Cp4.1LG14g01430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g01430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	nuclear transcription factor Y subunit B-like
Location	Cp4.1LG14: 3617342 .. 3617935 (-)
RNA-Seq Expression	Cp4.1LG14g01430
Synteny	Cp4.1LG14g01430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAAGCGAAACCTCACAACCACCGTCAGCCCCGTCGGCAGCCCAACCTCCGACAACATATCCGACAGCACCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCCAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCCGTCACCGACGAAATCCGCCGCCGCCGCCACCGCCGCCGTGGAACAGATAATCGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTGGGGAATCATAAGAGTTTGAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGGTAAATATGAGTGGAGTCCCTGA

mRNA sequence

ATGCACAAGCGAAACCTCACAACCACCGTCAGCCCCGTCGGCAGCCCAACCTCCGACAACATATCCGACAGCACCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCCAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCCGTCACCGACGAAATCCGCCGCCGCCGCCACCGCCGCCGTGGAACAGATAATCGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTGGGGAATCATAAGAGTTTGAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGGTAAATATGAGTGGAGTCCCTGA

Coding sequence (CDS)

ATGCACAAGCGAAACCTCACAACCACCGTCAGCCCCGTCGGCAGCCCAACCTCCGACAACATATCCGACAGCACCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCCAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCCGTCACCGACGAAATCCGCCGCCGCCGCCACCGCCGCCGTGGAACAGATAATCGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTGGGGAATCATAAGAGTTTGAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGGTAAATATGAGTGGAGTCCCTGA

Protein sequence

MHKRNLTTTVSPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNHKSLNIIDGVGFGESLRGKYEWSP

Homology

[Close]

BLAST of Cp4.1LG14g01430 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-45
Identity = 99/142 (69.72%), Postives = 104/142 (73.24%), Query Frame = 0


Query: 10  VSPVGSPTSDNIS-----------------------------DSTTKEQDRFLPIANVSR 69
           +SPVGSP  DN S                             DS  KEQDRFLPIANVSR
Sbjct: 11  LSPVGSPPLDNESGEAAAAAAAGGGGCGSSAGYVVYGGGGGGDSPAKEQDRFLPIANVSR 70

Query: 70  IMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 123
           IMK+SLPANAKISKE+KETVQECVSEFISF+TGEASDKCQREKRKTINGDDLLWAMTTLG
Sbjct: 71  IMKRSLPANAKISKESKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLG 130

[Close]

BLAST of Cp4.1LG14g01430 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-44
Identity = 95/131 (72.52%), Postives = 107/131 (81.68%), Query Frame = 0


Query: 23  DSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 82
           +++T+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 83  KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQDDPSPSPTKSAAA 142
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D         A 
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDKEGGGGGGGAG 135

Query: 143 ATAAVEQIIGG 153
           + +    + GG
Sbjct: 136 SGSGGAPMYGG 146

[Close]

BLAST of Cp4.1LG14g01430 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.0e-43
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 16  PTSDNISD--------STTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEF 75
           P SDN S         ++ +EQDRFLPIANVSRIMK++LPANAKISK+AKETVQECVSEF
Sbjct: 2   PDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEF 61

Query: 76  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEK 123
           ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+Y+ PLK+YL+K+RE E EK
Sbjct: 62  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116

[Close]

BLAST of Cp4.1LG14g01430 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.2e-43
Identity = 87/116 (75.00%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 14  GSPTS-DNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 73
           GSP+S  N +++  KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 74  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQ 129
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of Cp4.1LG14g01430 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-42
Identity = 84/106 (79.25%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 22  SDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQR 81
           S  + +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 82  EKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLAR 128
           EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126

[Close]

BLAST of Cp4.1LG14g01430 vs. NCBI nr
Match: KAG6577262.1 (Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 373 bits (958), Expect = 4.20e-130
Identity = 192/197 (97.46%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MHKRNLTTTVSPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 60
           MHKRNLTTTVSPVGSPTSDNISDS+TKEQDRFLPIANVSRIMKKSLPANAKISKEAKETV
Sbjct: 1   MHKRNLTTTVSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 60

Query: 61  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEE 120
           QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEE
Sbjct: 61  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEE 120

Query: 121 EKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNHKSLNII 180
           EKHSLARQDDPSPSPTKSAAA    VEQIIGGKSANSVMDFQNLNSGFYSLGNHKSLNII
Sbjct: 121 EKHSLARQDDPSPSPTKSAAA----VEQIIGGKSANSVMDFQNLNSGFYSLGNHKSLNII 180

Query: 181 DGVGFGESLRGKYEWSP 197
           DGVGFGESLRGKYEWSP
Sbjct: 181 DGVGFGESLRGKYEWSP 193

[Close]

BLAST of Cp4.1LG14g01430 vs. NCBI nr
Match: XP_023522975.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322 bits (825), Expect = 1.48e-109
Identity = 176/209 (84.21%), Postives = 178/209 (85.17%), Query Frame = 0


Query: 2   HKRNLTTTV--SPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 61
           HKRN TT    SPVGSPTS NISDS+TKEQDRFLPIANVSRIMKKSLP NAKISKEAKET
Sbjct: 4   HKRNPTTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKET 63

Query: 62  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 121
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE
Sbjct: 64  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETE 123

Query: 122 EEKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH----- 181
           EEKHSLARQDD SPSP KS AA   A E IIGGKSANSVMDFQNLNSGFYSLG H     
Sbjct: 124 EEKHSLARQDDHSPSPAKSTAAVCPA-EPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHN 183

Query: 182 ------KSLNIIDGVGFGESLRGKYEWSP 197
                 KS +IIDGVGFGESLRGKYEWSP
Sbjct: 184 HHQGNQKSYHIIDGVGFGESLRGKYEWSP 211

[Close]

BLAST of Cp4.1LG14g01430 vs. NCBI nr
Match: XP_038898148.1 (nuclear transcription factor Y subunit B-like [Benincasa hispida])

HSP 1 Score: 320 bits (820), Expect = 1.44e-108
Identity = 174/201 (86.57%), Postives = 176/201 (87.56%), Query Frame = 0


Query: 2   HKRNLTTT----VSPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAK 61
           HKRN TTT    VSPVGSPTS NISDS+TKEQDRFLPIANVSRIMKKSLPANAKISKEAK
Sbjct: 4   HKRNFTTTAAAAVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAK 63

Query: 62  ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRE 121
           ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLK+YLNKYRE
Sbjct: 64  ETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKMYLNKYRE 123

Query: 122 TEEEKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH--- 181
           TEEEKHSLARQDDPS SP KSAA      EQII GKSANSVMDFQN NSGFYSLGN    
Sbjct: 124 TEEEKHSLARQDDPSLSPAKSAA------EQIISGKSANSVMDFQNFNSGFYSLGNQNQN 183

Query: 182 ----KSLNIIDGVGFGESLRG 191
               KS NIIDGVGFGESLRG
Sbjct: 184 QGNQKSFNIIDGVGFGESLRG 198

[Close]

BLAST of Cp4.1LG14g01430 vs. NCBI nr
Match: XP_008453748.1 (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA0044740.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa] >TYK16723.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 314 bits (804), Expect = 3.79e-106
Identity = 170/199 (85.43%), Postives = 175/199 (87.94%), Query Frame = 0


Query: 3   KRNLTTT---VSPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 62
           KRN TTT   VSPVGSPTS NISDS+TKEQDRFLPIANVSRIMKKSLPANAKISK+AKET
Sbjct: 5   KRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKET 64

Query: 63  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 122
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE
Sbjct: 65  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 124

Query: 123 EEKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH----- 182
           EEKHSLARQ+DPS SP KS+A      E IIGGKSANSVMDFQN NSGFYSLGN      
Sbjct: 125 EEKHSLARQEDPSLSPAKSSA------EHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQG 184

Query: 183 --KSLNIIDGVGFGESLRG 191
             KS NIIDGVGFGE+LRG
Sbjct: 185 SQKSFNIIDGVGFGENLRG 197

[Close]

BLAST of Cp4.1LG14g01430 vs. NCBI nr
Match: XP_004149164.1 (nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nuclear transcription factor Y subunit B-like [Cucumis sativus])

HSP 1 Score: 312 bits (799), Expect = 2.19e-105
Identity = 170/199 (85.43%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 3   KRNL---TTTVSPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 62
           KRN    T  VSPVGSPTS NISDS+TKEQDRFLPIANVSRIMKKSLPANAKISKEAKET
Sbjct: 5   KRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 64

Query: 63  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 122
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE
Sbjct: 65  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 124

Query: 123 EEKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH----- 182
           EEKHSLARQ+DPS SP KSAA      E IIGGKSANSVMDFQN NSGFYSLGN      
Sbjct: 125 EEKHSLARQEDPSLSPPKSAA------EHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQG 184

Query: 183 --KSLNIIDGVGFGESLRG 191
             KS NIIDGVGFGE+LRG
Sbjct: 185 NQKSFNIIDGVGFGENLRG 197

[Close]

BLAST of Cp4.1LG14g01430 vs. ExPASy TrEMBL
Match: A0A5D3CXU2 (Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005600 PE=3 SV=1)

HSP 1 Score: 314 bits (804), Expect = 1.83e-106
Identity = 170/199 (85.43%), Postives = 175/199 (87.94%), Query Frame = 0


Query: 3   KRNLTTT---VSPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 62
           KRN TTT   VSPVGSPTS NISDS+TKEQDRFLPIANVSRIMKKSLPANAKISK+AKET
Sbjct: 5   KRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKET 64

Query: 63  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 122
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE
Sbjct: 65  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 124

Query: 123 EEKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH----- 182
           EEKHSLARQ+DPS SP KS+A      E IIGGKSANSVMDFQN NSGFYSLGN      
Sbjct: 125 EEKHSLARQEDPSLSPAKSSA------EHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQG 184

Query: 183 --KSLNIIDGVGFGESLRG 191
             KS NIIDGVGFGE+LRG
Sbjct: 185 SQKSFNIIDGVGFGENLRG 197

[Close]

BLAST of Cp4.1LG14g01430 vs. ExPASy TrEMBL
Match: A0A1S3BY72 (nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC103494392 PE=3 SV=1)

HSP 1 Score: 314 bits (804), Expect = 1.83e-106
Identity = 170/199 (85.43%), Postives = 175/199 (87.94%), Query Frame = 0


Query: 3   KRNLTTT---VSPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 62
           KRN TTT   VSPVGSPTS NISDS+TKEQDRFLPIANVSRIMKKSLPANAKISK+AKET
Sbjct: 5   KRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKET 64

Query: 63  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 122
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE
Sbjct: 65  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 124

Query: 123 EEKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH----- 182
           EEKHSLARQ+DPS SP KS+A      E IIGGKSANSVMDFQN NSGFYSLGN      
Sbjct: 125 EEKHSLARQEDPSLSPAKSSA------EHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQG 184

Query: 183 --KSLNIIDGVGFGESLRG 191
             KS NIIDGVGFGE+LRG
Sbjct: 185 SQKSFNIIDGVGFGENLRG 197

[Close]

BLAST of Cp4.1LG14g01430 vs. ExPASy TrEMBL
Match: A0A0A0KXV6 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G037610 PE=3 SV=1)

HSP 1 Score: 312 bits (799), Expect = 1.06e-105
Identity = 170/199 (85.43%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 3   KRNL---TTTVSPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 62
           KRN    T  VSPVGSPTS NISDS+TKEQDRFLPIANVSRIMKKSLPANAKISKEAKET
Sbjct: 5   KRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 64

Query: 63  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 122
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE
Sbjct: 65  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 124

Query: 123 EEKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH----- 182
           EEKHSLARQ+DPS SP KSAA      E IIGGKSANSVMDFQN NSGFYSLGN      
Sbjct: 125 EEKHSLARQEDPSLSPPKSAA------EHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQG 184

Query: 183 --KSLNIIDGVGFGESLRG 191
             KS NIIDGVGFGE+LRG
Sbjct: 185 NQKSFNIIDGVGFGENLRG 197

[Close]

BLAST of Cp4.1LG14g01430 vs. ExPASy TrEMBL
Match: A0A6J1IZK6 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481354 PE=3 SV=1)

HSP 1 Score: 307 bits (787), Expect = 9.04e-104
Identity = 169/203 (83.25%), Postives = 173/203 (85.22%), Query Frame = 0


Query: 2   HKRNLTTTV--SPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKET 61
           HKRN TT    SPVGSPTS NISDS+TKEQDRFLPIANVSRIMKKSLP NAKISKEAKET
Sbjct: 4   HKRNPTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKET 63

Query: 62  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE 121
           VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE
Sbjct: 64  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETE 123

Query: 122 EEKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH----- 181
           EEKHSLARQDD SPSP KS AA  +A E IIGGKSANSVMDFQNLNSGFYSLG H     
Sbjct: 124 EEKHSLARQDDHSPSPAKSTAAVCSA-EPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHN 183

Query: 182 ------KSLNIIDGVGFGESLRG 191
                 KS +IIDGVGFGE+LRG
Sbjct: 184 HHPGNQKSYHIIDGVGFGENLRG 205

[Close]

BLAST of Cp4.1LG14g01430 vs. ExPASy TrEMBL
Match: A0A6J1FNG6 (transcriptional activator HAP3-like OS=Cucurbita moschata OX=3662 GN=LOC111447051 PE=3 SV=1)

HSP 1 Score: 303 bits (775), Expect = 6.95e-102
Identity = 168/207 (81.16%), Postives = 171/207 (82.61%), Query Frame = 0


Query: 2   HKRNLTTTV------SPVGSPTSDNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKE 61
           HKRN TT        SPVGSPTS NISDS+TKEQDRFLPIANVSRIMKKSLP NAKISKE
Sbjct: 4   HKRNTTTATATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKE 63

Query: 62  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 121
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 64  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKY 123

Query: 122 RETEEEKHSLARQDDPSPSPTKSAAAATAAVEQIIGGKSANSVMDFQNLNSGFYSLGNH- 181
           RETEEEKHSLARQDD SPSP KS AA   A E IIGGKSANSV DFQNLNSGFYSLG H 
Sbjct: 124 RETEEEKHSLARQDDHSPSPAKSTAAVCPA-EPIIGGKSANSVFDFQNLNSGFYSLGAHN 183

Query: 182 ----------KSLNIIDGVGFGESLRG 191
                     KS +IIDGVGFGE+LRG
Sbjct: 184 HNHNHHQGNPKSYHIIDGVGFGENLRG 209

[Close]

BLAST of Cp4.1LG14g01430 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-45
Identity = 95/131 (72.52%), Postives = 107/131 (81.68%), Query Frame = 0


Query: 23  DSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 82
           +++T+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 83  KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQDDPSPSPTKSAAA 142
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D         A 
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDKEGGGGGGGAG 135

Query: 143 ATAAVEQIIGG 153
           + +    + GG
Sbjct: 136 SGSGGAPMYGG 146

[Close]

BLAST of Cp4.1LG14g01430 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 174.9 bits (442), Expect = 6.5e-44
Identity = 87/116 (75.00%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 14  GSPTS-DNISDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 73
           GSP+S  N +++  KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 74  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQ 129
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of Cp4.1LG14g01430 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-43
Identity = 84/106 (79.25%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 22  SDSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQR 81
           S  + +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 82  EKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLAR 128
           EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126

[Close]

BLAST of Cp4.1LG14g01430 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 )

HSP 1 Score: 162.5 bits (410), Expect = 3.4e-40
Identity = 82/127 (64.57%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 11  SPVGSPTSDNISDST-----TKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVS 70
           SP G  + ++  D +      +EQDRFLPIAN+SRIMK+ LPAN KI+K+AKE VQECVS
Sbjct: 8   SPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVS 67

Query: 71  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSL 130
           EFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL +YRE E +    
Sbjct: 68  EFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGS 127

Query: 131 ARQDDPS 133
           A+  DP+
Sbjct: 128 AKGGDPN 134

[Close]

BLAST of Cp4.1LG14g01430 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 )

HSP 1 Score: 162.5 bits (410), Expect = 3.4e-40
Identity = 82/127 (64.57%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 11  SPVGSPTSDNISDST-----TKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVS 70
           SP G  + ++  D +      +EQDRFLPIAN+SRIMK+ LPAN KI+K+AKE VQECVS
Sbjct: 8   SPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVS 67

Query: 71  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSL 130
           EFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL +YRE E +    
Sbjct: 68  EFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGS 127

Query: 131 ARQDDPS 133
           A+  DP+
Sbjct: 128 AKGGDPN 134

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g01430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J7P4	3.4e-45	69.72	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]
O23310	2.9e-44	72.52	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	7.0e-43	77.39	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9SIT9	9.2e-43	75.00	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	2.0e-42	79.25	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Cp4.1LG14g01430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577262.1	4.20e-130	97.46	Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subs...	[more]
XP_023522975.1	1.48e-109	84.21	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_038898148.1	1.44e-108	86.57	nuclear transcription factor Y subunit B-like [Benincasa hispida]	[more]
XP_008453748.1	3.79e-106	85.43	PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA00...	[more]
XP_004149164.1	2.19e-105	85.43	nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nucle...	[more]

BLAST of Cp4.1LG14g01430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXU2	1.83e-106	85.43	Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BY72	1.83e-106	85.43	nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KXV6	1.06e-105	85.43	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0376...	[more]
A0A6J1IZK6	9.04e-104	83.25	nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FNG6	6.95e-102	81.16	transcriptional activator HAP3-like OS=Cucurbita moschata OX=3662 GN=LOC11144705...	[more]

BLAST of Cp4.1LG14g01430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14540.1	2.0e-45	72.52	nuclear factor Y, subunit B3	[more]
AT2G13570.1	6.5e-44	75.00	nuclear factor Y, subunit B7	[more]
AT5G47640.1	1.5e-43	79.25	nuclear factor Y, subunit B2	[more]
AT2G37060.1	3.4e-40	64.57	nuclear factor Y, subunit B8	[more]
AT2G37060.2	3.4e-40	64.57	nuclear factor Y, subunit B8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 108..128
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 60..78 score: 50.24 coord: 98..116 score: 41.63 coord: 79..97 score: 38.52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR11064:SF98	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11	coord: 14..176
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 19..150 e-value: 3.1E-47 score: 161.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 29..132
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 32..96 e-value: 5.1E-27 score: 93.9
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 14..176
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 63..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g01430.1	Cp4.1LG14g01430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding