Cp4.1LG13g09500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g09500
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG13: 7492040 .. 7492357 (+)
RNA-Seq ExpressionCp4.1LG13g09500
SyntenyCp4.1LG13g09500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATCCCCGCACTCCGACATGTACGACCAACCATTGTCGTCACTGCCATCTTCAAGGCTCTTCCTCTTGCACCAAATGCACTTCCCTTTCACCTTCTTGTGGAGATTAAATTCCACGTCTTCGAATCGGTAGCTCTTTTTCAGGTCATAGCAGCATGGGTGGATATCCAAGTCATCTTCCTCACAATGAAACACGAACCCTTCAATGCTCTTCCTGCAAGCGTCACACCTTACTCTGCATTCTGGGTGGCACGGTTCTGGGGGATTTCTCATGAACCTGAACCTCGAGCCCGGGAAAAATTCATGCGAAACTGA

mRNA sequence

ATGGTAATCCCCGCACTCCGACATGTACGACCAACCATTGTCGTCACTGCCATCTTCAAGGCTCTTCCTCTTGCACCAAATGCACTTCCCTTTCACCTTCTTGTGGAGATTAAATTCCACGTCTTCGAATCGGTAGCTCTTTTTCAGGTCATAGCAGCATGGGTGGATATCCAAGTCATCTTCCTCACAATGAAACACGAACCCTTCAATGCTCTTCCTGCAAGCGTCACACCTTACTCTGCATTCTGGGTGGCACGGTTCTGGGGGATTTCTCATGAACCTGAACCTCGAGCCCGGGAAAAATTCATGCGAAACTGA

Coding sequence (CDS)

ATGGTAATCCCCGCACTCCGACATGTACGACCAACCATTGTCGTCACTGCCATCTTCAAGGCTCTTCCTCTTGCACCAAATGCACTTCCCTTTCACCTTCTTGTGGAGATTAAATTCCACGTCTTCGAATCGGTAGCTCTTTTTCAGGTCATAGCAGCATGGGTGGATATCCAAGTCATCTTCCTCACAATGAAACACGAACCCTTCAATGCTCTTCCTGCAAGCGTCACACCTTACTCTGCATTCTGGGTGGCACGGTTCTGGGGGATTTCTCATGAACCTGAACCTCGAGCCCGGGAAAAATTCATGCGAAACTGA

Protein sequence

MVIPALRHVRPTIVVTAIFKALPLAPNALPFHLLVEIKFHVFESVALFQVIAAWVDIQVIFLTMKHEPFNALPASVTPYSAFWVARFWGISHEPEPRAREKFMRN
Homology
BLAST of Cp4.1LG13g09500 vs. NCBI nr
Match: XP_023550075.1 (uncharacterized protein LOC111808373 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101 bits (252), Expect = 3.85e-24
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 1   MVIPALRHVRPTIVVTAIFKALPLAPNALPFHLLVEIKFHVFESVALFQVIAAWVDIQVI 60
           MV+ A+R V P I   A+F A  LAP+ALPFHLLVEI+ HVF  V +F+V AAWV++QVI
Sbjct: 3   MVVAAVRDVGPPIASAAVFGAPTLAPHALPFHLLVEIELHVFNLVTIFEVSAAWVEVQVI 62

Query: 61  FLTMKHEPFNALPASVTPYSAFWVARFWGISHEPEPRAREKFM 103
           FL ++HE  +   ASV PY    VA FW +S E +  AR++FM
Sbjct: 63  FLAVEHEAIDGFSASVAPYYGL-VAAFWWVSEELKGGARKEFM 104

BLAST of Cp4.1LG13g09500 vs. NCBI nr
Match: XP_023550074.1 (uncharacterized protein LOC111808373 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101 bits (252), Expect = 5.88e-24
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 1   MVIPALRHVRPTIVVTAIFKALPLAPNALPFHLLVEIKFHVFESVALFQVIAAWVDIQVI 60
           MV+ A+R V P I   A+F A  LAP+ALPFHLLVEI+ HVF  V +F+V AAWV++QVI
Sbjct: 3   MVVAAVRDVGPPIASAAVFGAPTLAPHALPFHLLVEIELHVFNLVTIFEVSAAWVEVQVI 62

Query: 61  FLTMKHEPFNALPASVTPYSAFWVARFWGISHEPEPRAREKFM 103
           FL ++HE  +   ASV PY    VA FW +S E +  AR++FM
Sbjct: 63  FLAVEHEAIDGFSASVAPYYGL-VAAFWWVSEELKGGARKEFM 104

BLAST of Cp4.1LG13g09500 vs. NCBI nr
Match: KAG6578700.1 (hypothetical protein SDJN03_23148, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 1.24e-19
Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = 0

Query: 1   MVIPALRHVRPTIVVT----AIFKALPLAPNALPFHLLVEIKFHVFESVALFQVIAAWVD 60
           MV+ A+R VRP IV      A+F+A  LAP ALPFHL VEI+ HVF  V  F+V AAWV 
Sbjct: 3   MVVAAVRDVRPPIVSVSVSAAVFEAPILAPYALPFHLHVEIELHVFNLVTFFEVSAAWVK 62

Query: 61  IQVIFLTMKHEPFNALPASVTPYSAFWVARFWGISHEPEPRAREKFM 103
           +Q  FL ++HE  +   ASV P+ A  VA FW +S E +   R++FM
Sbjct: 63  VQFRFLAVEHEAIDGFSASVAPHYAL-VAAFWWVSEELKGGTRKEFM 108

BLAST of Cp4.1LG13g09500 vs. ExPASy TrEMBL
Match: A0A0A0KNV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517075 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.11e-14
Identity = 48/105 (45.71%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 1   MVIPALRHVRPTIVVTAIFKALPLAPNALPFHLLVEIKFHVFESVALFQVIAAWVDIQVI 60
           MV+PALR+V PTI +   F    LAP+ALP   LVEI+ HVF  V   +V  A V+IQVI
Sbjct: 3   MVLPALRYVGPTIALAMAFDGPLLAPHALPLDFLVEIEHHVFNLVIPVEVSTAGVEIQVI 62

Query: 61  FLTMKHEPFNALPASVTPYSAFWVARFWGISHEPEPRAREKFMRN 105
           FL + H+  +   A V    AF VA  W    E E    EKFM++
Sbjct: 63  FLAVVHKAIDRFCAGVANPFAFVVAGPWWGFRELEGGTCEKFMKH 107

BLAST of Cp4.1LG13g09500 vs. ExPASy TrEMBL
Match: A0A0A0KU92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G516570 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.97e-08
Identity = 45/107 (42.06%), Postives = 57/107 (53.27%), Query Frame = 0

Query: 1   MVIPALRHVRPTIVVTAIFKALPLAPNALPFHLLVEIKFHVFESVALFQVIAAWVDIQVI 60
           MV+PALR+V PTI +        LAP+ALP   LVEI+ HVF  V   QV  A V+IQ+ 
Sbjct: 3   MVLPALRYVGPTIGLAMGIDGPLLAPHALPLDFLVEIELHVFNFVIPVQVSTARVEIQLD 62

Query: 61  F--LTMKHEPFNALPASVTPYSAFWVARFWGISHEPEPRAREKFMRN 105
           F  L + H+  + L A V    A   A  W    E E    E+FM+N
Sbjct: 63  FDFLAVVHKAIDRLCAGVAKLFAVVAAGPWWGFKELEGGLWEEFMKN 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023550075.13.85e-2453.40uncharacterized protein LOC111808373 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023550074.15.88e-2453.40uncharacterized protein LOC111808373 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6578700.11.24e-1949.53hypothetical protein SDJN03_23148, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KNV75.11e-1445.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517075 PE=4 SV=1[more]
A0A0A0KU921.97e-0842.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G516570 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g09500.1Cp4.1LG13g09500.1mRNA