Cp4.1LG13g10560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g10560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description40S ribosomal protein S17
LocationCp4.1LG13: 6773545 .. 6776023 (-)
RNA-Seq ExpressionCp4.1LG13g10560
SyntenyCp4.1LG13g10560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGTGTTCGCACCAAGACTGTGAAGAAATCTTCACGCCAGGTGATTGAGAGGTATTACTCTAAAATGACACTGGATTTCCACACAAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTACGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGTTGCAAGAAGAAGAGCGCGAACGCCGTATGGACTTCGTGCCAGACGAATCAGCCATTAAGATTAACGAAATCAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTTGTGGAGGTTGAGCCACAGGCTATGAATCTGCCCCAAGCTTTCGGTAGGGGTGCAGGTGGCCCAAGGAGATACTAAGGTAATTGAGATCACGCAACAGGTTTTGGGAATTAGAAGTTTTTTGTTATTCAATATCATAAGACCATGGACGTTCTTGTTGCTAGTTATTTTCAGATTGGTCCTTATTTTTGGTTCTTGTCTTTTTAGTTTTGATTTTGAATGGATGATAATTTTGTTTCATGTATTGGAGATCTATGAGTAAAAGTTTTTGCCATTAGTCAGATTTCACCACTGCCATTCTCGCTCATTTAGTGCAGCTTCCCGATGAATTTGCTCTTTTCTGAGGCATTTCTTTTGATCAATCATGTGGGGTGCTGTTTAATCTTCAGTTATAAGGTTTCGAATCCCCCTTCGATTTATCGTATGAACATGCAAAGTTACTACCTTGTGGTATTTTGATTTATGATTGAAACTTTAGATTTGGTTTTACGTTCTGTCGTTGAATTTTGGTTCGGGTTAAACTTTCGGGTTGCATCTATTATTAATGGGTCATTATATTTTAAAACACAGAAGGGGGGGACACCCATCTAATATAAGTTATGTGATTCTATTATGTTCTGCTTGACATGACTTTGCACAACACCAACGAGGTGCGTCTAGCTAAAGAACGACTAGGATTTCCCGACTAGAATTGTGCATCAATTGATCTTAAAATTGAAATCAGAGGCAAATAATAATAATAAACATTGAGAAATAAGAATGAAACTTTGGTAAAGAACCCATTGCTATCTCGGTTGTGCCATAAGAGACTATAGAGAAGTCGGAATAGGAATGCACTCATTTTAGGGTGGGCTTACTACTTGGATGCTTTCAGCAACTATTTCCTCTGCACTTAGTTGCCCAACATTTATCATGAGTGCGATAAGTGGTACACCAGAGGTGTATACTTCCCGATCCTCACAATGCTCTAATGCTCACACTGAATATGGATTGAACTGTCTCACGACGTTTTAAACTCAGCTCATATATTTGCTTTAATGGGCAAACAACCCAACTCTTGGAGCATACTATAGCTCTAGATGGCAAAGAGTTGACATTGAAGTGCCAAACCTTGCCGTTGATCTGTTGATGTGAGCTCTTGAGGAAGATTAGTCTGTTATCCCTAAAGTAACTTTTATCCGTTGAGTGACAATCCTTCCATTGGCAATTGTGGCAAGTTAAAGGGTAGGCAATCAATCAGAGTGCTAGTAGGGACACTCGAGATCAAGGAAAGCAGCCTCAATTCCTTTGCTACGAATGTCGTTTTTTTAAATTTCGAGAATTAAATAAACATAATCTTAATTCTCATACAACTCTTTTTTTTCTTTTCGAAAAAGATGGTCAATCTTCAAATCAAAATTATTACATTTTAATTAAAAAAAGAAAAAAACTGAATTGGTTCGATATAAAACTAAAAACTTAATTGCGTCGGTAAAGTACATTAAAATTGAATATAATCATATTTTTATTCACGTCAAATGCACTAGATTTACAATTCGAACTTCAATTTCATTAAATAATAAAGACATGGACATTGTCTATCATCACCAGAAACGACAAAATCTTTGGTTTACGATATGTTTTGCATGAAAAGTATATTAATAGTTATTGAATTTATACTCTTAATTATATCTTTCAATGAAGTATACTAAGTTTGGTTCACTTTGAAGAAAAAAAAAAGGATGAATCTCTACTTTTGTATTATATTTATTTGGCACGAGAAATATGGCCATAAATATAAATGGAACATTTATGCTTACAAGAAGGAAAATAGTGGCATTCCCTCTTCTCGATTTTGTTAGTGAAATCAGAAATTTCTGAATCCCAATTTGGGGTTTTCGACGAAACGGGTGTTTCGCGGCAATCTCATCTCCATCCATTTTGCTCATCAAATGATCTTCAATCGCTATATCTTGAAGATATGTTCGAGAAAACGAGAATGGAAGTGGAGAAAGGGAAGAAAAGGAAGATTCGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGATTGGCGATTTTTCTACCAATGATATGACTATTAGAGTTTTGGATCATCGCCGTTTATGGCTTCTCGATGGCGGTCAAGTTGGCTAG

mRNA sequence

ATGGGTCGTGTTCGCACCAAGACTGTGAAGAAATCTTCACGCCAGGTGATTGAGAGGTATTACTCTAAAATGACACTGGATTTCCACACAAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTACGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGTTGCAAGAAGAAGAGCGCGAACGCCGTATGGACTTCGTGCCAGACGAATCAGCCATTAAGATTAACGAAATCAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTTGTGGAGGTTGAGCCACAGGCTATGAATCTGCCCCAAGCTTTCGGTAGGGGTGCAGTGAAATCAGAAATTTCTGAATCCCAATTTGGGGTTTTCGACGAAACGGGTGTTTCGCGGCAATCTCATCTCCATCCATTTTGCTCATCAAATGATCTTCAATCGCTATATCTTGAAGATATGTTCGAGAAAACGAGAATGGAAGTGGAGAAAGGGAAGAAAAGGAAGATTCGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGATTGGCGATTTTTCTACCAATGATATGACTATTAGAGTTTTGGATCATCGCCGTTTATGGCTTCTCGATGGCGGTCAAGTTGGCTAG

Coding sequence (CDS)

ATGGGTCGTGTTCGCACCAAGACTGTGAAGAAATCTTCACGCCAGGTGATTGAGAGGTATTACTCTAAAATGACACTGGATTTCCACACAAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTACGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGTTGCAAGAAGAAGAGCGCGAACGCCGTATGGACTTCGTGCCAGACGAATCAGCCATTAAGATTAACGAAATCAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTTGTGGAGGTTGAGCCACAGGCTATGAATCTGCCCCAAGCTTTCGGTAGGGGTGCAGTGAAATCAGAAATTTCTGAATCCCAATTTGGGGTTTTCGACGAAACGGGTGTTTCGCGGCAATCTCATCTCCATCCATTTTGCTCATCAAATGATCTTCAATCGCTATATCTTGAAGATATGTTCGAGAAAACGAGAATGGAAGTGGAGAAAGGGAAGAAAAGGAAGATTCGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGATTGGCGATTTTTCTACCAATGATATGACTATTAGAGTTTTGGATCATCGCCGTTTATGGCTTCTCGATGGCGGTCAAGTTGGCTAG

Protein sequence

MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEVEPQAMNLPQAFGRGAVKSEISESQFGVFDETGVSRQSHLHPFCSSNDLQSLYLEDMFEKTRMEVEKGKKRKIRVVFNSNFRKRIGDFSTNDMTIRVLDHRRLWLLDGGQVG
Homology
[Close]
BLAST of Cp4.1LG13g10560 vs. ExPASy Swiss-Prot
Match: Q9SQZ1 (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 223.4 bits (568), Expect = 2.6e-57
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQAMNLPQAFGRGA 136
           E Q    P  FGR A
Sbjct: 121 ETQQAMAPAVFGRPA 135

[Close]
BLAST of Cp4.1LG13g10560 vs. ExPASy Swiss-Prot
Match: P49215 (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 222.2 bits (565), Expect = 5.9e-57
Identity = 117/136 (86.03%), Postives = 126/136 (92.65%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVE- 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK + I+VDKETLDML+A GMSD+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 121 -VEPQAMNLPQAFGRG 135
             EPQA+    ++GRG
Sbjct: 121 AAEPQAVAALPSYGRG 136

[Close]
BLAST of Cp4.1LG13g10560 vs. ExPASy Swiss-Prot
Match: Q9LZ17 (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 221.9 bits (564), Expect = 7.7e-57
Identity = 117/135 (86.67%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EPQAMNLP-QAFGRG 135
           EPQ    P  AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]
BLAST of Cp4.1LG13g10560 vs. ExPASy Swiss-Prot
Match: Q9SJ36 (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-55
Identity = 115/133 (86.47%), Postives = 121/133 (90.98%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EPQAMNLP-QAFG 133
           EPQ    P  AFG
Sbjct: 121 EPQQAMAPIAAFG 133

[Close]
BLAST of Cp4.1LG13g10560 vs. ExPASy Swiss-Prot
Match: P49205 (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-55
Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EPQAMNLP-QAFGRG 135
           +PQ    P  AFG G
Sbjct: 121 DPQQAMAPIPAFGGG 135

[Close]
BLAST of Cp4.1LG13g10560 vs. NCBI nr
Match: KAG6578826.1 (40S ribosomal protein S17-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 362 bits (930), Expect = 3.51e-125
Identity = 186/194 (95.88%), Postives = 191/194 (98.45%), Query Frame = 0 

Query: 24  MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMD 83
           MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMD
Sbjct: 1   MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMD 60

Query: 84  FVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEVEPQAMNLPQAFGRGAVKSEISES 143
           FVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEVEPQAMNLPQAFGRGAVKSEISES
Sbjct: 61  FVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEVEPQAMNLPQAFGRGAVKSEISES 120

Query: 144 QFGVFDETGVSRQSHLHPFCSSNDLQSLYLEDMFEKTRMEVEKGKKRKIRVVFNSNFRKR 203
           QFGVFDETG  RQSHLHPFCSSNDLQSL+LEDMFEKTRMEVEKGKKRK+RVVFNS+FRKR
Sbjct: 121 QFGVFDETGALRQSHLHPFCSSNDLQSLHLEDMFEKTRMEVEKGKKRKVRVVFNSSFRKR 180

Query: 204 IGDFSTNDMTIRVL 217
           IGDFSTN+MTI V+
Sbjct: 181 IGDFSTNNMTIEVI 194

[Close]
BLAST of Cp4.1LG13g10560 vs. NCBI nr
Match: XP_022939887.1 (40S ribosomal protein S17-3-like [Cucurbita moschata] >XP_023550932.1 40S ribosomal protein S17-3-like [Cucurbita pepo subsp. pepo] >KAG7016353.1 40S ribosomal protein S17-4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257 bits (656), Expect = 2.69e-84
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMNLPQAFGRGA 135
           EPQAMNLPQAFGRGA
Sbjct: 121 EPQAMNLPQAFGRGA 135

[Close]
BLAST of Cp4.1LG13g10560 vs. NCBI nr
Match: XP_022992704.1 (40S ribosomal protein S17-3-like [Cucurbita maxima])

HSP 1 Score: 255 bits (651), Expect = 1.55e-83
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVE 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEF 120

Query: 121 EPQAMNLPQAFGRGA 135
           EPQAMNLPQAFGRGA
Sbjct: 121 EPQAMNLPQAFGRGA 135

[Close]
BLAST of Cp4.1LG13g10560 vs. NCBI nr
Match: XP_022134321.1 (40S ribosomal protein S17-4 [Momordica charantia])

HSP 1 Score: 249 bits (636), Expect = 2.97e-81
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+EIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMNLPQAFGRGAV 136
           EPQAM  PQAFGRGAV
Sbjct: 121 EPQAMIPPQAFGRGAV 136

[Close]
BLAST of Cp4.1LG13g10560 vs. NCBI nr
Match: XP_008456611.1 (PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo] >TYK11778.1 40S ribosomal protein S17-3 [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (635), Expect = 4.21e-81
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+EIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMNLPQAFGRGA 135
           EPQAM  PQAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]
BLAST of Cp4.1LG13g10560 vs. ExPASy TrEMBL
Match: A0A6J1FI27 (40S ribosomal protein S17-3-like OS=Cucurbita moschata OX=3662 GN=LOC111445618 PE=3 SV=1)

HSP 1 Score: 257 bits (656), Expect = 1.30e-84
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMNLPQAFGRGA 135
           EPQAMNLPQAFGRGA
Sbjct: 121 EPQAMNLPQAFGRGA 135

[Close]
BLAST of Cp4.1LG13g10560 vs. ExPASy TrEMBL
Match: A0A6J1JY94 (40S ribosomal protein S17-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488966 PE=3 SV=1)

HSP 1 Score: 255 bits (651), Expect = 7.51e-84
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVE 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEF 120

Query: 121 EPQAMNLPQAFGRGA 135
           EPQAMNLPQAFGRGA
Sbjct: 121 EPQAMNLPQAFGRGA 135

[Close]
BLAST of Cp4.1LG13g10560 vs. ExPASy TrEMBL
Match: A0A6J1BXJ2 (40S ribosomal protein S17-4 OS=Momordica charantia OX=3673 GN=LOC111006610 PE=3 SV=1)

HSP 1 Score: 249 bits (636), Expect = 1.44e-81
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+EIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMNLPQAFGRGAV 136
           EPQAM  PQAFGRGAV
Sbjct: 121 EPQAMIPPQAFGRGAV 136

[Close]
BLAST of Cp4.1LG13g10560 vs. ExPASy TrEMBL
Match: A0A5D3CKV8 (40S ribosomal protein S17-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G001050 PE=3 SV=1)

HSP 1 Score: 249 bits (635), Expect = 2.04e-81
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+EIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMNLPQAFGRGA 135
           EPQAM  PQAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]
BLAST of Cp4.1LG13g10560 vs. ExPASy TrEMBL
Match: A0A1S3C4X5 (40S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1)

HSP 1 Score: 249 bits (635), Expect = 2.04e-81
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+EIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMNLPQAFGRGA 135
           EPQAM  PQAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]
BLAST of Cp4.1LG13g10560 vs. TAIR 10
Match: AT3G10610.1 (Ribosomal S17 family protein )

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-58
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQAMNLPQAFGRGA 136
           E Q    P  FGR A
Sbjct: 121 ETQQAMAPAVFGRPA 135

[Close]
BLAST of Cp4.1LG13g10560 vs. TAIR 10
Match: AT5G04800.1 (Ribosomal S17 family protein )

HSP 1 Score: 221.9 bits (564), Expect = 5.5e-58
Identity = 117/135 (86.67%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EPQAMNLP-QAFGRG 135
           EPQ    P  AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]
BLAST of Cp4.1LG13g10560 vs. TAIR 10
Match: AT5G04800.2 (Ribosomal S17 family protein )

HSP 1 Score: 221.9 bits (564), Expect = 5.5e-58
Identity = 117/135 (86.67%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EPQAMNLP-QAFGRG 135
           EPQ    P  AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]
BLAST of Cp4.1LG13g10560 vs. TAIR 10
Match: AT5G04800.3 (Ribosomal S17 family protein )

HSP 1 Score: 221.9 bits (564), Expect = 5.5e-58
Identity = 117/135 (86.67%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EPQAMNLP-QAFGRG 135
           EPQ    P  AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]
BLAST of Cp4.1LG13g10560 vs. TAIR 10
Match: AT5G04800.4 (Ribosomal S17 family protein )

HSP 1 Score: 221.9 bits (564), Expect = 5.5e-58
Identity = 117/135 (86.67%), Postives = 123/135 (91.11%), Query Frame = 0 

Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EPQAMNLP-QAFGRG 135
           EPQ    P  AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g10560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SQZ12.6e-5785.1940S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3[more]
P492155.9e-5786.0340S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3[more]
Q9LZ177.7e-5786.6740S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3[more]
Q9SJ361.9e-5586.4740S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3[more]
P492052.5e-5585.1940S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3[more]
BLAST of Cp4.1LG13g10560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578826.13.51e-12595.8840S ribosomal protein S17-3, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022939887.12.69e-84100.0040S ribosomal protein S17-3-like [Cucurbita moschata] >XP_023550932.1 40S riboso... [more]
XP_022992704.11.55e-8399.2640S ribosomal protein S17-3-like [Cucurbita maxima][more]
XP_022134321.12.97e-8197.0640S ribosomal protein S17-4 [Momordica charantia][more]
XP_008456611.14.21e-8197.78PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo] >TYK11778.1 40S ribosomal ... [more]
BLAST of Cp4.1LG13g10560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FI271.30e-84100.0040S ribosomal protein S17-3-like OS=Cucurbita moschata OX=3662 GN=LOC111445618 P... [more]
A0A6J1JY947.51e-8499.2640S ribosomal protein S17-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488966 PE=... [more]
A0A6J1BXJ21.44e-8197.0640S ribosomal protein S17-4 OS=Momordica charantia OX=3673 GN=LOC111006610 PE=3 ... [more]
A0A5D3CKV82.04e-8197.7840S ribosomal protein S17-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A1S3C4X52.04e-8197.7840S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1[more]
BLAST of Cp4.1LG13g10560 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G10610.11.9e-5885.19Ribosomal S17 family protein [more]
AT5G04800.15.5e-5886.67Ribosomal S17 family protein [more]
AT5G04800.25.5e-5886.67Ribosomal S17 family protein [more]
AT5G04800.35.5e-5886.67Ribosomal S17 family protein [more]
AT5G04800.45.5e-5886.67Ribosomal S17 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001210Ribosomal protein S17ePFAMPF00833Ribosomal_S17ecoord: 1..119
e-value: 3.3E-58
score: 194.9
IPR001210Ribosomal protein S17ePANTHERPTHR1073240S RIBOSOMAL PROTEIN S17coord: 1..136
IPR001210Ribosomal protein S17eHAMAPMF_00511Ribosomal_S17ecoord: 1..63
score: 19.921467
IPR036401Ribosomal protein S17e-like superfamilyGENE3D1.10.60.20coord: 1..62
e-value: 4.5E-32
score: 111.4
IPR036401Ribosomal protein S17e-like superfamilySUPERFAMILY116820Rps17e-likecoord: 1..62
NoneNo IPR availablePANTHERPTHR10732:SF1340S RIBOSOMAL PROTEIN S17-4coord: 1..136
IPR018273Ribosomal protein S17e, conserved sitePROSITEPS00712RIBOSOMAL_S17Ecoord: 41..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g10560.1Cp4.1LG13g10560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome