Cp4.1LG14g04260 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g04260
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S16
Location	Cp4.1LG14: 1700281 .. 1700715 (+)
RNA-Seq Expression	Cp4.1LG14g04260
Synteny	Cp4.1LG14g04260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTTCGATCGAATCGGTGCAGTGTTTCGGACGCAAGAAGACGGCAGTAGCCGTTACCTACTGCAAGCGCGGCAGAGGTTTGATCAAGATCAATGGCTGTCCAATCGAACTGGTTGAGCCAGAGATCTTGCGCTTTAAGGCCTACGAGCCTATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCGCAGATCTACGCCATCCGACAGAGCATTGCCAAGGCTCTTGTTGCGTTCTACCAGAAATACGTGGACGAGCAGAGCAAAAAGGAGATTAAAGACATTCTGGTCAGGTATGATAGGACTTTGCTTGTTGCCGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGGGCTAGGTTCCAGAAATCATATCGTTGA

mRNA sequence

ATGGCGGCTTCGATCGAATCGGTGCAGTGTTTCGGACGCAAGAAGACGGCAGTAGCCGTTACCTACTGCAAGCGCGGCAGAGGTTTGATCAAGATCAATGGCTGTCCAATCGAACTGGTTGAGCCAGAGATCTTGCGCTTTAAGGCCTACGAGCCTATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCGCAGATCTACGCCATCCGACAGAGCATTGCCAAGGCTCTTGTTGCGTTCTACCAGAAATACGTGGACGAGCAGAGCAAAAAGGAGATTAAAGACATTCTGGTCAGGTATGATAGGACTTTGCTTGTTGCCGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGGGCTAGGTTCCAGAAATCATATCGTTGA

Coding sequence (CDS)

ATGGCGGCTTCGATCGAATCGGTGCAGTGTTTCGGACGCAAGAAGACGGCAGTAGCCGTTACCTACTGCAAGCGCGGCAGAGGTTTGATCAAGATCAATGGCTGTCCAATCGAACTGGTTGAGCCAGAGATCTTGCGCTTTAAGGCCTACGAGCCTATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCGCAGATCTACGCCATCCGACAGAGCATTGCCAAGGCTCTTGTTGCGTTCTACCAGAAATACGTGGACGAGCAGAGCAAAAAGGAGATTAAAGACATTCTGGTCAGGTATGATAGGACTTTGCTTGTTGCCGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGGGCTAGGTTCCAGAAATCATATCGTTGA

Protein sequence

MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR

Homology

[Close]

BLAST of Cp4.1LG14g04260 vs. ExPASy Swiss-Prot
Match: P46293 (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.3e-72
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 4   SIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSG 63
           +IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+G
Sbjct: 5   AIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTG 64

Query: 64  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPR 123
           VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPR
Sbjct: 65  VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPR 124

Query: 124 RCEPKKFGGRGARARFQKSYR 145
           RCEPKKFGGRGARARFQKSYR
Sbjct: 125 RCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of Cp4.1LG14g04260 vs. ExPASy Swiss-Prot
Match: Q9SK22 (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-68
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Cp4.1LG14g04260 vs. ExPASy Swiss-Prot
Match: Q42340 (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-68
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Cp4.1LG14g04260 vs. ExPASy Swiss-Prot
Match: O22647 (40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.7e-68
Identity = 125/139 (89.93%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVD
Sbjct: 7   ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVD 66

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRC
Sbjct: 67  MRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRC 126

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+RFQKSYR
Sbjct: 127 EPKKFGGRGARSRFQKSYR 145

[Close]

BLAST of Cp4.1LG14g04260 vs. ExPASy Swiss-Prot
Match: Q9XEK7 (40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.4e-66
Identity = 122/142 (85.92%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 3   ASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A++ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARARFQKSYR 145
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

[Close]

BLAST of Cp4.1LG14g04260 vs. NCBI nr
Match: XP_022922707.1 (40S ribosomal protein S16 [Cucurbita moschata] >XP_022983252.1 40S ribosomal protein S16 [Cucurbita maxima] >XP_022984711.1 40S ribosomal protein S16 [Cucurbita maxima] >XP_023529226.1 40S ribosomal protein S16 [Cucurbita pepo subsp. pepo] >XP_023533765.1 40S ribosomal protein S16 [Cucurbita pepo subsp. pepo] >XP_023552530.1 40S ribosomal protein S16 [Cucurbita pepo subsp. pepo] >KAG6576948.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031001.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6600346.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289 bits (740), Expect = 1.53e-98
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. NCBI nr
Match: XP_022942745.1 (40S ribosomal protein S16-like [Cucurbita moschata])

HSP 1 Score: 288 bits (738), Expect = 3.09e-98
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAASIESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. NCBI nr
Match: XP_004136973.1 (40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protein S16 [Cucumis sativus] >XP_004149967.1 40S ribosomal protein S16 [Cucumis sativus] >XP_008454961.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456099.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456141.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_022136342.1 40S ribosomal protein S16 [Momordica charantia] >XP_022149129.1 40S ribosomal protein S16 [Momordica charantia] >XP_022927908.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943042.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943043.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022952362.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022972375.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_022983243.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_023535994.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_023553863.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_038877987.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038880326.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038886975.1 40S ribosomal protein S16 [Benincasa hispida] >KAA0031306.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAG6571970.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011649.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAA0037136.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAA0039084.1 40S ribosomal protein S16 [Cucumis melo var. makuwa])

HSP 1 Score: 287 bits (735), Expect = 8.87e-98
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. NCBI nr
Match: XP_022149351.1 (40S ribosomal protein S16-like [Momordica charantia])

HSP 1 Score: 287 bits (734), Expect = 1.26e-97
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. NCBI nr
Match: XP_022989000.1 (40S ribosomal protein S16-like [Cucurbita maxima])

HSP 1 Score: 286 bits (732), Expect = 2.54e-97
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MA+ IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MASPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. ExPASy TrEMBL
Match: A0A6J1IYS6 (40S ribosomal protein S16 OS=Cucurbita maxima OX=3661 GN=LOC111481885 PE=3 SV=1)

HSP 1 Score: 289 bits (740), Expect = 7.42e-99
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. ExPASy TrEMBL
Match: A0A6J1E429 (40S ribosomal protein S16 OS=Cucurbita moschata OX=3662 GN=LOC111430621 PE=3 SV=1)

HSP 1 Score: 289 bits (740), Expect = 7.42e-99
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. ExPASy TrEMBL
Match: A0A6J1FWV0 (40S ribosomal protein S16-like OS=Cucurbita moschata OX=3662 GN=LOC111447690 PE=3 SV=1)

HSP 1 Score: 288 bits (738), Expect = 1.50e-98
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAASIESVQCFGRKKTAVAVTYCKRGRG+IKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGIIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. ExPASy TrEMBL
Match: A0A6J1J781 (40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 SV=1)

HSP 1 Score: 287 bits (735), Expect = 4.29e-98
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. ExPASy TrEMBL
Match: A0A0A0L6F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 287 bits (735), Expect = 4.29e-98
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAASIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAA IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of Cp4.1LG14g04260 vs. TAIR 10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-69
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Cp4.1LG14g04260 vs. TAIR 10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-69
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of Cp4.1LG14g04260 vs. TAIR 10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-65
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

[Close]

BLAST of Cp4.1LG14g04260 vs. TAIR 10
Match: AT5G18380.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-59
Identity = 108/125 (86.40%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKF 131
           E  +F
Sbjct: 128 ELFRF 132

[Close]

BLAST of Cp4.1LG14g04260 vs. TAIR 10
Match: AT5G18380.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 197.6 bits (501), Expect = 6.9e-51
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVR+
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRF 115

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g04260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46293	5.3e-72	95.74	40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1	[more]
Q9SK22	1.6e-68	89.21	40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1	[more]
Q42340	2.1e-68	88.49	40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1	[more]
O22647	2.7e-68	89.93	40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1	[more]
Q9XEK7	7.4e-66	85.92	40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1	[more]

BLAST of Cp4.1LG14g04260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922707.1	1.53e-98	100.00	40S ribosomal protein S16 [Cucurbita moschata] >XP_022983252.1 40S ribosomal pro...	[more]
XP_022942745.1	3.09e-98	99.31	40S ribosomal protein S16-like [Cucurbita moschata]	[more]
XP_004136973.1	8.87e-98	99.31	40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protei...	[more]
XP_022149351.1	1.26e-97	98.61	40S ribosomal protein S16-like [Momordica charantia]	[more]
XP_022989000.1	2.54e-97	98.61	40S ribosomal protein S16-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG14g04260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IYS6	7.42e-99	100.00	40S ribosomal protein S16 OS=Cucurbita maxima OX=3661 GN=LOC111481885 PE=3 SV=1	[more]
A0A6J1E429	7.42e-99	100.00	40S ribosomal protein S16 OS=Cucurbita moschata OX=3662 GN=LOC111430621 PE=3 SV=...	[more]
A0A6J1FWV0	1.50e-98	99.31	40S ribosomal protein S16-like OS=Cucurbita moschata OX=3662 GN=LOC111447690 PE=...	[more]
A0A6J1J781	4.29e-98	99.31	40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 ...	[more]
A0A0A0L6F6	4.29e-98	99.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1	[more]

BLAST of Cp4.1LG14g04260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G09990.1	1.1e-69	89.21	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.1	1.5e-69	88.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G04230.1	1.3e-65	84.89	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.2	1.1e-59	86.40	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.3	6.9e-51	86.11	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 2..144 e-value: 1.7E-54 score: 185.9
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 12..144 e-value: 2.6E-31 score: 108.7
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 4..144
None	No IPR available	PANTHER	PTHR21569:SF28	SUBFAMILY NOT NAMED	coord: 4..144
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 72..90
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 7..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g04260.1	Cp4.1LG14g04260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome