Cp4.1LG14g01270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG14g01270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L23
Location	Cp4.1LG14: 3857060 .. 3857708 (+)
RNA-Seq Expression	Cp4.1LG14g01270
Synteny	Cp4.1LG14g01270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCAGCTTCCAAAATCGAAATCAAACGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGTCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTTCAGCATTGTTGAGGAAGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTGGAATTCAAATCTTACAAGGGTTTTGCTAATAGAGGCCGCCGACAAACTGGCAGTGCTGAAACTATTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAGTGTGAAGAAACGTATCCCAGTTACTTCTTAATTGTGATCTGTTTTGGATTTTCTTCTTCTTCTAAACGATAATAGTGTAATAGGTTGATGAGCTTAATGATAAATGTTTGATTTTCTAATTATGAAATGAACTTGTTGGCCCTCTTATGGGTTGTTTTGCAGGAGGAAGTTCTGTTCTGTTGCTTGA

mRNA sequence

ATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCAGCTTCCAAAATCGAAATCAAACGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGTCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTTCAGCATTGTTGAGGAAGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTGGAATTCAAATCTTACAAGGGTTTTGCTAATAGAGGCCGCCGACAAACTGGCAGTGCTGAAACTATTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGAGGAAGTTCTGTTCTGTTGCTTGA

Coding sequence (CDS)

ATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCAGCTTCCAAAATCGAAATCAAACGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGTCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTTCAGCATTGTTGAGGAAGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTGGAATTCAAATCTTACAAGGGTTTTGCTAATAGAGGCCGCCGACAAACTGGCAGTGCTGAAACTATTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGAGGAAGTTCTGTTCTGTTGCTTGA

Protein sequence

MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKSYKGFANRGRRQTGSAETIEPSTKFPWSSMRSGRRKFCSVA

Homology

[Close]

BLAST of Cp4.1LG14g01270 vs. ExPASy Swiss-Prot
Match: Q605B4 (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 10 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 69
          +   +  P+ASK++IK  +E ++G +VD VR LN+ GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

[Close]

BLAST of Cp4.1LG14g01270 vs. ExPASy Swiss-Prot
Match: A0KF23 (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 11 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 70
          I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of Cp4.1LG14g01270 vs. ExPASy Swiss-Prot
Match: Q0I161 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-06
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 6  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDY 65
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ + GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 66 KKAYVTLRNPLSI 75
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]

BLAST of Cp4.1LG14g01270 vs. ExPASy Swiss-Prot
Match: A4ST04 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 11 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 70
          I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of Cp4.1LG14g01270 vs. ExPASy Swiss-Prot
Match: Q0ABH3 (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 10 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL 69
          E+  K    A K EI++ +E L+  +V  VRT+ M GK+K+ G L   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

[Close]

BLAST of Cp4.1LG14g01270 vs. NCBI nr
Match: XP_023552749.1 (uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo] >XP_023552752.1 uncharacterized protein LOC111810293 [Cucurbita pepo subsp. pepo] >XP_023553074.1 uncharacterized protein LOC111810580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299 bits (766), Expect = 8.68e-102
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS
Sbjct: 81  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 153
           YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR
Sbjct: 141 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cp4.1LG14g01270 vs. NCBI nr
Match: XP_022929525.1 (uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothetical protein SDJN03_24874, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286 bits (733), Expect = 9.31e-97
Identity = 146/153 (95.42%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPV FK+
Sbjct: 81  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKA 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 153
           YKGF+NR RR+TGSAET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cp4.1LG14g01270 vs. NCBI nr
Match: XP_022985025.1 (uncharacterized protein LOC111483116 [Cucurbita maxima])

HSP 1 Score: 282 bits (721), Expect = 6.28e-95
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPV FK+
Sbjct: 81  YKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKA 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 153
           YKGF++R RR+TGSAET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFSDRSRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cp4.1LG14g01270 vs. NCBI nr
Match: KAG7015390.1 (rplW, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282 bits (722), Expect = 2.30e-93
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPV FK+
Sbjct: 81  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKA 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRS 151
           YKGF+NR RR+TGSAET+EPSTKFPWSSMRS
Sbjct: 141 YKGFSNRDRRRTGSAETVEPSTKFPWSSMRS 171

[Close]

BLAST of Cp4.1LG14g01270 vs. NCBI nr
Match: XP_022943267.1 (uncharacterized protein LOC111448049 [Cucurbita moschata])

HSP 1 Score: 277 bits (709), Expect = 4.23e-93
Identity = 142/153 (92.81%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKE V  K+
Sbjct: 81  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKT 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 153
           YKGFA+RGRR+ G AE +EPSTKFPWSSMRSGR
Sbjct: 141 YKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cp4.1LG14g01270 vs. ExPASy TrEMBL
Match: A0A6J1EUM4 (uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC111436066 PE=3 SV=1)

HSP 1 Score: 286 bits (733), Expect = 4.51e-97
Identity = 146/153 (95.42%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPV FK+
Sbjct: 81  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKA 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 153
           YKGF+NR RR+TGSAET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cp4.1LG14g01270 vs. ExPASy TrEMBL
Match: A0A6J1JA70 (uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 3.04e-95
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPV FK+
Sbjct: 81  YKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKA 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 153
           YKGF++R RR+TGSAET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFSDRSRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cp4.1LG14g01270 vs. ExPASy TrEMBL
Match: A0A6J1FSK6 (uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC111448049 PE=3 SV=1)

HSP 1 Score: 277 bits (709), Expect = 2.05e-93
Identity = 142/153 (92.81%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKE V  K+
Sbjct: 81  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKT 140

Query: 121 YKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 153
           YKGFA+RGRR+ G AE +EPSTKFPWSSMRSGR
Sbjct: 141 YKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of Cp4.1LG14g01270 vs. ExPASy TrEMBL
Match: A0A0A0L0J2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1)

HSP 1 Score: 272 bits (696), Expect = 2.03e-91
Identity = 139/154 (90.26%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNM+GKKKKRGG+LIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQTLNMEGKKKKRGGILIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSK SIVEEGEAK+HWLHEKEPV  K+
Sbjct: 81  YKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKKHWLHEKEPVGIKT 140

Query: 121 YKGFANRGRRQTGS-AETIEPSTKFPWSSMRSGR 153
           YKGFA+RGRR++G  AET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Cp4.1LG14g01270 vs. ExPASy TrEMBL
Match: A0A1S3C191 (uncharacterized protein LOC103495731 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495731 PE=3 SV=1)

HSP 1 Score: 270 bits (690), Expect = 1.67e-90
Identity = 139/154 (90.26%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPD
Sbjct: 21  MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVRTLNMEGKKKKRGGILIAKPD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPV  K+
Sbjct: 81  YKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGIKT 140

Query: 121 YKGFANRGRRQTGS-AETIEPSTKFPWSSMRSGR 153
           YKGFA+RGRR+ G  AET+EPSTKFPWSSMRSGR
Sbjct: 141 YKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of Cp4.1LG14g01270 vs. TAIR 10
Match: AT4G39880.1 (Ribosomal protein L23/L15e family protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-43
Identity = 96/155 (61.94%), Postives = 111/155 (71.61%), Query Frame = 0


Query: 1   MPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPD 60
           MP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNMDGKKKKRGGLLIAK D
Sbjct: 21  MPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVNTLNMDGKKKKRGGLLIAKAD 80

Query: 61  YKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIVEEGEAKRHWLHEKEPVEFKS 120
           YKKAYVTLR+PLSIS D++P++ IEED+++  K S F + EE + K HWL  KE  E   
Sbjct: 81  YKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGSSF-VEEEDDKKSHWLDRKEKREIGG 140

Query: 121 Y-KGFANRGRRQTGS----AETIEPSTKFPWSSMR 151
           Y KG   RG  +  S          + KFPWS+MR
Sbjct: 141 YGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g01270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q605B4	1.1e-06	41.67	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
A0KF23	1.9e-06	45.76	50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC...	[more]
Q0I161	1.9e-06	42.47	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW...	[more]
A4ST04	2.5e-06	45.76	50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rp...	[more]
Q0ABH3	2.5e-06	45.76	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]

BLAST of Cp4.1LG14g01270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552749.1	8.68e-102	100.00	uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo] >XP_023552752....	[more]
XP_022929525.1	9.31e-97	95.42	uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothet...	[more]
XP_022985025.1	6.28e-95	94.12	uncharacterized protein LOC111483116 [Cucurbita maxima]	[more]
KAG7015390.1	2.30e-93	95.36	rplW, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022943267.1	4.23e-93	92.81	uncharacterized protein LOC111448049 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG14g01270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUM4	4.51e-97	95.42	uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC1114360...	[more]
A0A6J1JA70	3.04e-95	94.12	uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116...	[more]
A0A6J1FSK6	2.05e-93	92.81	uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC1114480...	[more]
A0A0A0L0J2	2.03e-91	90.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1	[more]
A0A1S3C191	1.67e-90	90.26	uncharacterized protein LOC103495731 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cp4.1LG14g01270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39880.1	1.5e-43	61.94	Ribosomal protein L23/L15e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..119 e-value: 1.2E-19 score: 72.9
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 10..70 e-value: 1.6E-15 score: 57.2
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 1..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..151
None	No IPR available	PANTHER	PTHR12059:SF7	BNAC07G51330D PROTEIN	coord: 1..152
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 11..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g01270.1	Cp4.1LG14g01270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome