Cp4.1LG14g03350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g03350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	glycine-rich protein 5-like
Location	Cp4.1LG14: 2318134 .. 2318520 (-)
RNA-Seq Expression	Cp4.1LG14g03350
Synteny	Cp4.1LG14g03350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACTTACGCCATTGTTCTTATAACATGCGGGTGTGTGATAGCGAGTGCAGTGATTTTATGGTGTGTTTGTAGCTATGGAGGCCGTAAGAAGAAGAAAGCAGCGCCACCCACGTACACATCTAGTGCTCTTAGGCCAACGCCAAGGCCAAGCCGTGACCTTGAACTTGGGGAAGCTAAGAATGGTGGGATGACTATTCTTGCTGGGGCTGCTGCTGGCTTAGCTACTGCAGCTGTGGTTACCAGTTTAAGCAATGATGGTGGTGGAGGAGGAGGAGGAGAGGAAGGGGGAGGTGATGGTGGCGGTGGTGATGGCGGTGGTGGTTGTGGAGGTGGATGTGGTGGGGGCTGTGGCGGTGGTTGTGGTGGTGGCTGTGGTGGTTGA

mRNA sequence

ATGAGAACTTACGCCATTGTTCTTATAACATGCGGGTGTGTGATAGCGAGTGCAGTGATTTTATGGTGTGTTTGTAGCTATGGAGGCCGTAAGAAGAAGAAAGCAGCGCCACCCACGTACACATCTAGTGCTCTTAGGCCAACGCCAAGGCCAAGCCGTGACCTTGAACTTGGGGAAGCTAAGAATGGTGGGATGACTATTCTTGCTGGGGCTGCTGCTGGCTTAGCTACTGCAGCTGTGGTTACCAGTTTAAGCAATGATGGTGGTGGAGGAGGAGGAGGAGAGGAAGGGGGAGGTGATGGTGGCGGTGGTGATGGCGGTGGTGGTTGTGGAGGTGGATGTGGTGGGGGCTGTGGCGGTGGTTGTGGTGGTGGCTGTGGTGGTTGA

Coding sequence (CDS)

ATGAGAACTTACGCCATTGTTCTTATAACATGCGGGTGTGTGATAGCGAGTGCAGTGATTTTATGGTGTGTTTGTAGCTATGGAGGCCGTAAGAAGAAGAAAGCAGCGCCACCCACGTACACATCTAGTGCTCTTAGGCCAACGCCAAGGCCAAGCCGTGACCTTGAACTTGGGGAAGCTAAGAATGGTGGGATGACTATTCTTGCTGGGGCTGCTGCTGGCTTAGCTACTGCAGCTGTGGTTACCAGTTTAAGCAATGATGGTGGTGGAGGAGGAGGAGGAGAGGAAGGGGGAGGTGATGGTGGCGGTGGTGATGGCGGTGGTGGTTGTGGAGGTGGATGTGGTGGGGGCTGTGGCGGTGGTTGTGGTGGTGGCTGTGGTGGTTGA

Protein sequence

MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEAKNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGGGCGGGCGGGCGG

Homology

[Close]

BLAST of Cp4.1LG14g03350 vs. NCBI nr
Match: XP_023552868.1 (glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207 bits (526), Expect = 2.01e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGGGCGG 120
           KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGGGCGG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGGGCGG 120

Query: 121 GCGGGCGG 128
           GCGGGCGG
Sbjct: 121 GCGGGCGG 128

[Close]

BLAST of Cp4.1LG14g03350 vs. NCBI nr
Match: XP_022931328.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 199 bits (505), Expect = 3.29e-63
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGG-EEGGGDGGGGDGGGGCGGGCGGGCG 120
           KNGGMTILAGAAAGLATAAVVTSL+NDGGGGGGG EEGGGDG GGDGGGGCGGGCGGGCG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGCGGGCG 120

Query: 121 GGCGGGCGG 128
           GGCGGGCGG
Sbjct: 121 GGCGGGCGG 129

[Close]

BLAST of Cp4.1LG14g03350 vs. NCBI nr
Match: XP_022985127.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 196 bits (498), Expect = 3.71e-62
Identity = 124/128 (96.88%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLIT GCVIASAVILWCVCSYGGRKKKK APPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGGGCGG 120
           KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGG EGG DGGGGDGGGGCGGGCGGGCGG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGGGCGG 120

Query: 121 GCGGGCGG 128
           GCGGGCGG
Sbjct: 121 GCGGGCGG 128

[Close]

BLAST of Cp4.1LG14g03350 vs. NCBI nr
Match: KAG6577050.1 (hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192 bits (487), Expect = 1.71e-60
Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGG---EEGGGDGGGGDGGGGCGGGCGGG 120
           KNGGMTILAGAAAGLATAAVVTSL+NDGGGGGGG   EEGGGDGGGG    GCGGGCGGG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGG----GCGGGCGGG 120

Query: 121 CGGGCGGGCGG 128
           CGGGCGGGCGG
Sbjct: 121 CGGGCGGGCGG 127

[Close]

BLAST of Cp4.1LG14g03350 vs. NCBI nr
Match: KGN53550.1 (hypothetical protein Csa_015259 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 5.62e-23
Identity = 83/131 (63.36%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           M+TYAIVLI  G VI + +ILWCVC +G  +KKK    T T +  + TP+ + D+E G+ 
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKK----TITYNMPKRTPQRNLDIERGQL 60

Query: 61  ----KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGG 120
                NGGMTIL GAAAGLATAAVVT+LS+ GGGGGG    GGDG GG GGGGCGGGCGG
Sbjct: 61  PKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGG-GGGGCGGGCGG 120

Query: 121 GCGGGCGGGCG 127
            CGGGCGGGCG
Sbjct: 121 -CGGGCGGGCG 125

[Close]

BLAST of Cp4.1LG14g03350 vs. ExPASy TrEMBL
Match: A0A6J1EY84 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 SV=1)

HSP 1 Score: 199 bits (505), Expect = 1.59e-63
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGG-EEGGGDGGGGDGGGGCGGGCGGGCG 120
           KNGGMTILAGAAAGLATAAVVTSL+NDGGGGGGG EEGGGDG GGDGGGGCGGGCGGGCG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGCGGGCG 120

Query: 121 GGCGGGCGG 128
           GGCGGGCGG
Sbjct: 121 GGCGGGCGG 129

[Close]

BLAST of Cp4.1LG14g03350 vs. ExPASy TrEMBL
Match: A0A6J1J409 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 1.80e-62
Identity = 124/128 (96.88%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           MRTYAIVLIT GCVIASAVILWCVCSYGGRKKKK APPTYTSSALRPTPRPSRDLELGEA
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGGGCGG 120
           KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGG EGG DGGGGDGGGGCGGGCGGGCGG
Sbjct: 61  KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGGGCGG 120

Query: 121 GCGGGCGG 128
           GCGGGCGG
Sbjct: 121 GCGGGCGG 128

[Close]

BLAST of Cp4.1LG14g03350 vs. ExPASy TrEMBL
Match: A0A0A0KVE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.72e-23
Identity = 83/131 (63.36%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60
           M+TYAIVLI  G VI + +ILWCVC +G  +KKK    T T +  + TP+ + D+E G+ 
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKK----TITYNMPKRTPQRNLDIERGQL 60

Query: 61  ----KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGG 120
                NGGMTIL GAAAGLATAAVVT+LS+ GGGGGG    GGDG GG GGGGCGGGCGG
Sbjct: 61  PKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGG-GGGGCGGGCGG 120

Query: 121 GCGGGCGGGCG 127
            CGGGCGGGCG
Sbjct: 121 -CGGGCGGGCG 125

[Close]

BLAST of Cp4.1LG14g03350 vs. ExPASy TrEMBL
Match: A0A6J1CN85 (glycine-rich cell wall structural protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012824 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.57e-14
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 27  YGGRKKKKAAPPTYTSSALRPTP-RPSRDLELG--EAKNGGMTILAGAAAGLATAAVVTS 86
           +GGRKKK+ +         RP P +  RD+E+G  E K+GGM ILAG  AGLATAAVVTS
Sbjct: 21  FGGRKKKEVS--------TRPQPPKAYRDVEIGRSETKDGGMAILAGVGAGLATAAVVTS 80

Query: 87  LSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGGGCGGGCGG 124
           LS+ GG GGGG++GGGDGG G G GGCGGGCGGGCGGGCGG
Sbjct: 81  LSSGGGDGGGGDDGGGDGGDGGGCGGCGGGCGGGCGGGCGG 113

[Close]

BLAST of Cp4.1LG14g03350 vs. ExPASy TrEMBL
Match: A0A2P5BBV5 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252870 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.04e-12
Identity = 68/133 (51.13%), Postives = 78/133 (58.65%), Query Frame = 0


Query: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPT---------YTSSALRPTPRP 60
           M+ YAI L+ CG VIA+ +IL C+CS G  KKK+   P           T SA RP P  
Sbjct: 1   MKAYAIALVACGSVIAAVIILVCLCSRGNNKKKQTRTPNPIRMQSLSGTTPSAQRPYPA- 60

Query: 61  SRDLELGEA-------KNGGMTILAGAAAGLATAAVVTSLSND--GGGGGGGEEGGGDG- 112
             D+E GE        K+GGM ILAGA A L T A V S+S+   GGGGGGG  GGGDG 
Sbjct: 61  GPDIERGEGTMKSSGTKDGGMVILAGAGATLVTTAAVASISSGCGGGGGGGGGGGGGDGD 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g03350 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g03350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552868.1	2.01e-66	100.00	glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022931328.1	3.29e-63	97.67	glycine-rich protein 5-like [Cucurbita moschata]	[more]
XP_022985127.1	3.71e-62	96.88	glycine-rich protein 5-like [Cucurbita maxima]	[more]
KAG6577050.1	1.71e-60	93.89	hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN53550.1	5.62e-23	63.36	hypothetical protein Csa_015259 [Cucumis sativus]	[more]

BLAST of Cp4.1LG14g03350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EY84	1.59e-63	97.67	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 S...	[more]
A0A6J1J409	1.80e-62	96.88	glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=...	[more]
A0A0A0KVE1	2.72e-23	63.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1	[more]
A0A6J1CN85	1.57e-14	65.35	glycine-rich cell wall structural protein 1-like OS=Momordica charantia OX=3673 ...	[more]
A0A2P5BBV5	1.04e-12	51.13	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_252870 PE...	[more]

BLAST of Cp4.1LG14g03350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g03350.1	Cp4.1LG14g03350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane