Cp4.1LG13g09530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g09530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description50S ribosomal protein L23, chloroplastic
LocationCp4.1LG13: 7389373 .. 7391667 (-)
RNA-Seq ExpressionCp4.1LG13g09530
SyntenyCp4.1LG13g09530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGTATACACACCGGTTACCGCTTTGCGCGAGTGGATGTGTATTTACAAAACCCTAATATATAAGGCACATCGTCTTCTCCCCCGCTGAAACCTAGCCTTTCCGATTGCAGCTGTTCGTCCGTGTAAGATCTTTTTTTCGCTTCACTTCCTCTCAGACTCTCGATGCATGTTTTTTCTTCTTGTATCTAGGGTTAGGGTTGGGGTTACAATCGATGCCATTAGTTCGATTCGTATGAGATTTACTCGCTTTTTCACTTGGCAATTAGTTGCTAGTTTTCTCCACTCGTTGATATCTATGTCCGTTTTTTGTGCCACGAACAGGTCGGAGTAGCGATTAGGTAGAGGACTTTGCAATGGCTCCGAAAGGTAAGTTTATCAATTTATACATTGAACAGTTATCGATTACTCGTTTTTATAAAAATCTCTTGCATTTATAGTTGCATAGGACATTCAAATTATTTTCCGTGCTATCTCATTCCTCATGACTGCCGTTCGATATTTATTCTGTACGCGATTTGGATCTCTAGACTCAGTTGTTGAAAACATTTGAGCTTCGAATTTAAAAGAAGCAGATAATTGCAAAATTGAAACGACAAGATCTGAATAGCCTGTTTAGAATTTAGTCCACGGGCTACTAACTTCATAGAATCGCACGATCGAAAAATTTGCCTGAATCACTCTGCTTCACTATTTTTTCTTTCACCGTTGTCGAAAGTAGAAAAATGGTGATTATATTGTTAGTATGAATATCATTTTTACGAACTATGTGAGAATGCTCGTAGGATTTATAGAAGAGATAGGCATTGACAATTTACACATATAGGAAGGATTAGTTTTGAGCAAATAAACGAGCCAGGCTTGATATTTCTTTTCCCTCTCAGCTGACATCACCAAAAAGGCTGACCCTAAGGCACAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGTCCAACATTTAAGAAGAAAGCGAAGAAAATCAGAACGTCTGTCACATTTCACCGTCCTAAGACATTGAAGAAGGAAAGAAATCCCAAGTATCCACGTATTAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAGATTCTTAAATACCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAGGACAATAATACTTTGGTTTTCATTGTCGACATTCGTGCTGATAAGAAGAAGATTAAGGATGCCGTGAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACGTTGATCAGGTAAAATCTTAATCAAACATTCCTATGGTTTCTTCTTAGAATATTATTGAATTGGGTTCTTCCCGGATATGATCTCAATCTTAAATAATCCATCATCTTGTGGAAGTTTCTTGTTATCATTCTTAGAGCCGACTTATCAATGAAATTAATGGCTGCAATGATTATCATAAAATGTTCACACTGACAACGTTGCTTGCTTTTATCCAATGATTGCAGGCCTGATGGAACCAAGAAGGCATATGTAAGGCTGACTCCCGACTATGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAAGGCTTTCGTTTTTGTTTGAGAAAATTGATTATCTTTCGCAGTGACAATTTTGATTTATGGAATGACCTCCATTTTCTCTAGCAATCAGTAAGTTGTTTTTCACCAAGCTGCCGCAACGCTTGTTGGCTTGTGAATGGTAGGGTTTGTGGTTGAATGTAATAGAAGTCTGCATTTCTTTACTTCACCTATTTTCCTCATTTCCACTAACAATATGATCTGAAGACTGGTTTTTCATGATCCCTGCTTTCGTCTCCCACCCAAGAATTTTACCAACTTTTCTGGATTTCTGGTCATAATCATAAATTTTAGTTCCTTTTGAGATTTTGATTTTCTTCCTTAAACCTGTAAGACTGTTGTCCACGAGCCACTGTCAATATCAAGATTTGTATAATTTCTTAATTTTTCAATGAGTCTTCACACAATTTGTCAGGAATTTAAGTAAAACTGTCGTTACAAGGTGTTGTAATTCCTGTAAGCTCGAATGTTGATGAAATTAATTAATGAACAAAAGGGTGGATAAGTTACAGAAGTTTAAGCTGTAAACAACCTGAGAGAATCTAAATTAATGATAAACGTGTTCACATGGGAGCCCCGTCAAACTTTTGAAATTGTGAAGGAATCGACGACCGTGCGCAATTTATCTTTCATTTTCTCCCACCTCCTCTCATTTGCTCCGGTTGTCAAAGTGTAGAATTTTCCTGCCATTGAAAAGATAAAAAAGAGCTTTGTTAGGAATCTCAGTTGAT

mRNA sequence

AAAAGTATACACACCGGTTACCGCTTTGCGCGAGTGGATGTGTATTTACAAAACCCTAATATATAAGGCACATCGTCTTCTCCCCCGCTGAAACCTAGCCTTTCCGATTGCAGCTGTTCGTCCGTGTCGGAGTAGCGATTAGGTAGAGGACTTTGCAATGGCTCCGAAAGCTGACATCACCAAAAAGGCTGACCCTAAGGCACAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGTCCAACATTTAAGAAGAAAGCGAAGAAAATCAGAACGTCTGTCACATTTCACCGTCCTAAGACATTGAAGAAGGAAAGAAATCCCAAGTATCCACGTATTAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAGATTCTTAAATACCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAGGACAATAATACTTTGGTTTTCATTGTCGACATTCGTGCTGATAAGAAGAAGATTAAGGATGCCGTGAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACGTTGATCAGGCCTGATGGAACCAAGAAGGCATATGTAAGGCTGACTCCCGACTATGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAAGGCTTTCGTTTTTGTTTGAGAAAATTGATTATCTTTCGCAGTGACAATTTTGATTTATGGAATGACCTCCATTTTCTCTAGCAATCAGTAAGTTGTTTTTCACCAAGCTGCCGCAACGCTTGTTGGCTTGTGAATGGTAGGGTTTGTGGTTGAATGTAATAGAAGTCTGCATTTCTTTACTTCACCTATTTTCCTCATTTCCACTAACAATATGATCTGAAGACTGGTTTTTCATGATCCCTGCTTTCGTCTCCCACCCAAGAATTTTACCAACTTTTCTGGATTTCTGGTCATAATCATAAATTTTAGTTCCTTTTGAGATTTTGATTTTCTTCCTTAAACCTGTAAGACTGTTGTCCACGAGCCACTGTCAATATCAAGATTTGTATAATTTCTTAATTTTTCAATGAGTCTTCACACAATTTGTCAGGAATTTAAGTAAAACTGTCGTTACAAGGTGTTGTAATTCCTGTAAGCTCGAATGTTGATGAAATTAATTAATGAACAAAAGGGTGGATAAGTTACAGAAGTTTAAGCTGTAAACAACCTGAGAGAATCTAAATTAATGATAAACGTGTTCACATGGGAGCCCCGTCAAACTTTTGAAATTGTGAAGGAATCGACGACCGTGCGCAATTTATCTTTCATTTTCTCCCACCTCCTCTCATTTGCTCCGGTTGTCAAAGTGTAGAATTTTCCTGCCATTGAAAAGATAAAAAAGAGCTTTGTTAGGAATCTCAGTTGAT

Coding sequence (CDS)

ATGGCTCCGAAAGCTGACATCACCAAAAAGGCTGACCCTAAGGCACAAGCCTTGAAAACTGCCAAGGCAGTAAAATCGGGTCCAACATTTAAGAAGAAAGCGAAGAAAATCAGAACGTCTGTCACATTTCACCGTCCTAAGACATTGAAGAAGGAAAGAAATCCCAAGTATCCACGTATTAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAGATTCTTAAATACCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAGGACAATAATACTTTGGTTTTCATTGTCGACATTCGTGCTGATAAGAAGAAGATTAAGGATGCCGTGAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACGTTGATCAGGCCTGATGGAACCAAGAAGGCATATGTAAGGCTGACTCCCGACTATGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAA

Protein sequence

MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Homology
[Close]
BLAST of Cp4.1LG13g09530 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.7e-68
Identity = 140/154 (90.91%), Postives = 146/154 (94.81%), Query Frame = 0 

Query: 1   MAP-KADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL K+RNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Cp4.1LG13g09530 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.2e-67
Identity = 138/154 (89.61%), Postives = 144/154 (93.51%), Query Frame = 0 

Query: 1   MAP-KADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           MAP KAD +KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKK+RNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA  RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Cp4.1LG13g09530 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 7.1e-67
Identity = 138/154 (89.61%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 1   MAP-KADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Cp4.1LG13g09530 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 7.1e-67
Identity = 138/154 (89.61%), Postives = 142/154 (92.21%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           MAP A + KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKK+RNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of Cp4.1LG13g09530 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-66
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 1   MAP-KADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Cp4.1LG13g09530 vs. NCBI nr
Match: XP_022993268.1 (60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal protein L23a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290 bits (741), Expect = 2.12e-98
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Cp4.1LG13g09530 vs. NCBI nr
Match: XP_022939581.1 (60S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016253.1 60S ribosomal protein L23a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289 bits (739), Expect = 4.28e-98
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Cp4.1LG13g09530 vs. NCBI nr
Match: XP_008463516.1 (PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal protein L23a [Cucumis melo var. makuwa])

HSP 1 Score: 286 bits (731), Expect = 7.11e-97
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Cp4.1LG13g09530 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia])

HSP 1 Score: 286 bits (731), Expect = 7.11e-97
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Cp4.1LG13g09530 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 285 bits (728), Expect = 2.04e-96
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD +KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Cp4.1LG13g09530 vs. ExPASy TrEMBL
Match: A0A6J1K1Q8 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489334 PE=3 SV=1)

HSP 1 Score: 290 bits (741), Expect = 1.03e-98
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Cp4.1LG13g09530 vs. ExPASy TrEMBL
Match: A0A6J1FGB6 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445434 PE=3 SV=1)

HSP 1 Score: 289 bits (739), Expect = 2.07e-98
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Cp4.1LG13g09530 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 286 bits (731), Expect = 3.44e-97
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Cp4.1LG13g09530 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 286 bits (731), Expect = 3.44e-97
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Cp4.1LG13g09530 vs. ExPASy TrEMBL
Match: A0A1S3CJE6 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656 PE=3 SV=1)

HSP 1 Score: 286 bits (731), Expect = 3.44e-97
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Cp4.1LG13g09530 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-68
Identity = 138/154 (89.61%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 1   MAP-KADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Cp4.1LG13g09530 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-68
Identity = 138/154 (89.61%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 1   MAP-KADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Cp4.1LG13g09530 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 253.8 bits (647), Expect = 8.6e-68
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 1   MAP-KADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Cp4.1LG13g09530 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 253.8 bits (647), Expect = 8.6e-68
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 1   MAP-KADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Cp4.1LG13g09530 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 242.7 bits (618), Expect = 2.0e-64
Identity = 133/154 (86.36%), Postives = 137/154 (88.96%), Query Frame = 0 

Query: 1   MAP-KADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g09530 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9AT351.7e-6890.9160S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1[more]
Q077614.2e-6789.6160S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1[more]
Q8LD467.1e-6789.6160S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... [more]
O226447.1e-6789.6160S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1[more]
Q9M3C31.2e-6688.9660S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... [more]
BLAST of Cp4.1LG13g09530 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022993268.12.12e-98100.0060S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal... [more]
XP_022939581.14.28e-9899.3560S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal prot... [more]
XP_008463516.17.11e-9798.69PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal p... [more]
XP_022154290.17.11e-9798.6960S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal p... [more]
XP_022995723.12.04e-9698.0460S ribosomal protein L23a [Cucurbita maxima][more]
BLAST of Cp4.1LG13g09530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K1Q81.03e-98100.0050S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1FGB62.07e-9899.3550S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1DJ763.44e-9798.6950S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5D3C5W33.44e-9798.6950S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3CJE63.44e-9798.6950S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656... [more]
BLAST of Cp4.1LG13g09530 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39460.15.0e-6889.61ribosomal protein L23AA [more]
AT2G39460.25.0e-6889.61ribosomal protein L23AA [more]
AT3G55280.18.6e-6888.96ribosomal protein L23AB [more]
AT3G55280.28.6e-6888.96ribosomal protein L23AB [more]
AT3G55280.32.0e-6486.36ribosomal protein L23AB [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 14..62
e-value: 2.2E-18
score: 66.2
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 34..153
e-value: 3.8E-53
score: 180.7
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 73..135
e-value: 1.6E-14
score: 54.0
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 1..153
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 73..153
score: 22.356056
IPR019985Ribosomal protein L23TIGRFAMTIGR03636TIGR03636coord: 77..153
e-value: 5.0E-29
score: 98.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR11620:SF7860S RIBOSOMAL PROTEIN L23A-2coord: 1..153
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 131..146
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 71..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g09530.1Cp4.1LG13g09530.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome