Cp4.1LG13g09580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g09580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L35
Location	Cp4.1LG13: 7378925 .. 7380620 (-)
RNA-Seq Expression	Cp4.1LG13g09580
Synteny	Cp4.1LG13g09580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGATTTATTGGGCCGGAACAGTTGAGTGGGCTTAAATCCACCCTTATTTTCAGGCTCAAAAGGGCAAATTTGGCATTTCGTAAATGGTACTTAACTCCCTTCTCTTTGAAAACCCTAGTCTTCTCAATAGCAGCTCTTTCACCAGGTTCCCATCTTCTCTTCTAGGGTTTTGCCGAGGCGGCGTGGAGTAGAAGAGCACTCGAGAAGAAATGGGTAGGTTTTCTGTCAGATCTTCTCATAAACGAAATTAAACATACTCAATTCGCTTTTGGCTCTCTAATTCTTCGAGGATAATGATGAATTTTTTGTTATTCAATTTGGTGTTTTCGGTTTGTAGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAATCGAAGGTGGATCTGTTGACGCAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCCAAAGTCACCGGCGGTGCCCCGAACAAGTTATCCAAAATGTAATTCCTTTTTCTTTTAATTATTTTTATTTTTTCCCGTGATACGTCTCATTCTTTTGTTGACCTTGTTGTTCTGTATGGTTGATTTTGCAGCAAGGTAGTGAGATTGTCGATTGCTCAAGTCCTGACAGTGATTTCCCAGAAGCAGAAGGCGGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTCCTGCCTCTGGATCTGCGCCCAAAGAAGACGAGGGCCATTCGTAGGAAGCTCACCAAGCACCAAGTAATTATTTCATCTTGATATTACTTTCAGTACAGCGTGATTTTGTGTGTTCGTCTCTTAACTGTTTTCTGGCCCTAGTATGGATTATATTCTTAAATGTTGACAATGTCTGTGCATGATACCGTTGAGATTTTCTACGTTGCCAAAAAAGAGTTTCAAACTACTTGTTGCCTATTGGTTTGGATGAGAAACAGTAAAGAATTGAATTGGGAAGGAAATGCCATTGAACTTGTACAAGAGTAGTGGATGGGTTTTTTGCTAGTTTCAAAACCTTGATATCTGAAGTTGAACGAAGTATTTTAGGTCCTGCTTGATAACAATTTCATTTCTAATCATGGTTTTGGAATTTCGTTTGTTTCCTCTCAATTTCATTTCGTTTGTAGAACATATACAGAGTGGATAACAAACTAAATAAAGGAACTTACCTCTTGTTTTATAAGCTTAATTGACTAAAACCAAAGTCAAATAAGCAAACGATCATCAAACGAAGCCTTGATTAATTAGAATTATGGTTTCTTAACCAAGTCTTCAAGTAATGCTGTAGAATTGGTTAGGTATGTGGATGATACCATCTGATTCCTTTTCTAATCACTTTCTTGATGCAATTGTAATACTATGAACCATTTCTTTCTCTTTTGAGTATGGTTTCAACAATTTTGTTGAATGATTCCATTGTATGATGCAGGCTTCTTTGAAAACAGAGAGAGAGAAGAAGAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAGTAATATTCGGTAGTCATTTTATTATGCAACGGCAGACCAATTTTGTTGACAAGTTTTGTCTCGTATTCTTGATAAGCTTATGTCTGATTCTCTTGGGGCTTTCCCCTCCTAAACCAAGCTGTTCTATTTTCATTGACAATTATATATTTGAGAGTTTAGCGTTTTTTCTTCATGTTTTTTGAACTTATTTTTAAGTTCATTCTACTTTAAGC

mRNA sequence

TGGATTTATTGGGCCGGAACAGTTGAGTGGGCTTAAATCCACCCTTATTTTCAGGCTCAAAAGGGCAAATTTGGCATTTCGTAAATGGTACTTAACTCCCTTCTCTTTGAAAACCCTAGTCTTCTCAATAGCAGCTCTTTCACCAGGTTCCCATCTTCTCTTCTAGGGTTTTGCCGAGGCGGCGTGGAGTAGAAGAGCACTCGAGAAGAAATGGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAATCGAAGGTGGATCTGTTGACGCAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCCAAAGTCACCGGCGGTGCCCCGAACAAGTTATCCAAAATCAAGGTAGTGAGATTGTCGATTGCTCAAGTCCTGACAGTGATTTCCCAGAAGCAGAAGGCGGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTCCTGCCTCTGGATCTGCGCCCAAAGAAGACGAGGGCCATTCGTAGGAAGCTCACCAAGCACCAAGCTTCTTTGAAAACAGAGAGAGAGAAGAAGAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAGTAATATTCGGTAGTCATTTTATTATGCAACGGCAGACCAATTTTGTTGACAAGTTTTGTCTCGTATTCTTGATAAGCTTATGTCTGATTCTCTTGGGGCTTTCCCCTCCTAAACCAAGCTGTTCTATTTTCATTGACAATTATATATTTGAGAGTTTAGCGTTTTTTCTTCATGTTTTTTGAACTTATTTTTAAGTTCATTCTACTTTAAGC

Coding sequence (CDS)

ATGGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAATCGAAGGTGGATCTGTTGACGCAGCTTAAGGATCTTAAGGCGGAGCTTTCTCTCCTTCGAGTCGCCAAAGTCACCGGCGGTGCCCCGAACAAGTTATCCAAAATCAAGGTAGTGAGATTGTCGATTGCTCAAGTCCTGACAGTGATTTCCCAGAAGCAGAAGGCGGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTCCTGCCTCTGGATCTGCGCCCAAAGAAGACGAGGGCCATTCGTAGGAAGCTCACCAAGCACCAAGCTTCTTTGAAAACAGAGAGAGAGAAGAAGAAGGAGATGTACTATCCATTGAGGAAATATGCTATTAAGGTGTAG

Protein sequence

MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYAIKV

Homology

[Close]

BLAST of Cp4.1LG13g09580 vs. ExPASy Swiss-Prot
Match: Q9M5L0 (60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.2e-50
Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQK+K +LL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRR+LTKHQ SLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. ExPASy Swiss-Prot
Match: O80626 (60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-49
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. ExPASy Swiss-Prot
Match: Q9LZ41 (60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-49
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. ExPASy Swiss-Prot
Match: Q9SF53 (60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-49
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. ExPASy Swiss-Prot
Match: Q9M3D2 (60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-48
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. NCBI nr
Match: XP_023549703.1 (60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220 bits (560), Expect = 9.10e-72
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. NCBI nr
Match: XP_022939961.1 (60S ribosomal protein L35 [Cucurbita moschata] >XP_022957446.1 60S ribosomal protein L35 [Cucurbita moschata] >XP_022991739.1 60S ribosomal protein L35 [Cucurbita maxima] >XP_022993735.1 60S ribosomal protein L35 [Cucurbita maxima] >XP_023523288.1 60S ribosomal protein L35 [Cucurbita pepo subsp. pepo] >KAG6578726.1 60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016256.1 60S ribosomal protein L35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217 bits (553), Expect = 1.06e-70
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. NCBI nr
Match: KAG7031634.1 (60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217 bits (553), Expect = 2.27e-70
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 24  MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 83

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 84  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 143

Query: 121 IKV 123
           IKV
Sbjct: 144 IKV 146

[Close]

BLAST of Cp4.1LG13g09580 vs. NCBI nr
Match: XP_022134532.1 (60S ribosomal protein L35 [Momordica charantia])

HSP 1 Score: 213 bits (543), Expect = 3.56e-69
Identity = 118/123 (95.93%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTER+KKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. NCBI nr
Match: XP_022923169.1 (60S ribosomal protein L35-like [Cucurbita moschata] >KAG7033027.1 60S ribosomal protein L35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213 bits (543), Expect = 3.56e-69
Identity = 119/123 (96.75%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASL TER+KKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. ExPASy TrEMBL
Match: A0A6J1JVN4 (60S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111488270 PE=3 SV=1)

HSP 1 Score: 217 bits (553), Expect = 5.15e-71
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. ExPASy TrEMBL
Match: A0A6J1FH81 (60S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111445667 PE=3 SV=1)

HSP 1 Score: 217 bits (553), Expect = 5.15e-71
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. ExPASy TrEMBL
Match: A0A6J1BZV3 (60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV=1)

HSP 1 Score: 213 bits (543), Expect = 1.72e-69
Identity = 118/123 (95.93%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTER+KKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. ExPASy TrEMBL
Match: A0A6J1E5L3 (60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111430917 PE=3 SV=1)

HSP 1 Score: 213 bits (543), Expect = 1.72e-69
Identity = 119/123 (96.75%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASL TER+KKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLVTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. ExPASy TrEMBL
Match: A0A0A0KQT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505200 PE=3 SV=1)

HSP 1 Score: 212 bits (540), Expect = 4.94e-69
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQASLKTER+KKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TAIR 10
Match: AT2G39390.1 (Ribosomal L29 family protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-50
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TAIR 10
Match: AT5G02610.1 (Ribosomal L29 family protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-50
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TAIR 10
Match: AT3G09500.1 (Ribosomal L29 family protein )

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-50
Identity = 110/123 (89.43%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TAIR 10
Match: AT3G55170.1 (Ribosomal L29 family protein )

HSP 1 Score: 193.7 bits (491), Expect = 8.5e-50
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Cp4.1LG13g09580 vs. TAIR 10
Match: AT3G55170.2 (Ribosomal L29 family protein )

HSP 1 Score: 193.7 bits (491), Expect = 8.5e-50
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKVDLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRKLTKHQASLKTEREKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRR+LTKHQASLKTEREKKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g09580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5L0	2.2e-50	90.24	60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1	[more]
O80626	1.4e-49	89.43	60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1	[more]
Q9LZ41	1.8e-49	89.43	60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1	[more]
Q9SF53	2.4e-49	89.43	60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1	[more]
Q9M3D2	1.2e-48	88.62	60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1	[more]

BLAST of Cp4.1LG13g09580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549703.1	9.10e-72	100.00	60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo]	[more]
XP_022939961.1	1.06e-70	98.37	60S ribosomal protein L35 [Cucurbita moschata] >XP_022957446.1 60S ribosomal pro...	[more]
KAG7031634.1	2.27e-70	98.37	60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022134532.1	3.56e-69	95.93	60S ribosomal protein L35 [Momordica charantia]	[more]
XP_022923169.1	3.56e-69	96.75	60S ribosomal protein L35-like [Cucurbita moschata] >KAG7033027.1 60S ribosomal ...	[more]

BLAST of Cp4.1LG13g09580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVN4	5.15e-71	98.37	60S ribosomal protein L35 OS=Cucurbita maxima OX=3661 GN=LOC111488270 PE=3 SV=1	[more]
A0A6J1FH81	5.15e-71	98.37	60S ribosomal protein L35 OS=Cucurbita moschata OX=3662 GN=LOC111445667 PE=3 SV=...	[more]
A0A6J1BZV3	1.72e-69	95.93	60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV...	[more]
A0A6J1E5L3	1.72e-69	96.75	60S ribosomal protein L35-like OS=Cucurbita moschata OX=3662 GN=LOC111430917 PE=...	[more]
A0A0A0KQT2	4.94e-69	95.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505200 PE=3 SV=1	[more]

BLAST of Cp4.1LG13g09580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39390.1	1.0e-50	89.43	Ribosomal L29 family protein	[more]
AT5G02610.1	1.3e-50	89.43	Ribosomal L29 family protein	[more]
AT3G09500.1	1.7e-50	89.43	Ribosomal L29 family protein	[more]
AT3G55170.1	8.5e-50	88.62	Ribosomal L29 family protein	[more]
AT3G55170.2	8.5e-50	88.62	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 1..77 e-value: 9.1E-36 score: 124.1
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 4..65
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 8..64 e-value: 4.8E-17 score: 61.7
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 8..64 e-value: 1.8E-17 score: 61.1
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 4..64 score: 12.540656
None	No IPR available	GENE3D	6.10.250.3450		coord: 78..123 e-value: 1.3E-21 score: 78.6
None	No IPR available	PANTHER	PTHR45722:SF18	60S RIBOSOMAL PROTEIN L35-LIKE	coord: 1..123
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 8..64 e-value: 1.61388E-10 score: 50.9491
IPR045059	60S ribosomal protein L35	PANTHER	PTHR45722	60S RIBOSOMAL PROTEIN L35	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g09580.1	Cp4.1LG13g09580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome