Cp4.1LG14g02340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g02340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG14: 3122053 .. 3122860 (+)
RNA-Seq Expression	Cp4.1LG14g02340
Synteny	Cp4.1LG14g02340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTATTTTTTATTTTTTATTTTATGAAAGAACTTAATAAAGAATGTAATAAGGGGTCGACGGGACCCCGTCCGGCCGTCCCTATGCACCTTGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCCGCCCTCTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCGCAGAAGAAATCTGTGTTGTATTTCGTCCTCTTCGCTGCCTTTCGTCTGTGTTGATCCGGACATGATGTTCACAGGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGTAATTTCTTTGGTTCTTGGTTGTTCTTCTCTTTTTTGTTCTTGTTGGTTGCTCTGCTGCTGAAGAAATGGGGAAATTTTTACCAAATTAGTTGTGTGTATTTTTTTGCTTTGAATTATTAGCTCAGTTTTGTTGTTGATTTAGGGCGGTGTTCTTCTTCACTGTGTTGTTGATTGATGAAATTTTGAGTGCTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTTCTCCATCATCTGTTTTTATTAAAGAAGCTGTAAGTGGTTATGTATGTGGTAGCAAATTCTTGCGCACTTACCAAATTTTGCTTTGTTTATATATGAGTCATGTCCTCTTTGACTTCACTTATTTAAATTGAGCCACTTGGTACACTGTACAGATGATCTATGTGCTTGCATACTTGATGTCACGATATCTTTTATTCTTGCATATTGCTCTCTTTAGGGAGTCCCTCAATAG

mRNA sequence

GTTTTTATTTTTTATTTTTTATTTTATGAAAGAACTTAATAAAGAATGTAATAAGGGGTCGACGGGACCCCGTCCGGCCGTCCCTATGCACCTTGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCCGCCCTCTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCGCAGAAGAAATCTGTGTTGTATTTCGTCCTCTTCGCTGCCTTTCGTCTGTGTTGATCCGGACATGATGTTCACAGGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGGCGGTGTTCTTCTTCACTGTGTTGTTGATTGATGAAATTTTGAGTGCTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTTCTCCATCATCTGTTTTTATTAAAGAAGCTGTAAGTGGTTATGGAGTCCCTCAATAG

Coding sequence (CDS)

ATGAAAGAACTTAATAAAGAATGTAATAAGGGGTCGACGGGACCCCGTCCGGCCGTCCCTATGCACCTTGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCCGCCCTCTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCGCAGAAGAAATCTGTGTTGTATTTCGTCCTCTTCGCTGCCTTTCGTCTGTGTTGATCCGGACATGATGTTCACAGGTTGGAGCCTGGGTATCCATTGA

Protein sequence

MKELNKECNKGSTGPRPAVPMHLDGANSTTNLSLSASFPLSMAVPALFFVSPTDPFFFRRRNLCCISSSSLPFVCVDPDMMFTGWSLGIH

Homology

[Close]

BLAST of Cp4.1LG14g02340 vs. NCBI nr
Match: KAG7015175.1 (hypothetical protein SDJN02_22808 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (442), Expect = 8.18e-55
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MKELNKECNKGSTGPRPAVPMHLDGANSTTNLSLSASFPLSMAVPALFFVSPTDPFFFRR 60
          M+ELNK CNK S GPRPAVP+HLDGANSTTNLSLSASFPLSMAVPALFFVSPTDPFFFRR
Sbjct: 1  MEELNKACNKASMGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVSPTDPFFFRR 60

Query: 61 RNLCCISSSSLPFVCVDPDMMFTGWSLGIH 90
          RNL C SSSSLPFVCVDPDM+FTGWSLGIH
Sbjct: 61 RNLWCFSSSSLPFVCVDPDMIFTGWSLGIH 90

[Close]

BLAST of Cp4.1LG14g02340 vs. NCBI nr
Match: KAG6577178.1 (hypothetical protein SDJN03_24752, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 5.23e-15
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 14 GPRPAVPMHLDGANSTTNLSLSASFPLSMAVPALFFV 50
          GPRPAVP+HLDGANSTTNLSLSASFPLSMAVPALFFV
Sbjct: 2  GPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFV 38

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g02340 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g02340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015175.1	8.18e-55	91.11	hypothetical protein SDJN02_22808 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6577178.1	5.23e-15	97.30	hypothetical protein SDJN03_24752, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG14g02340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g02340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g02340.1	Cp4.1LG14g02340.1	mRNA