAHE--------KALSDAGFV 158
                    IS L   ++K WPT  C +         +FW HE        +++ D    
Sbjct: 85  PDSQFDRSQISDLVSSLKKNWPTLSCPSNEGF-----NFWEHEWEKHGTCSESVMDQHEY 144

Query: 159 ASNTEK----------------------YALGDVVDAVKNATDSTPKISCAK----KGAV 208
             N  K                      Y L  + +A+K+    TP I C K       +
Sbjct: 145 FENALKLKQKANLLQILKNSGINPDDGFYNLDKITNAIKDGIGFTPGIECNKDPERNAQL 204

[Close]

BLAST of Cp4.1LG14g05080 vs. TAIR 10
Match: AT2G02990.1 (ribonuclease 1 )

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-15
Identity = 55/209 (26.32%), Postives = 89/209 (42.58%), Query Frame = 0


Query: 20  LVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTGKCCPANGCCRGADSPTEFT 79
           L L  + V+L +   +     +FD+F    QWP + C    KCC  N     AD    F 
Sbjct: 8   LCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAAD----FG 67

Query: 80  IHGLWPQYNERGWPSCC-------TDAISLLEEDIQKYWPTYRCGTTGNCHGTKGSFWAH 139
           IHGLWP Y +  +PS C       +  IS L   ++K WPT  C +     G+  +FW H
Sbjct: 68  IHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPS-----GSGEAFWEH 127

Query: 140 E-------------------------------KALSDAGFVASNTEKYALGDVVDAVKNA 187
           E                                AL+ AG +  + + Y+L  + D++K +
Sbjct: 128 EWEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAG-INPDGKSYSLESIRDSIKES 187

[Close]

BLAST of Cp4.1LG14g05080 vs. TAIR 10
Match: AT1G26820.1 (ribonuclease 3 )

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-14
Identity = 55/211 (26.07%), Postives = 82/211 (38.86%), Query Frame = 0


Query: 17  VFLLVLQLVAVVLAAETPSGGGQREFDYFVLALQWPATSCKNTGKCC-PANGCCRGADSP 76
           +F+L LQ + V   A+        +FD+F   LQWP   C +   CC P  G        
Sbjct: 5   IFILALQQLYVQSFAQ--------DFDFFYFVLQWPGAYCDSRHSCCYPQTG-----KPA 64

Query: 77  TEFTIHGLWPQYNERGWPSCCTD-------AISLLEEDIQKYWPTYRCGTTGNCHGTKGS 136
            +F IHGLWP Y   GWP  C          +S L  D+Q+ WPT  C +          
Sbjct: 65  ADFGIHGLWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGM-----K 124

Query: 137 FWAHE-------------------------------KALSDAGFVASNTEKYALGDVVDA 185
           FW HE                                AL++AG +  + + Y + D+ + 
Sbjct: 125 FWTHEWEKHGTCAESELDQHDYFEAGLKLKQKANLLHALTNAG-IKPDDKFYEMKDIENT 184

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g05080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42814	5.1e-51	43.16	Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1	[more]
P42813	2.3e-14	26.32	Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1	[more]
P42815	1.9e-13	26.07	Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1	[more]
P80196	2.5e-13	23.72	Intracellular ribonuclease LX OS=Solanum lycopersicum OX=4081 GN=RNALX PE=1 SV=2	[more]
P80022	8.9e-11	32.00	Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2	[more]

BLAST of Cp4.1LG14g05080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014875.1	8.61e-282	91.18	Ribonuclease 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023553229.1	3.33e-159	85.66	ribonuclease 2-like [Cucurbita pepo subsp. pepo]	[more]
KAE8649307.1	3.95e-156	53.13	hypothetical protein Csa_015411 [Cucumis sativus]	[more]
XP_022922895.1	1.67e-147	79.62	ribonuclease 2-like [Cucurbita moschata]	[more]
XP_022984766.1	1.03e-146	79.78	ribonuclease 2-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG14g05080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EA39	8.10e-148	79.62	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111430737 PE=3 SV=1	[more]
A0A6J1J670	5.00e-147	79.78	Ribonuclease T(2) OS=Cucurbita maxima OX=3661 GN=LOC111482949 PE=3 SV=1	[more]
A0A6J1CGP7	2.63e-115	64.55	Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111011504 PE=3 SV=1	[more]
A0A5A7V3T6	2.13e-113	63.06	Ribonuclease T(2) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00...	[more]
A0A1S3CHX1	4.58e-113	62.59	Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501148 PE=3 SV=1	[more]

BLAST of Cp4.1LG14g05080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39780.2	3.8e-57	50.00	ribonuclease 2	[more]
AT2G39780.1	3.6e-52	43.16	ribonuclease 2	[more]
AT1G14220.1	9.4e-16	27.57	Ribonuclease T2 family protein	[more]
AT2G02990.1	1.6e-15	26.32	ribonuclease 1	[more]
AT1G26820.1	1.4e-14	26.07	ribonuclease 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 293..389 e-value: 3.0E-21 score: 78.4 coord: 249..287 e-value: 5.8E-6 score: 28.4 coord: 134..209 e-value: 3.1E-17 score: 65.2 coord: 38..133 e-value: 1.5E-27 score: 98.9
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 41..206
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 252..386
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 298..372 e-value: 1.2E-7 score: 32.1 coord: 134..192 e-value: 2.4E-9 score: 37.6 coord: 42..133 e-value: 1.5E-13 score: 51.3
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 239..291
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 298..393
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 29..135
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 134..215
None	No IPR available	PANTHER	PTHR11240:SF66	OS01G0897300 PROTEIN	coord: 134..215
None	No IPR available	PANTHER	PTHR11240:SF66	OS01G0897300 PROTEIN	coord: 239..291
None	No IPR available	PANTHER	PTHR11240:SF66	OS01G0897300 PROTEIN	coord: 298..393
None	No IPR available	PANTHER	PTHR11240:SF66	OS01G0897300 PROTEIN	coord: 29..135
IPR018188	Ribonuclease T2, His active site 1	PROSITE	PS00530	RNASE_T2_1	coord: 78..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g05080.1	Cp4.1LG14g05080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding