Cp4.1LG13g09510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g09510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG13: 7493476 .. 7494870 (+)
RNA-Seq ExpressionCp4.1LG13g09510
SyntenyCp4.1LG13g09510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTTCACTTCCAGCTCTGCACGATGACGACAACAACAGGTAACTCGTTTCTAGCTACTAGATAGACAAGAAGATCCGAACCGGTTCGGTTGGATCGTTTTCGGCATTGCTTTGATTTTGATCGAAGATTTGGGGAATGGACGATCGGTTTCTAACTGCTTGCGCATTGTTTGAAATGCATGATGCTCTGCCGATTTTACTTTCATTAGTTCCTCCATTCTCAGAAGATTCGGGGATGAGTTACATCGTTTTCGTATTTGTGTGGATGAAATTTGGTTAACCTTTTTATTTTTGGAAAAATTCTGTAACCTAGTTTATCAATCTCTGTTCATATGTAAATTGATAGGGGAACAAAAATGTTAAAACAAAATAGTGTAGTGTAATCCATTGATAATGAAGAAGCAAAACATTACTATGAGTCTATGATCTGTTTATTTGCAGGCACACAATCGAAATTCAATCATAGAATTATTACAATCAGCTTGGCAAAGAAGTTTCATTCAAATAGCTCGGCAAAGAGGGAGGCCAGAATCGAGACGGGATCCCCAACAACGATACTTACGATTGTCTTGATCAAGATCTTGAGGATTTTGAGAATCTTTTTACATCCTCTCTTCCGACGACTAATTTCTTTCAGCTGCATCTTAATCTTCATCTTCACAACGAGATATTGTCCGGCAGTGTTTTCTCCGCTCCTGTCCAATTCATCAACAACCATATCAATAACACAATCCACATCAACATGGTACTCCCTGCACTTTGCGCATTTCTCCATATTCATTTCTCTGTGTTGCCTTGGAAAGAACAAAGAAACAAGAACAATTCTGTGTGCTGCAGGGAAAAGATCAGAGAGCAGAGAAGAGATTTGAGAATATGCAGAATGGGATGTGTGGCATATTTAATGAGCATATGATCTTCAGCTACTTTTCTCCGACTCCATGCATTGACATTCCATATGAATTTGAACGAAATTCCTCTAACACTGGTACGCGCTACACTTCTCTTCCGCTTCTAGAACTTCCTCCTCACGTTGACCTACGTTTATGTTTAATGCTACTTTATATTTCTTTAATGGGGTTTATTTATATAATCTGTGTTTTGATTCAAATTTCACTCAATATTACAATAATATTTAGTAGACAACACGACTCTTCACAATGGTATGATATTGTCTTGTCTACTCTCATGGCTTTGCTTTGGGCTCCAAAAGGTCTCATATCAATGAAGAGTGTATTCGGAGTTAAATAGACATCTATAAATAAAATTCAAACTAATACTCCTCATTGTATTACTTTGGAAATGAGACATTTATAAATTTTCTATAAATGTCCTGGGTTTTAGAAATGAGAGTCGTTGGAATTGGAATAGGACCCATCGACACAGACATTTAA

mRNA sequence

ATGGGACTCGGCAAAGAGGGAGGCCAGAATCGAGACGGGATCCCCAACAACGATACTTACGATTGTCTTGATCAAGATCTTGAGGATTTTGAGAATCTTTTTACATCCTCTCTTCCGACGACTAATTTCTTTCAGCTGCATCTTAATCTTCATCTTCACAACGAGATATTGTCCGGCAGTGTTTTCTCCGCTCCTGTCCAATTCATCAACAACCATATCAATAACACAATCCACATCAACATGGGAAAAGATCAGAGAGCAGAGAAGAGATTTGAGAATATGCAGAATGGGATGTGTGGCATATTTAATGAGCATATGATCTTCAGCTACTTTTCTCCGACTCCATGCATTGACATTCCATATGAATTTGAACGAAATTCCTCTAACACTGGTACGCGCTACACTTCTCTTCCGCTTCTAGAACTTCCTCCTCACGTTGACCTACAAATGAGAGTCGTTGGAATTGGAATAGGACCCATCGACACAGACATTTAA

Coding sequence (CDS)

ATGGGACTCGGCAAAGAGGGAGGCCAGAATCGAGACGGGATCCCCAACAACGATACTTACGATTGTCTTGATCAAGATCTTGAGGATTTTGAGAATCTTTTTACATCCTCTCTTCCGACGACTAATTTCTTTCAGCTGCATCTTAATCTTCATCTTCACAACGAGATATTGTCCGGCAGTGTTTTCTCCGCTCCTGTCCAATTCATCAACAACCATATCAATAACACAATCCACATCAACATGGGAAAAGATCAGAGAGCAGAGAAGAGATTTGAGAATATGCAGAATGGGATGTGTGGCATATTTAATGAGCATATGATCTTCAGCTACTTTTCTCCGACTCCATGCATTGACATTCCATATGAATTTGAACGAAATTCCTCTAACACTGGTACGCGCTACACTTCTCTTCCGCTTCTAGAACTTCCTCCTCACGTTGACCTACAAATGAGAGTCGTTGGAATTGGAATAGGACCCATCGACACAGACATTTAA

Protein sequence

MGLGKEGGQNRDGIPNNDTYDCLDQDLEDFENLFTSSLPTTNFFQLHLNLHLHNEILSGSVFSAPVQFINNHINNTIHINMGKDQRAEKRFENMQNGMCGIFNEHMIFSYFSPTPCIDIPYEFERNSSNTGTRYTSLPLLELPPHVDLQMRVVGIGIGPIDTDI
Homology
[Close]
BLAST of Cp4.1LG13g09510 vs. NCBI nr
Match: KAG6578701.1 (hypothetical protein SDJN03_23149, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.5 bits (127), Expect = 2.58e-05
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 3   LGKEGGQNRDGIPNNDTYDCLDQDLEDFENLFTSS--LPTTNFF 44
           L KE GQNR GIP NDT D LD+DLED ++L T S  LPT NFF
Sbjct: 130 LDKEAGQNRGGIPKNDTNDGLDEDLEDSQHLVTFSAFLPTANFF 173

[Close]
BLAST of Cp4.1LG13g09510 vs. NCBI nr
Match: KAG6578703.1 (hypothetical protein SDJN03_23151, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 50.8 bits (120), Expect = 4.68e-05
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 3  LGKEGGQNRDGIPNNDTYDCLDQDLEDFENLFTSSL 38
          L KEGGQNR GIP NDT D LD+DLED ++L TSS+
Sbjct: 46 LDKEGGQNRGGIPKNDTKDGLDEDLEDSQHLVTSSV 81

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g09510 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g09510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578701.12.58e-0565.91hypothetical protein SDJN03_23149, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6578703.14.68e-0569.44hypothetical protein SDJN03_23151, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG13g09510 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g09510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g09510.1Cp4.1LG13g09510.1mRNA