Cp4.1LG13g10770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g10770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG13: 6637659 .. 6639938 (-)
RNA-Seq ExpressionCp4.1LG13g10770
SyntenyCp4.1LG13g10770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTCAAGGAAGAACAGAAAGCTTTCACCGTACTTTTTTTGGGTAAGAAGAAGGGAAAGTGATAGTTTCTGCTGTTTGGTTGCTGGGAAAATTGTAAGAAATTATGAAGATTATAGAAGAAATGAAAGGAACTTATGAGTAGAAGTGAAGTTCCTTGGATATGCTACTCTCACTCTGGTGGAACGTTACCATAATGAATGAGAACAAGCACTTAAAGCAAGAAGAGAGAGAGAGAAAGAAGAGACTGCAAAACAGGTAAGGAAACTTAAGCAAGCAGCCAGAGAGACTGAGAGAGACCAACTTTGGCGACTTGTGAATTGCTTGTGTTAGATAGGGACGAGAATTTATCGAACATCGAGCTGCCCCAGCAGGGCTGCTTCATCATTACTGTTCGGTATTACTATTGGACGTGAATTCTAAAATTTTCATCTCTAAACACTACAAGTTCCAAATATAAGATAGTTGCATCATTTTTTTATTTATTATTATTTTTTTTTATATATATAGAACGGTGCTAACCTGTCAGCTACACTGTGCAGTTTCATCGATACATTCCCGGCCAAGGGAGGAGAGTTTGCATCATTTTTTTTTTCGTATATAGAACGGTGCTAATCTGTCGGCTACATTGTGCAGTTTCATTGATTCATTCCCAGCCAAGGAGGAGAGTTTGCATCATTATATATATATATATTATTTTGTATATAGAACGTTGCTAATCTGTCGGCTACATTGTGCAGTTTCATCAATTCATCCCCAACGAAGGAGGATTGTTTGCATCATTTTTTTTCGTATATAGAAGAGTGCTAATCTATCGGCTACATTGTGCAGTTTCATTCATTCATTCCCAGCCAAAGAGGAGAGTTTGCATCTTTTTTTTTTTTCGTATATAGAACGGTGCTAATCTGTCAGCTACATTGTGCAGTTTCATCAATTCATTCCCAACGAAGGAGGAGAGTTTGCATCATTTTTTTTCTCTTATATAGAACAATGCTAATCTATCGGCTACATTGTGCAGTTTCATCGATTCATTCCCGACCAAGGAGGAGAGTTCGCATCATTTTTCTTTTTTTTTTTTTGGTATATAGAACGGTACTAATCTGTCGGCTACATTGTGCAGTTTCATCGATACATTTCTCGGCCAAGGAGAGAGAGAGAGAGAGAGAGAGGTAAAGTGAGCAAACTTTTCTTTGGCCTTCTCATATTTGGATGTATAAACATAATAATAATAATTCCACTCCTCTTTTTGATTCTTCCACCGCACCCTGTCTCTGGAATGGTACCCAGAGGAGTGGAATCATCAATTTTTGTCTAACCAAATACGCAGCTTTCTCTGTTCTTTATTATTACCCTTTCTTTCAGCCTAATCATTGAATATATTTGAGTTATTCTTATTCCACCTTTTTTCCTTTTTCTTTATTTTATTTTTTAATTCTTACTTGTGTCAGACTGGCAGGATTGGCAGGATTGGATAATAAAAATAAAAAAAAAATCCCATAATTGGCAGGTAAGATTATTTCCCTTGTAATTTTCGAGGTGGTAAAAATTTTAAATTATTAATTATGAGTTCAAATTTTGCCTTGGTTTATACTTTTTGGGGGTGAAAATTCATGGTAATTCTATTCCATTGTTATTAAGTTTCTTAAAAATTTTCATCCGTGCATTAATTTTGATTTTTCTCTGAACTTTTAATAGGATGTGCTGAGGCTTTTGGGATCCTCGTGGGTCGAGTAATTGGTAAGTCTTATCTATTTACCTCTCGAGGCACAATATCTTGGGTTTCATAATTGAAGTTAGAAATATTTACAATAGCTACGAGAGTGATGAATAATGGTCAATCGATCATAGTTCAACCGGTTAGTTTTATATCTTTCAAACAATAATATATTTTATTTTAAGGTTTGGGATTTAATTTTTTTTTTTTTAACAAAAATTTTAAAAAAGAGGGACAATTTAAATGAGAGTCACATGGCTTCCACAATGGCCCATTGCCCTTTGTCTTTAGGTTAAAGAAAGCGAATGGGCACAGCCATTCAGCACCCCTTAATTTGCTGGAAATGACCCTATTATTTTAGGGCATTGGGACCCACCATTTTTGGGATATTTAGTTATTTACATATTAATTCACCAACTCACAATTTATCTCTTTTCATTATTTACCTCTTTGGCCGACACAAAATAAGAAAGTTCATATCTTTTTTAGTTTCAAAATAAATAAATAAATTTTGTTTTATTTTTCTAATGTGTTTATAAGCTTGAAGATTAAGCATACCGTTTAATTC

mRNA sequence

TCTTTCAAGGAAGAACAGAAAGCTTTCACCGGACGAGAATTTATCGAACATCGAGCTGCCCCAGCAGGGCTGCTTCATCATTACTGTTCGAACGGTGCTAACCTGTCAGCTACACTGTGCAGTTTCATCGATACATTCCCGGCCAAGGGAGGAGAAACGTTGCTAATCTGTCGGCTACATTGTGCAGTTTCATCAATTCATCCCCAACGAAGGAGGATTAACGGTGCTAATCTGTCAGCTACATTGTGCAGTTTCATCAATTCATTCCCAACGAAGGAGGAGAACTGGCAGGATTGGCAGGATTGGATAATAAAAATAAAAAAAAAATCCCATAATTGGCAGGATGTGCTGAGGCTTTTGGGATCCTCGTGGGTCGAGTAATTGGTAAGTCTTATCTATTTACCTCTCGAGGCACAATATCTTGGGTTTCATAATTGAAGTTAGAAATATTTACAATAGCTACGAGAGTGATGAATAATGGTCAATCGATCATAGTTCAACCGGTTAGTTTTATATCTTTCAAACAATAATATATTTTATTTTAAGGTTTGGGATTTAATTTTTTTTTTTTTAACAAAAATTTTAAAAAAGAGGGACAATTTAAATGAGAGTCACATGGCTTCCACAATGGCCCATTGCCCTTTGTCTTTAGGTTAAAGAAAGCGAATGGGCACAGCCATTCAGCACCCCTTAATTTGCTGGAAATGACCCTATTATTTTAGGGCATTGGGACCCACCATTTTTGGGATATTTAGTTATTTACATATTAATTCACCAACTCACAATTTATCTCTTTTCATTATTTACCTCTTTGGCCGACACAAAATAAGAAAGTTCATATCTTTTTTAGTTTCAAAATAAATAAATAAATTTTGTTTTATTTTTCTAATGTGTTTATAAGCTTGAAGATTAAGCATACCGTTTAATTC

Coding sequence (CDS)

TCTTTCAAGGAAGAACAGAAAGCTTTCACCGGACGAGAATTTATCGAACATCGAGCTGCCCCAGCAGGGCTGCTTCATCATTACTGTTCGAACGGTGCTAACCTGTCAGCTACACTGTGCAGTTTCATCGATACATTCCCGGCCAAGGGAGGAGAAACGTTGCTAATCTGTCGGCTACATTGTGCAGTTTCATCAATTCATCCCCAACGAAGGAGGATTAACGGTGCTAATCTGTCAGCTACATTGTGCAGTTTCATCAATTCATTCCCAACGAAGGAGGAGAACTGGCAGGATTGGCAGGATTGGATAATAAAAATAAAAAAAAAATCCCATAATTGGCAGGATGTGCTGAGGCTTTTGGGATCCTCGTGGGTCGAGTAA

Protein sequence

SFKEEQKAFTGREFIEHRAAPAGLLHHYCSNGANLSATLCSFIDTFPAKGGETLLICRLHCAVSSIHPQRRRINGANLSATLCSFINSFPTKEENWQDWQDWIIKIKKKSHNWQDVLRLLGSSWVE
Homology
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BLAST of Cp4.1LG13g10770 vs. NCBI nr
Match: KAG7016380.1 (hypothetical protein SDJN02_21488, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.1 bits (144), Expect = 5.31e-09
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 95  NWQDWQDWIIKIKKKSHNWQDVLRLLGSSW 124
           +WQDWQDWIIK  KKSHNWQDVLRLL SSW
Sbjct: 53  DWQDWQDWIIK--KKSHNWQDVLRLLASSW 80

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g10770 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g10770 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016380.15.31e-0986.67hypothetical protein SDJN02_21488, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cp4.1LG13g10770 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g10770 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g10770.1Cp4.1LG13g10770.1mRNA