Cp4.1LG13g10370 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g10370
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG13: 7048638 .. 7050329 (+)
RNA-Seq Expression	Cp4.1LG13g10370
Synteny	Cp4.1LG13g10370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGATCACTATGTCGCTTCATCGGCTTCGCGATCTGGTTATTGGCCGCCGCTTGCTCTCTTCTCTGAGCTCCTTAGAGCTTTCCATTCGTCTTCATCTATCTCCTCCAGATACATCTCTCGGTATCACTTTTTGACTGAATATTTGTTTGATTTTAGTTTCTTATTATATGTTCGATCTTTTTGGTTGAAGTTGTTTTTAATTTCTACACTGCCTCCTTTTTATTTCTGTATGGATTTAGTAAGTGGTTGTTGTGAGAGATTTGATATTCTGATTCATTTTGCGCGAAATTTCGTTTGATTGAGTGTTTTAAAATGTCAAATGTCAGTTTGGTTTAATGGTGGAGGAACCGTTGAGGAAGAGTCTCAAAATTGTTGAAATTGTGTTTTTTGTGTTCTTCTCAATTTCTTGTTTCATTTATTTGTGAGGCCTATGGACTGCCGATTCGAACACAAAGGATCTTGACGATTTAAGAGTAGTTAAGCAAGTATTTGCCTTCCACCACATTGCCTAATGCGCATCATTTCTATGAATTAGCTGGGAATTATTGGACACATGAATGTTGTTTTCATAATTGGTACTTGCCTTGCCACTACTCAGGCAACTACCCCTGTTGGTGAGAAATTACGAACTTCCACAACGGTATGATATTGTCCACTTTGAGCATAAACTCTAATGACTGTCTCTAGTTTCCCCAAAAGTCTTCGTATCAATGAACTTGTATTCCTTACTTGTAATCTCATGATCAATTCCTTTATTAGTCGACATGGGACTCCTCTCCCAACCATCCTCATCATTGTCATCAAGTAAAAAGTAGACAGAAAAGATTAAGGATATGGATAGAACTCCTAGAAATCAAGGCCTCAATTGGACAATTAAAACATGATGGGTTTGTCCTGCTTTTCCCATGGCAGTCGGCGCCTATCAATTTGTAAATTTGGTGGCCAATGTTACTGCTTCCATCAAATACCCCAAATGTTGGAGCTTCACCTTTTCTAGGATATACATATATACATATATATGTATGTATATCGTACAAATCGATCACCATCTTATAATCTTGTGATTCAAAACTGTGGTGTGGGTTGTGGAACACTCCTTGTTGTTCAAAGACTGGTTGTTGTTGAAGAAAGGTCTCTTCCTGACAAGAATCAAAATCTTGGAAGGGTAATCTTGCATATGTTCTTGCAGCCAATTATTGGGGAGTTTTATTTGGCGTTCTCTGAAGGTTAGTCTCTGTTCTTGGAGCATTCTTGCTGTTTATTCATGTTGCCCTTCTTCTTTTTGGATGAGGATTATTATCATTTCTTCCATTTATTTCCCCACCAATCTCATTTCAATTCTTTCTAATTGTTCAGCTATTGTTTCCAGAATGTGTTTAGTTTTGGAGAACAAATTGTTGGTGGAGTTGTGGACTCCAAACTGGATTGATCCGTGTCGATTTTGTGAGGCCTTGACAACCTTCCTTCCCACCATTAGGTCCTCTGTCATGAAAAAGGTCTGATATCAAAGATGATAATCTTAATGGGGAAGCATGGAAGGGAGGGTATTTATACCACTCGAATGGTACTTGTTCAAGAACATAAGTAACCTATGTAGATATACCCGAATGGTTGCTTTAGAACACAAGTAACCTATGTATGTAGATAACTGGTTGTAACTAACAATAACCTGTACAAACTTGTGTAGATA

mRNA sequence

GAGGATCACTATGTCGCTTCATCGGCTTCGCGATCTGGTTATTGGCCGCCGCTTGCTCTCTTCTCTGAGCTCCTTAGAGCTTTCCATTCGTCTTCATCTATCTCCTCCAGATACATCTCTCGACTGGTTGTTGTTGAAGAAAGGTCTCTTCCTGACAAGAATCAAAATCTTGGAAGGGTAATCTTGCATATGTTCTTGCAGCCAATTATTGGGGAGTTTTATTTGGCGTTCTCTGAAGCTATTGTTTCCAGAATGTGTTTAGTTTTGGAGAACAAATTGTTGGTGGAGTTGTGGACTCCAAACTGGATTGATCCGTGTCGATTTTGTGAGGCCTTGACAACCTTCCTTCCCACCATTAGGTCCTCTGTCATGAAAAAGGTCTGATATCAAAGATGATAATCTTAATGGGGAAGCATGGAAGGGAGGGTATTTATACCACTCGAATGGTACTTGTTCAAGAACATAAGTAACCTATGTAGATATACCCGAATGGTTGCTTTAGAACACAAGTAACCTATGTATGTAGATAACTGGTTGTAACTAACAATAACCTGTACAAACTTGTGTAGATA

Coding sequence (CDS)

GAGGATCACTATGTCGCTTCATCGGCTTCGCGATCTGGTTATTGGCCGCCGCTTGCTCTCTTCTCTGAGCTCCTTAGAGCTTTCCATTCGTCTTCATCTATCTCCTCCAGATACATCTCTCGACTGGTTGTTGTTGAAGAAAGGTCTCTTCCTGACAAGAATCAAAATCTTGGAAGGGTAATCTTGCATATGTTCTTGCAGCCAATTATTGGGGAGTTTTATTTGGCGTTCTCTGAAGCTATTGTTTCCAGAATGTGTTTAGTTTTGGAGAACAAATTGTTGGTGGAGTTGTGGACTCCAAACTGGATTGATCCGTGTCGATTTTGTGAGGCCTTGACAACCTTCCTTCCCACCATTAGGTCCTCTGTCATGAAAAAGGTCTGA

Protein sequence

EDHYVASSASRSGYWPPLALFSELLRAFHSSSSISSRYISRLVVVEERSLPDKNQNLGRVILHMFLQPIIGEFYLAFSEAIVSRMCLVLENKLLVELWTPNWIDPCRFCEALTTFLPTIRSSVMKKV

Homology

[Close]

BLAST of Cp4.1LG13g10370 vs. NCBI nr
Match: XP_023550788.1 (uncharacterized protein LOC111808822 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.5 bits (197), Expect = 7.63e-16
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 39 ISRLVVVEERSLPDKNQNLGRVILHMFLQPIIGEFYLAFSE 79
          + RLVVVEERSLPDKNQNLGRVILHMFLQPIIGEFYLAFSE
Sbjct: 29 VQRLVVVEERSLPDKNQNLGRVILHMFLQPIIGEFYLAFSE 69

[Close]

BLAST of Cp4.1LG13g10370 vs. NCBI nr
Match: XP_023550786.1 (uncharacterized protein LOC111808822 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.5 bits (197), Expect = 1.03e-15
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 39 ISRLVVVEERSLPDKNQNLGRVILHMFLQPIIGEFYLAFSE 79
          + RLVVVEERSLPDKNQNLGRVILHMFLQPIIGEFYLAFSE
Sbjct: 29 VQRLVVVEERSLPDKNQNLGRVILHMFLQPIIGEFYLAFSE 69

[Close]

BLAST of Cp4.1LG13g10370 vs. NCBI nr
Match: KAG6578784.1 (hypothetical protein SDJN03_23232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 3.08e-08
Identity = 32/41 (78.05%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1   EDHYVASSASRSGYWPPLALFSELLRAFHSSSSISSRYISR 41
           EDHYVASSASRSGYWP L      L AFHSSSSISS YISR
Sbjct: 299 EDHYVASSASRSGYWPRLLSSLRSLGAFHSSSSISSGYISR 339

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g10370 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g10370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550788.1	7.63e-16	95.12	uncharacterized protein LOC111808822 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023550786.1	1.03e-15	95.12	uncharacterized protein LOC111808822 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6578784.1	3.08e-08	78.05	hypothetical protein SDJN03_23232, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG13g10370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g10370 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g10370.1	Cp4.1LG13g10370.1	mRNA