Cp4.1LG14g02010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g02010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG14: 3341637 .. 3344766 (+)
RNA-Seq Expression	Cp4.1LG14g02010
Synteny	Cp4.1LG14g02010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATATGTAAATGTTGAGTTCAAAGCGACGGTTGATAGCATCTATATCAGGTGTGTATGTTTCGTACTAGATTACACTCGCGATCTTAAGTTTATTTTTGAAGAGTTGAGTTCTTGGATTTTTGATTTTGTTGCATTTGTTTTCAAGAATTATAAGCTAGGTTAGGTTGATTGTTGCATTGCCTGAAGCTTTGGGAGGTTCGACGGATGAATGAATCCATTACGAATCGCATGTTTTTCAGAGGAATCATAGTTACTTGATGATTAATCAGATTCAATGATTTGCGACATTACTGAAGATTCTTCCATTATATGTTATTGTGTGTATTTGTTGTAGTGGATGAATGTTACCAGATGGGAGATGCGGCGAAACCATTTGGTAGAACTCTTTGATTTCTTTTGCAGGCGTGTCATACTGCTCAAGCCAGTCCGGAAGAGGCAGAACAAGTGATTCATTGATGCATTCAGATGATTAGCACAGGTACAAATTTTGATTATGAGCAAGTCGGATTATTGCCTATTATTCCAATATAATTGCTTAGATCATCTTGAGTTCAATACAATTATAGAGAGATGTGGAAAGAGCACCATCCAATTGAGTGGGCTGGTTTTTCGTTTATGGAAAAGCTAAAATGGGGGAAACTAGAAGACTAATGAAACTTATATCTCTTTTATCCCTGAGAAGTCAAGTGCAACTAAAATGGGGGAGTTTAGACTCGTTAGCCAAGACGAACCCCTCTCCCCTTTCTTGTTCGCTTCTATAACTAATGTTTTCTGCAGCATTGTGGAGGTTTGTAAAGAAAAATGCATTATCGAAGGCTTTGAAATAGGTGGAGAGGGTCAAAATTTCTACAGATGATACTGTCTTGTTTTGCAAATATGAACATATTAAGCTAGAAATGTAACGATCCTAAGCCTATCACTAGTAGATATTTTCCTCTTTAGGCTTTCTTTTTTGGGCTTCCCCTCAAAGTTTTTAAAGCGCGTCTGGTAGAGAGAGGTTTCTACACCCTTATAAAGAATACTTCGTTCTCCTCCCTAATTGATGTAAGATCTCACAATCCACCCCCTTTGGGGCCAGTGTCCTCGCTGACACTTGTTCTCCTCTCTAATCGATGTGGGACCTCATAATCCACCCTTTTTCGGGGCCCAACGTCTTCGCTGGCACTCATTCTCTTCTCCAATTGATGTGGGGAAAGATTTAGCTTAGTAAATGCAGTACTCACAAGCACCCCTATTTATTACCTCTCCATGTTTCGTGTTGCGAGCTAGGCCAGCAAAAACCGAGACAAAACCATTAGAAATTTTCTATGAGAAGGAGCAAATAATGAAGGGGGTAGCTACCTAGTGAATTTGGCAAAAGTCATTGCTCCTTTGTTCTTGGGATGTCTCAGCATCGGCAACGTTGGAAAGAAAAATGCTGCTATTTCAGTGGCTTTGGCATTACACATAAAAAGGAACTGCTCTATGGAAAAGCATTATTAGAAGCAAATATGATCACAAGGGCCCTTCATAGCTAGATTCTTCCCAAACTAAATGGATTTGGAAGGAACACAGCCCCAAGAAGGTACTTTTTTTTTGTTTGTTAGTTGGCTCATTGTAGTCTCAACACCACGGACAGGGTTCAATGGACAAATTTCATGTGACAGCTCGAGTCCACCGCTAGTATATATTGTCCTCTTTGGGCTTTCCTTCATAGTTTTTAAAACGTGTCTGTTAGAGAGAGGTTTCCAAACCCATATAAAGAATGTTTTGTTCTCCTCTCGATCCCTATTTTGTTTCCCTCTCCAACCAATGTGTGATCAAGAGGAGAACAAAACATTCTTTATAAGGGTGTAGAAACCTCTCCGGAGTAGACGCGTTTTAAAAACTTTGAGGAGAAGCCTTAAAGGAAAAACCCGAAGAGGACAATATTTGCTAGCGGTGGCCTTGGACTGTTACATCCCAACTGTGTTTTATCAACAAATATTTGTTTGATGTGCAAAAAGGAGCGAAGAAACTAGCAGCCACTTATTTCTCCACTATTTATTCACTTACAAAGCTTGGATTTTTATCCTAAAACGCCTAGACGTAGCTTGGTGTCTTCCAAGATGTAGTTGAAGACGGCCTTTCAGAATTAATCTCCGGTGGATGGCTCAAAGGCAGGGGTTGAGTAATGTGGTCAACCGTGGATACATCTTTCTTTTGGAAAAACATCATTGATTATGCAACAAAAAAAAAAAAAAAAAAAAAAANTTGATTAATAATAGAAATGAGTACCATTGTACCAGTTTGAACATTACAGGTTTAAGCATTTACCCTCGACAAGGAGGTCGGAGGCTTCGACCCTCCAACTCCACACGTTGAATAAAAAAAGAATAGAAAGGAAGCAATTTGGCATGTCATTTGTCTTGGGCATTTGAATGCAGGGTAGCAAGGAATTGCTTGAGACACCTATTGTAGACGCAAGGTCGTTCCAAGTGAACCAAGTGACCCGACTTCGGTATGCTTTGAAACGTTGCATTGTCGCCGAGGTCCCTACATTTAGCATGATTCAAAACAGAACTTAGGATTCCATTTCAAATGAATCCTTAGTTAACTTTTAATGGAATGAAATGATACGTACTCTTGTAGTTTTCGGGCAAGCTCGACGTTGAAAATCTGATCATTTAGGCCCCATAAAAGATGTATCTTCTGCAAAGAGATGGATGAAGAATCATAAGCAGTCTTCCAAGTGAAAGAATTAAAGTGGGGAGTGAAGATGGGAAGAAGAGAGTGCCTGAGGGAACTTAGGCACAGTGCTGTCTTTGTTACTCATAACTAAGCCTTCAAGCAGCTCTGCCCTGTCCTTCCTGTTATTGAACATCACCTGCAATTGTTCAAATATAAAGCTAATTTGTTAGCTGGGTTTAGGGGTATACAAGATCGGGTTAGATTGGGTTGAGGAATTTTTTTGGACCAACCCAAAAGTTTGGGTTGGTTGGATTGGTAACAACCTAACCCGAAAAATTTCACAATCCAGCTCAATCCTCTATTTTTGGATGGTTCCGAAAAGAAAAGTTAAAAAATTTAATTGGTATCTCCTAAAATACTTAAACAATTACCATCTATAAACTTCTAGTTTAAAAGTATCCGATAAAAGTATAAGATGG

mRNA sequence

GAATATGTAAATGTTGAGTTCAAAGCGACGGTTGATAGCATCTATATCAGGTGTGTATGTTTCGTACTAGATTACACTCGCGATCTTAAGTTTATTTTTGAAGAGTTGAGTTCTTGGATTTTTGATTTTGTTGCATTTGTTTTCAAGAATTATAAGCTAGTGGATGAATGTTACCAGATGGGAGATGCGGCGAAACCATTTGGTAGAACTCTTTGATTTCTTTTGCAGGCGTGTCATACTGCTCAAGCCAGTCCGGAAGAGGCAGAACAAGTGATTCATTGATGCATTCAGATGATTAGCACAGGGTAGCAAGGAATTGCTTGAGACACCTATTGTAGACGCAAGGTCGTTCCAAGTGAACCAAGTGACCCGACTTCGTTTTCGGGCAAGCTCGACGTTGAAAATCTGATCATTTAGGCCCCATAAAAGATGTATCTTCTGCAAAGAGATGGATGAAGAATCATAAGCAGTCTTCCAAGTGAAAGAATTAAAGTGGGGAGTGAAGATGGGAAGAAGAGAGTGCCTGAGGGAACTTAGGCACAGTGCTGTCTTTGTTACTCATAACTAAGCCTTCAAGCAGCTCTGCCCTGTCCTTCCTGTTATTGAACATCACCTGCAATTGTTCAAATATAAAGCTAATTTGTTAGCTGGGTTTAGGGGTATACAAGATCGGGTTAGATTGGGTTGAGGAATTTTTTTGGACCAACCCAAAAGTTTGGGTTGGTTGGATTGGTAACAACCTAACCCGAAAAATTTCACAATCCAGCTCAATCCTCTATTTTTGGATGGTTCCGAAAAGAAAAGTTAAAAAATTTAATTGGTATCTCCTAAAATACTTAAACAATTACCATCTATAAACTTCTAGTTTAAAAGTATCCGATAAAAGTATAAGATGG

Coding sequence (CDS)

GAATATGTAAATGTTGAGTTCAAAGCGACGGTTGATAGCATCTATATCAGGTGTGTATGTTTCGTACTAGATTACACTCGCGATCTTAAGTTTATTTTTGAAGAGTTGAGTTCTTGGATTTTTGATTTTGTTGCATTTGTTTTCAAGAATTATAAGCTAGTGGATGAATGTTACCAGATGGGAGATGCGGCGAAACCATTTGGTAGAACTCTTTGA

Protein sequence

EYVNVEFKATVDSIYIRCVCFVLDYTRDLKFIFEELSSWIFDFVAFVFKNYKLVDECYQMGDAAKPFGRTL

Homology

[Close]

BLAST of Cp4.1LG14g02010 vs. NCBI nr
Match: KAG7015311.1 (hypothetical protein SDJN02_22946, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.7 bits (130), Expect = 1.54e-07
Identity = 34/71 (47.89%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 1  EYVNVEFKATVDSIYIRCVCFVLDYTRDLKFIFEELSSWIFDFVAFVFKNYKLVDECYQM 60
          EYVNVE KATV+SIYIR +  +           E L                 VDECY+M
Sbjct: 55 EYVNVEVKATVNSIYIRLIVALP----------EALG----------------VDECYKM 99

Query: 61 GDAAKPFGRTL 71
          GDAAKPFGRTL
Sbjct: 115 GDAAKPFGRTL 99

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g02010 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g02010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015311.1	1.54e-07	47.89	hypothetical protein SDJN02_22946, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG14g02010 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g02010 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g02010.1	Cp4.1LG14g02010.1	mRNA