Cp4.1LG13g10940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g10940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionLEA_2 domain-containing protein
LocationCp4.1LG13: 6650684 .. 6653994 (+)
RNA-Seq ExpressionCp4.1LG13g10940
SyntenyCp4.1LG13g10940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTCTGCATTTCGTTTCTCGATTTCGATCGCCTGGATTATCGTATACGTTCTTGATTATTTTTGTTGTTGTCATGAATTGGATTTTCCTGCAGTTTATTTGGCCAGTAGCGGCTATAATTACACGGGAATTTCGTATTGATGATCGATCCCTTTGTCTGCTATCATTCTGATTCGGGTAGATTGGATTTTCGATTGGATATTGATAGATATGATTCTCTCACCATATTTCCATCGTCAATTGCCAGCTTTTTCAATGCCTAATAGTGAGCTTGAGATCTAAAAGTAAAACCCATTTGATATAGAATGTGTGTTGATTGTTTTAGTTTGTGCAGTTGTTTAATATCTGTTTGAATTGCAATCGTTATTTGCTTATTATAATCTCTGTTAACTGTTGTTTGCTCTATATGATAGGACACTCTTCCGTTTGTTTCTCTATTGATCAAGGATTTTTCTTTTTGCTATCTGATAATTTCCAGCCAAGCAATCTCATCAAGAAAATTTTCACCCAATTAATCACTCTCTTGATCAGATAAGCTTGTACCTTTAAGGCTGTAACTACCCCACTGATTGTTTTATTTCAAAGTCCTCTTCTGTAGATGGTAGTTTTCAAAGACCACGAATTCCCATAGCAATTGGGTTTATGGATTGGGATCTCTAGTAGGCGAGAAAATCACCCGTTTGATCGAGTAGTTTGTGACTATATCCATACGAACTCTTCCTTATTCCTTCCTTCGACCTGAAGTGAACCGAAGTTTCTTGAGTTCATGCAGAATGAATATGTTTTTGGGGTGAATTGAATGAAGTTTCTTGGTTTGTTTTGTAATCTCCATGCAACTTGGAAACCTAGAAAGGTAGGGAGCAGGATAGACCAGATCTCATTTCAAGTAGAACTAGAACAAAGGAAATGATATTGGACACGAACAAACTAGAAAAAACCGACTTCTCACTTCCTAATTGAACTTCCCGATGCTCGAAAAAATTTGTTTTCTGAGTTAGTTTCTTATACAGAATGATCCCAGTACAAGGAAATGAACCCAAATGAAATCAACAGAGATTATAGTCTCAGTCTTCAATGTATCCTTAGTCACCACATCAGTGCAAGTGCTAACCAAATCATTAATTGCTTTGTTCTTTGCTGCATACTCCTCCAGATTGAATTTATGCTCAATTGGAAGGTACGTGATAATATTTCCCTTTACACATGCATCTGTAGACAGTGGGACAGGACTCTGCAGCTGAGCATTTGAAGCTCACCATCACCCTTTTGCACGGAAAACATGGTCCACATGCATGGGAACAGTCTGGGAGGTTGGATCCTGTAGGGTATAACTCCATACCAAGTGCTTCTTCAGTTTTTTCCTGCACAGGCATACATGACAAGGAAACTGAATTAAGTTCTTTCCTGTTAGCATGTTGTCATGCTTCGTCTTGTTCGATGAGCATCTATTATTCATGTTTTTCCTATTCTTGTCTCAGATATATTTATTTTCTCACAAAATGTTTGATACGAAGTGGCGAGGAGACGAAGAAAACACGGTACCTCCTGGTGCGTTGAACTGCCTACTGGTCTGTGAGTATCTTCTACATTAAAGCTCACTGAAATATCATACACTTAAAAGGCTTAGGGATATGAGTGCATTTTCCTAGCAACTAGAATAGCAAAATAAGTTGACAAAAACCATATAGATGATGATTTTTCTTACTGTGATCCCAGCGGGTCGATGCATCAAGACGTCTTCCGATCATTAGTATGATGAAGAAAATCCAGAAAAGTAGAGAAGTTTGAGCCACAAGTGGGAATTTCCACATTGCTGTTTGATAATGCAAAAGCCAAAAGGATATAAGAAGTGGTAGAGATCCTAAAGGAGGAGAAATAGACTGCAAAGTTTGTTGGAAATGTTGGTGACATATGGTTTAGTATGCAGTGGGCATTTTATGGTGTAAAAATGGAATAAAGGTTAGTTTTTAATGTGGGAAGAGGTACATCTGATTCACCTCACATGATCCACGGCCCATTTTGAAGGTTCACATGTTTTCGCAAGTAAACTCAAAACACTTTCTGAAACTTTTAATGAACTGTGGCATTTGATCTTATACGTACGAAGGTACATATTTTTTACTCTTAATAGATCAATTTTTGAATTGCTGAATCTTTGGGTCTGATATTTTGAAAATTTAAGAGCATTGTCCCTTGTTCATGAGTGGATTTATCTTCCCGACGTTGTGTTACCTTTTGCTTGTATGCCATATAACATCGCTTTCAAACTCCCTTTTAAAATCTCTCTGTCTTTGTTTTCTAAAACCTTCTTCTTAAATCGAGGCTAGAGGCTTGAGCATACATTGCCCGGCCGTAGGTGACTTAAATACAAATTGGCTTGACTCACTAGCTGCTGAGAAGTGCGATTGTGACAAGTGGATACATTTTTATCTTCATGTGTTGTGTTGCAATGGTAGGTAGATACATTTATAGTCAATGTGGTTTCAGGTGTTCAGTCTAGGGGTCATTTTCCAGTTGGATATTGCCAACAACGTAAGATTGGGAAATTCTGTACATGTAATTGAAGCTGCTTGAATTGTCTATGCTATTTAATGATTTTTTAATTTTTATTTTTATTGTATCTTAAAATTATAAGTATTAGAAGACCCTGTTTGATAGGTTCTCCAGATCCTTTTCTTTTCCAGATAGATGGAATGAAATGAATTTAGAGCATTTTCTGTTTAGTGGGTTTATTTGTAAAAACAATATTCTGATTATGTTTGGATTTTTAGTGTTCTTTAAGATTTTTAATTTGCAACCGAACTATAAACCAATTCTTTGTTTTCATCCTCCTGTTTTTGCAGATTTTTCTGGAGTTCAAAGGTCTCGACTCTTGGGCCCATACCTTTCGGGTTACGTTGATTACATTTCTTTATGTTATTTGTACCCGTAACGGGTTTATAGATGAGTGCTATTGGAGTAGTTGGTCTGGTTCTGAACCTACATGCCTATGACTCCGTTTTTCAGGAATCCTTTTCCTTATCAGGATCGAAACTTAGAAAAATGGTTGGGACAACAAACATCCAGCTCGAGGAAGGGAAATCGACTGACAGAGGACATTTCTGTTTGTGGATTCCCAACCAAAGGCAGCATTGCACTCTAAGTGATTCTGTAAGTAACAATCTGTCTGTGTATATGATTATCAACGCTTTGTTAAGTTTCTTTCACCCCTGACCTTTTCAGCTCTGTTTTGTTGTCTTTTGAGGGAGGGGGTGAAAGGAGGATTATAGTCCCAAGTGAATGGGAAATGGGGAAATTATTTGGGTAA

mRNA sequence

ATGAAAACAGTGGGACAGGACTCTGCAGCTGAGCATTTGAAGCTCACCATCACCCTTTTGCACGGAAAACATGGTCCACATGCATGGGAACAGTCTGGGAGGTTGGATCCTATATATTTATTTTCTCACAAAATGTTTGATACGAAGTGGCGAGGAGACGAAGAAAACACGGTACCTCCTGGTGCGTTGAACTGCCTACTGCGGGTCGATGCATCAAGACGTCTTCCGATCATTAGTATGATGAAGAAAATCCAGAAAAGTAGAGAAGTGTTCAGTCTAGGGGTCATTTTCCAGTTGGATATTGCCAACAACGTAAGATTGGGAAATTCTGTACATGGAGGGGGTGAAAGGAGGATTATAGTCCCAAGTGAATGGGAAATGGGGAAATTATTTGGGTAA

Coding sequence (CDS)

ATGAAAACAGTGGGACAGGACTCTGCAGCTGAGCATTTGAAGCTCACCATCACCCTTTTGCACGGAAAACATGGTCCACATGCATGGGAACAGTCTGGGAGGTTGGATCCTATATATTTATTTTCTCACAAAATGTTTGATACGAAGTGGCGAGGAGACGAAGAAAACACGGTACCTCCTGGTGCGTTGAACTGCCTACTGCGGGTCGATGCATCAAGACGTCTTCCGATCATTAGTATGATGAAGAAAATCCAGAAAAGTAGAGAAGTGTTCAGTCTAGGGGTCATTTTCCAGTTGGATATTGCCAACAACGTAAGATTGGGAAATTCTGTACATGGAGGGGGTGAAAGGAGGATTATAGTCCCAAGTGAATGGGAAATGGGGAAATTATTTGGGTAA

Protein sequence

MKTVGQDSAAEHLKLTITLLHGKHGPHAWEQSGRLDPIYLFSHKMFDTKWRGDEENTVPPGALNCLLRVDASRRLPIISMMKKIQKSREVFSLGVIFQLDIANNVRLGNSVHGGGERRIIVPSEWEMGKLFG
Homology
[Close]
BLAST of Cp4.1LG13g10940 vs. NCBI nr
Match: KAE8646651.1 (hypothetical protein Csa_005292 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 7.87e-16
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 1  MKTVGQDSAAEHLKLTITLLHGKHGPHAWEQSGRLDPI 38
          ++TVGQDSA EHLKLTITLLHGKHGPHAWEQSGRLDP+
Sbjct: 32 LETVGQDSATEHLKLTITLLHGKHGPHAWEQSGRLDPV 69

[Close]
BLAST of Cp4.1LG13g10940 vs. NCBI nr
Match: KAG7032905.1 (hypothetical protein SDJN02_06955, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.9 bits (185), Expect = 3.99e-15
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 3  TVGQDSAAEHLKLTITLLHGKHGPHAWEQSGRLDPI 38
          TVG DSA EHLKLTITLLHGKHGPHAWEQSGRLDP+
Sbjct: 23 TVGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPV 58

[Close]
BLAST of Cp4.1LG13g10940 vs. NCBI nr
Match: KAG6602224.1 (Protein phosphatase 1 regulatory subunit INH3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 1.09e-14
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 1   MKTVGQDSAAEHLKLTITLLHGKHGPHAWEQSGRLDPIYLF 41
           ++TVG DSA EHLKLTITLLHGKHGPHAWEQSGRLDP+  F
Sbjct: 122 VQTVGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVGEF 162

[Close]
BLAST of Cp4.1LG13g10940 vs. NCBI nr
Match: VFQ83249.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 51.6 bits (122), Expect = 1.34e-04
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 0 

Query: 1  MKTVGQDSAAEHLKLTITLLHGKHGPHAWEQSGRLDP 37
          M  V   S  EH KLTIT LHG+H PHA+EQSG LDP
Sbjct: 1  MGQVSASSRLEHTKLTITSLHGRHDPHAFEQSGSLDP 37

[Close]
BLAST of Cp4.1LG13g10940 vs. NCBI nr
Match: RZS13626.1 (hypothetical protein BHM03_00045231 [Ensete ventricosum])

HSP 1 Score: 48.5 bits (114), Expect = 3.67e-04
Identity = 23/37 (62.16%), Postives = 24/37 (64.86%), Query Frame = 0 

Query: 1  MKTVGQDSAAEHLKLTITLLHGKHGPHAWEQSGRLDP 37
          M  V   S+  H KLTIT   G H PHAWEQSGRLDP
Sbjct: 1  MGHVSASSSDAHTKLTITRRQGLHDPHAWEQSGRLDP 37

[Close]
BLAST of Cp4.1LG13g10940 vs. ExPASy TrEMBL
Match: A0A484M3V8 (LEA_2 domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS25025 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.51e-05
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 0 

Query: 1  MKTVGQDSAAEHLKLTITLLHGKHGPHAWEQSGRLDP 37
          M  V   S  EH KLTIT LHG+H PHA+EQSG LDP
Sbjct: 1  MGQVSASSRLEHTKLTITSLHGRHDPHAFEQSGSLDP 37

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g10940 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g10940 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646651.17.87e-1689.47hypothetical protein Csa_005292 [Cucumis sativus][more]
KAG7032905.13.99e-1591.67hypothetical protein SDJN02_06955, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6602224.11.09e-1482.93Protein phosphatase 1 regulatory subunit INH3, partial [Cucurbita argyrosperma s... [more]
VFQ83249.11.34e-0464.86unnamed protein product [Cuscuta campestris][more]
RZS13626.13.67e-0462.16hypothetical protein BHM03_00045231 [Ensete ventricosum][more]
BLAST of Cp4.1LG13g10940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A484M3V86.51e-0564.86LEA_2 domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS250... [more]
BLAST of Cp4.1LG13g10940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g10940.1Cp4.1LG13g10940.1mRNA