Cp4.1LG13g09070 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g09070
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	tRNA pseudouridine synthase B
Location	Cp4.1LG13: 7590309 .. 7596658 (-)
RNA-Seq Expression	Cp4.1LG13g09070
Synteny	Cp4.1LG13g09070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTTGGGCTTTCCTTTTTGTAGGAGTAGATATTGTTATCTTTGAGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTTCTTTCTGTAGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCCGTAGGAGTAGATATTGTTCCTGTAGGAGGATATTGTTTGGGCTTTCCTGTAGGAGTAGATATTGTTATCTTTGGCCTTTCCTGTAAGAGTAGATATTGTTATCTTTGGGTTTTCCTTACGGTAGGAGTAGATATTGTTATCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTGTAGGAATAGATATTGTTATCCTTGGGCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTTCTGTAGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTTTGTAGGAGTAGATATTGTTATCTTTGAGCTTTCCTTTATGTAGGAGTAGATATTGTTATCCTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGAGCTTTCCTTTTTGTATTTGGGCTTTCCTCTCTGTAGGAGTTATCTTTGAGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCCGTAGGAGTAGATATTGTTCCTGTAGGAGGATATTGTTTGGGCTTTCCTGTAGGAGTAGATATTGTTATCTTTGGCCTTTCCTGTAAGAGTAGATATTGTTATCTTTGGGTTTTCCTTACTGTAGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTTTGTAGGAGTAGTCCTTTTTGTAGGAGTAGATATTGTTATAGGAGTAGATATTGTTATCTTTGGGCTTTCCTCTCTGTAGGAGTTATCTTTGAGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTTCCTTTCTGTCGGAGTATATATTGTTATCTTTGGGCTTTCCTTTCCGTAGGAGTAGATATTGTTATCTTTGAGCTTTCCTTTCTGTCGGAGAGTAGAATCTTTGGGCTTTTCTTTCTGTAGAAGTAGATTTTATTATCTTTGGGTTTTCCTTAAAGTTTCTTTCGAGGTTTTTAAAAGACATTTATTAGGGAGGAGGTTCTATCACTTTTTCATGACTTAAAAATAAAGTTTTAACTTTTAATGTGCTCGATTCTCATTGTTCCTTTTTTCTTTTATAAAATTAAAGTAAAAAATACCCCAAACTTTTAAAATGGTTAAATATGGACATAAAAATAGTAAAATTATAATAATAATTATCAAAATGTGTGGGAATTTAAATCGACAAATAATCATATATATGAGGAAAAAAATTGAAAAAGAAGAATAATGTAGTAAAATAAAAGAAACATCTCCTCCCCGCCCACCCCACCAAGAAGGTTCAGAGTCTCACGAACTCCCTCAGCCATCTAACAATCACTTCAATGGCGACATCACCTGCTCTATCTCATGCCTCCCATTTCTTCATTCGGTCTACACTCATGGCTTCTTCCAAATCGCTCGCTTTCTTCTTCCCACTTTCAAACCTCAACCATCTCCACAGATTTCCCAACTCACTTTCTCTCTTATCGCTCCGCAGATCCTCGACTACTTCCACCCCATTCCCTCTCCAATACGATATGATCGTCAACCGCCCCATCTATCCTCCCATGCCCCCTCAGAACCGACGAACACCCCCCAGAATCAGCCCCGACAACTCTCCCGAGCTCGAGTCCTCCGAGGATCCCGTTTCCGAATTGGGGTTCGAGAGCTGGGTGGATCAGAAGCTTATTTCCGAGAGTGAATCTGCGTCCGGTAAAGAAGGCGTGGTCATGGACAAGGCTAAGAGGAAATACTATAATAAAAGAAGGAAGAGAATGTATGGGTCCGATTCTGATGAAGATAAGAAGACCCAGGACGAGGGGTTTGTGGAATTAAAGCCTGAGGTGGTTGAGTTCAACACATTGCATAAGAGAGAGGAGGAATTGTTCTTCTATGACACTTTTGCGTATCCATGGGAGAAAGATAAGCATTACAAAATGGTGTATCAGTTAGAGAGAAAGTATTTTCCTGATGAAGGTCTTGACAAGGCTTTTCTGGGACCTGGAGAGTCAAATGTGGAAGTGAATGAACAGACAAAGGGAAGGAAGGGGGTGAGAAAGGCAGTGGGGGTTAAGCCCGAGACGAAATTGGAGGTCACAAATGGCGTGGATGGAAAAGGGTTGGTTTTCTTTGATGGGGGGAGACCAGAAAAGGATAATAAAGGGTCGGCGAAAGATGTGACAGAGAAGAAGGTGGAGGAGTTCTTCAAGTGTTTGAAGAAAGTTCCAGCCAAAGATTCTGAAATTGGTCAGACGGAGCCATATCTTTTGACGAGACATACAGAGCTCCCTGCCAAATGGGATAGTCCTTGTGGGACAGTGGTTTTGGTGAACAAACCTAAAGGTCAGTCTGTGGTTTATGCAGCCCTTAGAAGGGAATACCCTGTTTATAATCATTGATTTGATATCTTGGTGAAAGTTCTAAATCCATTCACATGTCCTCTAATTTGCATTGTTCCAGTTAGAAGTCAATTCCTCAGCCCTTTTTTTCTTGATGTTTAAAAAGAACAATATGATTATTTAACGTAGGGTGGACTTCATTTACGGTGTGTGGAAAACTTCGGCGCCTAGTCAAAGTGAAAAAGGTGCATTTCAGCTGTTTTAGACTAAGTTATTCGATTATCTGAGCTCCTCTGACTGCATTGTTTTCCACTTATGTGCATTGATAGGTAGGTCATGCAGGTACTCTTGATCCTATGGCTACTGGATTGTTGATAGTTTGTGTTGGTAAAGCGACTAAGTTGGCAGACAGGTGATTGATTAAGTTAGCTTTGTAATTGCTGTTTTGTTTTCTTCTCCCCACTTCCTTTCTTTAATAACAAACTAACAATAATAAACAAAGGGTAAGGGAGGATATCTTCCCAAGCCTAACACAGATGAAATGAGAAATCCTGAGGCATACAACTTTTCTAAAAGGTGGCATGTTTATGTTTTAGATATCAAGGTATGATCAAGAGCTACAGTGGAGTTTTCCGTTTAGGAGAGGCTACTTCAACTTGGGATGCTGATTCAGCGGTATGTTGATGTTATCATTCAAGTCAATTATGATTTCATGTTTTTAATTGATATGCATCTGTGTTCTATACCTGCTGTGTTCTTTGGGAAATGTATTGGATCTGTCAGAGGAATCTTTATTGTTCAAGTCTTAAAGGAAGAAGATCTATGATTCTATATTAACTCATCAAACATTTGCCTCTGGCAAGTCCGTCTCACTATAGGCATGAAGAGGCTTCAGTTTATATGCATTCTATCCTTTTTCTATCATTAGCATAATGTTCTTCAACATTCTATTAGTTGTTGAGTTCTTAGGTTAATTGCAAGGTGAGGTTTTGGCTGTCTCACAGGTCAATAAAAGATTTCAATTGGGTTCAGTTCCTAATGGGTATATATTTGTATATCTTCCAAATAAGAAACGCTTGTCCCAATTATTATGCAGGTAATTCAGCGAGAGCCTTGGGAGCACATCAAAGATGATGACATCAAAAAAGCTGTTGCCTCTTTTTGTGGGGAAATTTGGCAAGTTCCTCCCATGTTTTCTGCCATTAAAGTAAGCACTTCTTCTTTCTATAGTTATAACTTCACAAGGTATAAGTACTGTTGTTAAAAATGCATGCTTCATAGTAGAAACACATGATTCATAACATATCTGTATGGAATACTTACAAAACAGATGAAGCGTTTATTTCAATGTACTTTGTGGTATAAGATTATAGTGCGTACGTATATTAAATCGATGGATGGAACACTAGTATGGCCATCTTTTTTTTTTCTTTTTTTTATGTAGTGTCAACCTCATTTATCTGATTCTTTAAACTATGAGTTACTTGTCAATATGAAATCAATGTTCAAGGAGATCTTGGCTGGATGAGTCAGATTTGGTTACAAATTTCGATATCGTGTTTTTAGGTCGGAGGTGAGAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGTATTGAGCTTTCCCCTAGGCGGATATCAATTTACAAATTTGATATTGAACGTAGTTTAGATGACAGGTATGTTCACTCCCAAAGTACTTCTGTTAAATCATTTCTGTAATTTGTGGGTAGGCCATATGCAAAGAAAGAAATTTGTGTAGCTAAAATTGTGGCATGGGCTTGGAAGCTTAAGTTTTGATCCGATTTTCTTGTAGAAAGATGAAAGTAATAAGAGAGGAATCATATAGAAATCTCGAAAGAGTTACAGGAAAAGGTTCAAATTTGTAGTGATTAAACATGAAGGAAAATCACAAAAAGGTCCAAATTTTCAAAAAAAAATCTTATGGCAGACTCATTATGACAAATACGGATGATTCTGAGGAATCAGACGAAATGGTTTTGCTACGGTATTCCCAACTATCGGATTTTCGTGAAGACGTAATATTGACAACTTTTAACAACTGTACTTGGTTGTTTACTTGGAGCTTTGGCTGGTGTTGTTTGTTGCACCAATATGAATCCACTTCTAAAATTAGTGAGTATGTATATTCTTTGACAGGCAAAATTTGATTTTTCGAGTAACATGTTCTAAAGGAACATACATTCGGTCACTTTGTGCGGATCTTGGGAAGGCTCTTGGCAGGTATTATTATTCATCTTGCCCTTTGCTATGGAACCTTCATTTCTGTACACTTCTTTTACTCTTTATTACCCAGAAATGCTTCGAGGAGTTAAGTTGTGTCCAGCTTCTTCTGGTTCGTTTTGTTCGTCTCTAGTAATATTCTTGTGTCTTGCAGTTGTGCCCATCTGACTGCTCTTCGAAGGGATTCAATAGGTCAGTTTTTTTTCTTTCATTGAATTATAATGGCACGAGCAGAAGCTGAACGGCTGAATATCCAAGAAGACAATGTGATAGATATTGACATATGAGGTTCCCTTCCATTTCAGGGGAATATCTAGCAGATGATGCCTGGGAATTCAAAGAGTTGGAAGATGCGATTACCAAAGCTTATTTTTAGCTTTAAGGATCTCATTATCATCTTCTGATTAAAGAAAGACAACCACGAGATAAATGGAACGGAGAGAACGGTTTGAGCAGTCTGTTGGTTTGTCGTAGTTAGGGGAAAGAGTTATTGTACATCGAGAAAATAATGAGGTAATTTCATACTATTGTTTTCTTGAATATTTACTAAAAATAGATATCAAACGGCGTCAAGCTGGCTACATGACGATCGAGAAGACTTCTTCAGCAACTTTTGCAGTAAACTAATGATGTTTGAAGAACATTACCGAGGTTTTGCCAGATTTGATGCAAAATAGTTCAGTTGAGTTAAATGGGAGTCGAGATCAATTTTTAGTGTGCAAACTAGAGATTAAAGCTCCTTTTTAAGACTATTTTCTACATGTAGTAGATTCTATCCATTATACAGCCATGATCTAATCCATACGTAGCCTTACTTACTTATCTCTCACAGGAAGTTTTTTTAGAGCTTAAAAAGACTAAGCATTAGGTACTAATACTCCTAAGAGACGGAACAATTACCAGTGCGACACACAAGATCTCTTCAGTAGAAAGTGGAAGAATAGTTGCAGCTGTTTTCCTACACTTGAGTTGAATTTGGTGGATCAATCCCCATTCCCTGATAGTAGGCCTTCTCTGCATCAGCCAACCGGCTCTTAAAAATTGTCCATTCTTTTCTACATCTCTCTCTCACCTGAGAATATTCAAATTAAGTAATTAACATTAGTTTTAAATTCTGTAAGGTGGTGGGGTTTGGAATTCATCAGCTGCTTACCCCTTCCCATGGTGGCCTCCCATTTTCGGCTTTTCCCTGTTGGAAGAATATATCGTGAGAAGAAAATCTTTGTTATGAAATGGTAGAGGCAGTATCCAAAGTGTCGGATTACCTGGTTCCCAAGAGAAGGAACGCTTTGGTGCACAATCCACTGAGCGTCTACAACCCCTATTTTCTCATGAGCGGGCTG

mRNA sequence

ATCTTTGGGCTTTCCTTTTTGTAGGAGTAGATATTGTTATCTTTGAGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTTCTTTCTGTAGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCCGTAGGAGTAGATATTGTTCCTGTAGGAGGATATTGTTTGGGCTTTCCTGTAGGAGTAGATATTGTTATCTTTGGCCTTTCCTGTAAGAGTAGATATTGTTATCTTTGGGTTTTCCTTACGGTAGGAGTAGATATTGTTATCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTGTAGGAATAGATATTGTTATCCTTGGGCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTTCTGTAGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTTTGTAGGAGTAGATATTGTTATCTTTGAGCTTTCCTTTATGTAGGAGTAGATATTGTTATCCTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGAGCTTTCCTTTTTGTATTTGGGCTTTCCTCTCTGTAGGAGTTATCTTTGAGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCCGTAGGAGTAGATATTGTTCCTGTAGGAGGATATTGTTTGGGCTTTCCTGTAGGAGTAGATATTGTTATCTTTGGCCTTTCCTGTAAGAGTAGATATTGTTATCTTTGGGTTTTCCTTACTGTAGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTCTGTCGGAGTAGATATTGTTATCTTTGGGCTTTCCTTTTTGTAGGAGTAGTCCTTTTTGTAGGAGTAGATATTGTTATAGGAGTAGATATTGTTATCTTTGGGCTTTCCTCTCTGTAGGAGTTATCTTTGAGCTTTCCTTTCTGTAGGAGTAGATATTGTTATCCTTGGGCTTTCCTTTCTGTCGGAGTATATATTGTTATCTTTGGGCTTTCCTTTCCGTAGGAGTAGATATTGTTATCTTTGAGCTTTCCTTTCTGTCGGAGAGTAGAATCTTTGGGCTTTTCTTTCTGTAGAAGTAGATTTTATTATCTTTGGGTTTTCCTTAAAGTTTCTTTCGAGGTTTTTAAAAGACATTTATTAGGGAGGAGGTTCTATCACTTTTTCATGACTTAAAAATAAAGTTTTAACTTTTAATGTGCTCGATTCTCATTGTTCCTTTTTTCTTTTATAAAATTAAAGTAAAAAATACCCCAAACTTTTAAAATGGTTAAATATGGACATAAAAATAGTAAAATTATAATAATAATTATCAAAATGTGTGGGAATTTAAATCGACAAATAATCATATATATGAGGAAAAAAATTGAAAAAGAAGAATAATGTAGTAAAATAAAAGAAACATCTCCTCCCCGCCCACCCCACCAAGAAGGTTCAGAGTCTCACGAACTCCCTCAGCCATCTAACAATCACTTCAATGGCGACATCACCTGCTCTATCTCATGCCTCCCATTTCTTCATTCGGTCTACACTCATGGCTTCTTCCAAATCGCTCGCTTTCTTCTTCCCACTTTCAAACCTCAACCATCTCCACAGATTTCCCAACTCACTTTCTCTCTTATCGCTCCGCAGATCCTCGACTACTTCCACCCCATTCCCTCTCCAATACGATATGATCGTCAACCGCCCCATCTATCCTCCCATGCCCCCTCAGAACCGACGAACACCCCCCAGAATCAGCCCCGACAACTCTCCCGAGCTCGAGTCCTCCGAGGATCCCGTTTCCGAATTGGGGTTCGAGAGCTGGGTGGATCAGAAGCTTATTTCCGAGAGTGAATCTGCGTCCGGTAAAGAAGGCGTGGTCATGGACAAGGCTAAGAGGAAATACTATAATAAAAGAAGGAAGAGAATGTATGGGTCCGATTCTGATGAAGATAAGAAGACCCAGGACGAGGGGTTTGTGGAATTAAAGCCTGAGGTGGTTGAGTTCAACACATTGCATAAGAGAGAGGAGGAATTGTTCTTCTATGACACTTTTGCGTATCCATGGGAGAAAGATAAGCATTACAAAATGGTGTATCAGTTAGAGAGAAAGTATTTTCCTGATGAAGGTCTTGACAAGGCTTTTCTGGGACCTGGAGAGTCAAATGTGGAAGTGAATGAACAGACAAAGGGAAGGAAGGGGGTGAGAAAGGCAGTGGGGGTTAAGCCCGAGACGAAATTGGAGGTCACAAATGGCGTGGATGGAAAAGGGTTGGTTTTCTTTGATGGGGGGAGACCAGAAAAGGATAATAAAGGGTCGGCGAAAGATGTGACAGAGAAGAAGGTGGAGGAGTTCTTCAAGTGTTTGAAGAAAGTTCCAGCCAAAGATTCTGAAATTGGTCAGACGGAGCCATATCTTTTGACGAGACATACAGAGCTCCCTGCCAAATGGGATAGTCCTTGTGGGACAGTGGTTTTGGTGAACAAACCTAAAGGGTGGACTTCATTTACGGTGTGTGGAAAACTTCGGCGCCTAGTCAAAGTGAAAAAGGTAGGTCATGCAGGTACTCTTGATCCTATGGCTACTGGATTGTTGATAGTTTGTGTTGGTAAAGCGACTAAGTTGGCAGACAGATATCAAGGTATGATCAAGAGCTACAGTGGAGTTTTCCGTTTAGGAGAGGCTACTTCAACTTGGGATGCTGATTCAGCGGTAATTCAGCGAGAGCCTTGGGAGCACATCAAAGATGATGACATCAAAAAAGCTGTTGCCTCTTTTTGTGGGGAAATTTGGCAAGTTCCTCCCATGTTTTCTGCCATTAAAGTCGGAGGTGAGAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGTATTGAGCTTTCCCCTAGGCGGATATCAATTTACAAATTTGATATTGAACGTAGTTTAGATGACAGGCAAAATTTGATTTTTCGAGTAACATGTTCTAAAGGAACATACATTCGGTCACTTTGTGCGGATCTTGGGAAGGCTCTTGGCAGTTGTGCCCATCTGACTGCTCTTCGAAGGGATTCAATAGGGGAATATCTAGCAGATGATGCCTGGGAATTCAAAGAGTTGGAAGATGCGATTACCAAAGCTTATTTTTAGCTTTAAGGATCTCATTATCATCTTCTGATTAAAGAAAGACAACCACGAGATAAATGGAACGGAGAGAACGGTTTGAGCAGTCTGTTGGTTTGTCGTAGTTAGGGGAAAGAGTTATTGTACATCGAGAAAATAATGAGGTAATTTCATACTATTGTTTTCTTGAATATTTACTAAAAATAGATATCAAACGGCGTCAAGCTGGCTACATGACGATCGAGAAGACTTCTTCAGCAACTTTTGCAGTAAACTAATGATGTTTGAAGAACATTACCGAGGTTTTGCCAGATTTGATGCAAAATAGTTCAGTTGAGTTAAATGGGAGTCGAGATCAATTTTTAGTGTGCAAACTAGAGATTAAAGCTCCTTTTTAAGACTATTTTCTACATGTAGTAGATTCTATCCATTATACAGCCATGATCTAATCCATACGTAGCCTTACTTACTTATCTCTCACAGGAAGTTTTTTTAGAGCTTAAAAAGACTAAGCATTAGGTACTAATACTCCTAAGAGACGGAACAATTACCAGTGCGACACACAAGATCTCTTCAGTAGAAAGTGGAAGAATAGTTGCAGCTGTTTTCCTACACTTGAGTTGAATTTGGTGGATCAATCCCCATTCCCTGATAGTAGGCCTTCTCTGCATCAGCCAACCGGCTCTTAAAAATTGTCCATTCTTTTCTACATCTCTCTCTCACCTGAGAATATTCAAATTAAGTAATTAACATTAGTTTTAAATTCTGTAAGGTGGTGGGGTTTGGAATTCATCAGCTGCTTACCCCTTCCCATGGTGGCCTCCCATTTTCGGCTTTTCCCTGTTGGAAGAATATATCGTGAGAAGAAAATCTTTGTTATGAAATGGTAGAGGCAGTATCCAAAGTGTCGGATTACCTGGTTCCCAAGAGAAGGAACGCTTTGGTGCACAATCCACTGAGCGTCTACAACCCCTATTTTCTCATGAGCGGGCTG

Coding sequence (CDS)

ATGGCGACATCACCTGCTCTATCTCATGCCTCCCATTTCTTCATTCGGTCTACACTCATGGCTTCTTCCAAATCGCTCGCTTTCTTCTTCCCACTTTCAAACCTCAACCATCTCCACAGATTTCCCAACTCACTTTCTCTCTTATCGCTCCGCAGATCCTCGACTACTTCCACCCCATTCCCTCTCCAATACGATATGATCGTCAACCGCCCCATCTATCCTCCCATGCCCCCTCAGAACCGACGAACACCCCCCAGAATCAGCCCCGACAACTCTCCCGAGCTCGAGTCCTCCGAGGATCCCGTTTCCGAATTGGGGTTCGAGAGCTGGGTGGATCAGAAGCTTATTTCCGAGAGTGAATCTGCGTCCGGTAAAGAAGGCGTGGTCATGGACAAGGCTAAGAGGAAATACTATAATAAAAGAAGGAAGAGAATGTATGGGTCCGATTCTGATGAAGATAAGAAGACCCAGGACGAGGGGTTTGTGGAATTAAAGCCTGAGGTGGTTGAGTTCAACACATTGCATAAGAGAGAGGAGGAATTGTTCTTCTATGACACTTTTGCGTATCCATGGGAGAAAGATAAGCATTACAAAATGGTGTATCAGTTAGAGAGAAAGTATTTTCCTGATGAAGGTCTTGACAAGGCTTTTCTGGGACCTGGAGAGTCAAATGTGGAAGTGAATGAACAGACAAAGGGAAGGAAGGGGGTGAGAAAGGCAGTGGGGGTTAAGCCCGAGACGAAATTGGAGGTCACAAATGGCGTGGATGGAAAAGGGTTGGTTTTCTTTGATGGGGGGAGACCAGAAAAGGATAATAAAGGGTCGGCGAAAGATGTGACAGAGAAGAAGGTGGAGGAGTTCTTCAAGTGTTTGAAGAAAGTTCCAGCCAAAGATTCTGAAATTGGTCAGACGGAGCCATATCTTTTGACGAGACATACAGAGCTCCCTGCCAAATGGGATAGTCCTTGTGGGACAGTGGTTTTGGTGAACAAACCTAAAGGGTGGACTTCATTTACGGTGTGTGGAAAACTTCGGCGCCTAGTCAAAGTGAAAAAGGTAGGTCATGCAGGTACTCTTGATCCTATGGCTACTGGATTGTTGATAGTTTGTGTTGGTAAAGCGACTAAGTTGGCAGACAGATATCAAGGTATGATCAAGAGCTACAGTGGAGTTTTCCGTTTAGGAGAGGCTACTTCAACTTGGGATGCTGATTCAGCGGTAATTCAGCGAGAGCCTTGGGAGCACATCAAAGATGATGACATCAAAAAAGCTGTTGCCTCTTTTTGTGGGGAAATTTGGCAAGTTCCTCCCATGTTTTCTGCCATTAAAGTCGGAGGTGAGAAGATGTATGAGAAAGCAAGAAGAGGAGAAAGTATTGAGCTTTCCCCTAGGCGGATATCAATTTACAAATTTGATATTGAACGTAGTTTAGATGACAGGCAAAATTTGATTTTTCGAGTAACATGTTCTAAAGGAACATACATTCGGTCACTTTGTGCGGATCTTGGGAAGGCTCTTGGCAGTTGTGCCCATCTGACTGCTCTTCGAAGGGATTCAATAGGGGAATATCTAGCAGATGATGCCTGGGAATTCAAAGAGTTGGAAGATGCGATTACCAAAGCTTATTTTTAG

Protein sequence

MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPFPLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESESASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEELFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKAVGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKDSEIGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITKAYF

Homology

[Close]

BLAST of Cp4.1LG13g09070 vs. ExPASy Swiss-Prot
Match: Q9RB36 (tRNA pseudouridine synthase B OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=truB PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 6.2e-49
Identity = 103/222 (46.40%), Postives = 140/222 (63.06%), Query Frame = 0


Query: 324 GTVVLVNKPKGWTSFTVCGKLRRLV-------KVKKVGHAGTLDPMATGLLIVCVGKATK 383
           G V+L++KP  W+SF    KL+ L+       K  K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 9   GQVLLIDKPLKWSSFQAVNKLKYLLINKVGLPKKFKIGHAGTLDPLATGLLLICTGKFTK 68

Query: 384 LADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDDIKKAVASFCGEIWQVP 443
                QG  K Y+G F +G  T ++D ++ + Q  P EHI +  I + V  F GEI Q P
Sbjct: 69  KISELQGQAKEYTGTFYIGATTPSYDLETEIDQTFPTEHINEVLIHETVKQFLGEIDQKP 128

Query: 444 PMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIR 503
           P+FSAIK  G ++YE AR GESIE+  R+ +I++F+I R       + FRV CSKGTYIR
Sbjct: 129 PIFSAIKKDGVRLYEHARAGESIEIESRKTTIHEFEITRIA--LPEIDFRVVCSKGTYIR 188

Query: 504 SLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAI 539
           SL  D GKA+ S +HLT LRR  IG+Y   +A +    E+++
Sbjct: 189 SLAYDFGKAMNSGSHLTVLRRTKIGDYDVKNAIDITLFEESL 228

[Close]

BLAST of Cp4.1LG13g09070 vs. ExPASy Swiss-Prot
Match: A0JUU8 (tRNA pseudouridine synthase B OS=Arthrobacter sp. (strain FB24) OX=290399 GN=truB PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-48
Identity = 98/217 (45.16%), Postives = 139/217 (64.06%), Query Frame = 0


Query: 326 VVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLADRYQGMI 385
           +V+V+KP+GWTS  V G++RRL   +KVGHAGTLDPMATG+L++ + KAT+L     G  
Sbjct: 5   LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 64

Query: 386 KSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVG 445
           K+Y+   RLGE+T T DA+  V+       + +  I+ AVA+  GEI QVP   SAIKV 
Sbjct: 65  KTYTATIRLGESTVTDDAEGEVVSSHSAAAVTEGAIRAAVAALTGEIQQVPSSVSAIKVN 124

Query: 446 GEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIF----RVTCSKGTYIRSLCAD 505
           GE+ Y + R GE ++L+ R ++I++FD+     +R   +      V CS GTYIR+L  D
Sbjct: 125 GERAYARVRSGEDVKLAARPVTIHRFDVHAVRPERAGAVLDVDVTVECSSGTYIRALARD 184

Query: 506 LGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAI 539
           LG+ALG+  HLTALRR  +G Y  D A   ++L + +
Sbjct: 185 LGEALGTGGHLTALRRTQVGPYTLDQARTLEQLAEEL 221

[Close]

BLAST of Cp4.1LG13g09070 vs. ExPASy Swiss-Prot
Match: A1R520 (tRNA pseudouridine synthase B OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=truB PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 9.0e-48
Identity = 101/217 (46.54%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 326 VVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLADRYQGMI 385
           +V+V+KP+GWTS  V G++RRL   +KVGHAGTLDPMATG+L++ + KAT+L     G  
Sbjct: 5   LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 64

Query: 386 KSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVG 445
           K+Y+   RLGE T T DA+  V +     HI DD +   VA+  G I QVP   SAIKV 
Sbjct: 65  KTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAIKVN 124

Query: 446 GEKMYEKARRGESIELSPRRISIYKFDIE--RSLDDRQNLIFRVT--CSKGTYIRSLCAD 505
           GE+ Y + R GE ++L+ R ++I++FD+     +D  + +   VT  CS GTYIR+L  D
Sbjct: 125 GERSYARVRSGEEVKLAARPVTIHRFDVHSITRIDGGRVVDVDVTVECSSGTYIRALARD 184

Query: 506 LGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAI 539
           LG ALG   HLTALRR  +G Y  D A   +EL + +
Sbjct: 185 LGNALGIGGHLTALRRTQVGPYSLDQARTLEELAEEL 221

[Close]

BLAST of Cp4.1LG13g09070 vs. ExPASy Swiss-Prot
Match: Q47RU8 (tRNA pseudouridine synthase B OS=Thermobifida fusca (strain YX) OX=269800 GN=truB PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 7.6e-47
Identity = 99/220 (45.00%), Postives = 134/220 (60.91%), Query Frame = 0


Query: 326 VVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLADRYQGMI 385
           VV+V+KP GWTS  V  ++RRL   ++VGHAGTLDPMATG+L+V VGKAT+L        
Sbjct: 5   VVIVDKPAGWTSHDVVARVRRLAGTRRVGHAGTLDPMATGVLVVGVGKATRLLGYLALTE 64

Query: 386 KSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVG 445
           K Y    RLG++T+T DA+  +++R P +HI +  +     +  G I QVPP  SA+KV 
Sbjct: 65  KVYEATIRLGQSTTTDDAEGELLERRPADHIDEAAVHAGTRALTGVIHQVPPQVSAVKVR 124

Query: 446 GEKMYEKARRGESIELSPRRISIYKFDIE--RSLDDRQNLIF----RVTCSKGTYIRSLC 505
           G++ Y +AR GE++EL  R +++++F +   R +D           RVTCS GTYIRSL 
Sbjct: 125 GQRAYRRARAGETVELKAREVTVHEFTVTGFRRVDSPDGAFVDVDARVTCSSGTYIRSLA 184

Query: 506 ADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAIT 540
            DLG  LG   HLTALRR  +G Y  + A    EL    T
Sbjct: 185 RDLGADLGVGGHLTALRRTRVGPYTVEQAATLDELAAEFT 224

[Close]

BLAST of Cp4.1LG13g09070 vs. ExPASy Swiss-Prot
Match: A3PY88 (tRNA pseudouridine synthase B OS=Mycobacterium sp. (strain JLS) OX=164757 GN=truB PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.9e-46
Identity = 99/215 (46.05%), Postives = 136/215 (63.26%), Query Frame = 0


Query: 324 GTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLADRYQG 383
           G +V+V+KP G TS  V G+ RR+   +KVGHAGTLDPMATG+L+V + +ATKL      
Sbjct: 8   GGIVIVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKLLGLLTA 67

Query: 384 MIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIK 443
             KSY    RLG+ T+T DA+  V++  P   I D+ I  AVA+  GEI QVP   SAIK
Sbjct: 68  TDKSYEATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPSAVSAIK 127

Query: 444 VGGEKMYEKARRGESIELSPRRISIYKFDI--ERSLDDRQNLIFRVTCSKGTYIRSLCAD 503
           VGG++ Y+ AR G+++EL+ RR+ I +F++   R +D   ++   V CS GTYIR+L  D
Sbjct: 128 VGGQRAYKLAREGQTVELAARRVRIDRFEVLAIRRVDGFVDVDVAVDCSSGTYIRALARD 187

Query: 504 LGKALGSCAHLTALRRDSIGEYLADDAWEFKELED 537
           +G  LG   HLT LRR  +G +  D+A+    L D
Sbjct: 188 VGVTLGVGGHLTLLRRTRVGRFGLDEAYPLDALAD 222

[Close]

BLAST of Cp4.1LG13g09070 vs. NCBI nr
Match: XP_023550635.1 (uncharacterized protein LOC111808717 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1080 bits (2793), Expect = 0.0
Identity = 543/543 (100.00%), Postives = 543/543 (100.00%), Query Frame = 0


Query: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60
           MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF
Sbjct: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60

Query: 61  PLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESE 120
           PLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESE
Sbjct: 61  PLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESE 120

Query: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE 180
           SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE
Sbjct: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE 180

Query: 181 LFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240
           LFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA
Sbjct: 181 LFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240

Query: 241 VGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKDSE 300
           VGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKDSE
Sbjct: 241 VGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKDSE 300

Query: 301 IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360
           IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD
Sbjct: 301 IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360

Query: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420
           PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD
Sbjct: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420

Query: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480
           IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR
Sbjct: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480

Query: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540
           QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK
Sbjct: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540

Query: 541 AYF 543
           AYF
Sbjct: 541 AYF 543

[Close]

BLAST of Cp4.1LG13g09070 vs. NCBI nr
Match: XP_022993331.1 (uncharacterized protein LOC111489372 [Cucurbita maxima] >XP_022993332.1 uncharacterized protein LOC111489372 [Cucurbita maxima])

HSP 1 Score: 1063 bits (2750), Expect = 0.0
Identity = 533/543 (98.16%), Postives = 537/543 (98.90%), Query Frame = 0


Query: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60
           MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF
Sbjct: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60

Query: 61  PLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESE 120
           PLQYDMI+N PIYPPMPPQNRRTPPRIS DNSPELESSEDPVSELGFESWVDQKLISESE
Sbjct: 61  PLQYDMIINHPIYPPMPPQNRRTPPRISSDNSPELESSEDPVSELGFESWVDQKLISESE 120

Query: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE 180
           SASGKEGVVMDKAKRKYYNKRR+RMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE
Sbjct: 121 SASGKEGVVMDKAKRKYYNKRRRRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE 180

Query: 181 LFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240
           LFFYDTFAYPWEKDKHYKMVYQLE+KYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA
Sbjct: 181 LFFYDTFAYPWEKDKHYKMVYQLEKKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240

Query: 241 VGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKDSE 300
           VGVKPETK+EVTNGVD KGLVFFDGGRPEKDNKGS KDVTEKKVEEFFKCLKKVPAKDSE
Sbjct: 241 VGVKPETKVEVTNGVDEKGLVFFDGGRPEKDNKGSVKDVTEKKVEEFFKCLKKVPAKDSE 300

Query: 301 IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360
           IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD
Sbjct: 301 IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360

Query: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420
           PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD
Sbjct: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420

Query: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480
           IKKA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR
Sbjct: 421 IKKAAASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480

Query: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540
           QNLIFRVTCSKGTYIRSLCADLGK LGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK
Sbjct: 481 QNLIFRVTCSKGTYIRSLCADLGKVLGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540

Query: 541 AYF 543
           AYF
Sbjct: 541 AYF 543

[Close]

BLAST of Cp4.1LG13g09070 vs. NCBI nr
Match: XP_022938741.1 (uncharacterized protein LOC111444875 [Cucurbita moschata] >KAG7016215.1 truB [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1061 bits (2744), Expect = 0.0
Identity = 533/543 (98.16%), Postives = 538/543 (99.08%), Query Frame = 0


Query: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60
           MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF
Sbjct: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60

Query: 61  PLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESE 120
           PLQYDMI++RPIYPPMPPQNRRTP RISPDNSPELESSEDPVSELGFESWVDQKLISESE
Sbjct: 61  PLQYDMIIDRPIYPPMPPQNRRTPARISPDNSPELESSEDPVSELGFESWVDQKLISESE 120

Query: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE 180
           SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDE+KKTQDEGFVELKPEVVEFNTLHKREEE
Sbjct: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEEKKTQDEGFVELKPEVVEFNTLHKREEE 180

Query: 181 LFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240
           LFFYDTFAYPWEKDKHYKMVYQLE+KYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA
Sbjct: 181 LFFYDTFAYPWEKDKHYKMVYQLEKKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240

Query: 241 VGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKDSE 300
           VGVKPETK+EVTNGVD KGLVFFDGGRPEKDNKGS KDVTEKKVEEFFKCLKKVPAKDSE
Sbjct: 241 VGVKPETKVEVTNGVDEKGLVFFDGGRPEKDNKGSVKDVTEKKVEEFFKCLKKVPAKDSE 300

Query: 301 IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360
           IGQ  PYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD
Sbjct: 301 IGQMGPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360

Query: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420
           PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD
Sbjct: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420

Query: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480
           IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR
Sbjct: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480

Query: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540
           QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK
Sbjct: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540

Query: 541 AYF 543
           AYF
Sbjct: 541 AYF 543

[Close]

BLAST of Cp4.1LG13g09070 vs. NCBI nr
Match: KAG6578676.1 (hypothetical protein SDJN03_23124, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1060 bits (2741), Expect = 0.0
Identity = 532/543 (97.97%), Postives = 538/543 (99.08%), Query Frame = 0


Query: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60
           MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF
Sbjct: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60

Query: 61  PLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESE 120
           PLQYDMI++RPIYPPMPPQNRRTP RISPDNSPELESSEDPVSELGFESWVDQKLISESE
Sbjct: 61  PLQYDMIIDRPIYPPMPPQNRRTPARISPDNSPELESSEDPVSELGFESWVDQKLISESE 120

Query: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE 180
           SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDE+KKTQDEGFVELKPEVVEFNTLHKREEE
Sbjct: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEEKKTQDEGFVELKPEVVEFNTLHKREEE 180

Query: 181 LFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240
           LFFYDTFAYPWEKDKHYKMVYQLE+KYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA
Sbjct: 181 LFFYDTFAYPWEKDKHYKMVYQLEKKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240

Query: 241 VGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKDSE 300
           VGVKPETK+EVTNGVD KGLVFFDGGRP+KDNKGS KDVTEKKVEEFFKCLKKVPAKDSE
Sbjct: 241 VGVKPETKVEVTNGVDEKGLVFFDGGRPDKDNKGSVKDVTEKKVEEFFKCLKKVPAKDSE 300

Query: 301 IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360
           IGQ  PYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD
Sbjct: 301 IGQMGPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360

Query: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420
           PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD
Sbjct: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420

Query: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480
           IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR
Sbjct: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480

Query: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540
           QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK
Sbjct: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540

Query: 541 AYF 543
           AYF
Sbjct: 541 AYF 543

[Close]

BLAST of Cp4.1LG13g09070 vs. NCBI nr
Match: XP_038891059.1 (uncharacterized protein LOC120080471 [Benincasa hispida])

HSP 1 Score: 954 bits (2465), Expect = 0.0
Identity = 481/545 (88.26%), Postives = 502/545 (92.11%), Query Frame = 0


Query: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFP--NSLSLLSLRRSSTTST 60
           M  S AL HAS+FFIRST M SS +L  F   SNLNHLHRF   NSLS LS RR STTST
Sbjct: 1   MVKSSALFHASNFFIRSTFMPSSITLTLFLLPSNLNHLHRFAFRNSLSPLSPRRLSTTST 60

Query: 61  PFPLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISE 120
           PFPLQY+MI+NRP YPP P QNRRTP RI  DNSPE +SSEDP SE+GFESWVD+KLISE
Sbjct: 61  PFPLQYEMIINRPSYPPPPHQNRRTPTRIRSDNSPEFDSSEDPTSEMGFESWVDRKLISE 120

Query: 121 SESASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKRE 180
           SE+ SGKEGVVMDKA RKYYNKRRKRMYGSDSDED KTQDEGFVELKPEVVEFNTLHKRE
Sbjct: 121 SETISGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNKTQDEGFVELKPEVVEFNTLHKRE 180

Query: 181 EELFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVR 240
           EELFFYD FAYPWEKDKHYKMVYQLE+KYFPDEGLDKAFLGPGESNVEVNEQTKGRKGV+
Sbjct: 181 EELFFYDAFAYPWEKDKHYKMVYQLEKKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVK 240

Query: 241 KAVGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKD 300
           K VGV+PE K++VT+G+D KGLVFFD G+PE +NKGS KDVTEKKVEEFFKCLKKVPAKD
Sbjct: 241 KGVGVEPEMKVKVTHGMDDKGLVFFDEGKPENENKGSVKDVTEKKVEEFFKCLKKVPAKD 300

Query: 301 SEIGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGT 360
           SEIG TEPYLLTRHTELPAKWDSPCGTVVL+NKPKGWTSFTVCGKLRRLVKVKKVGHAGT
Sbjct: 301 SEIGPTEPYLLTRHTELPAKWDSPCGTVVLLNKPKGWTSFTVCGKLRRLVKVKKVGHAGT 360

Query: 361 LDPMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKD 420
           LDPMATGLLIVCVGKATKL +RYQGMIKSYSGVFRLGEATSTWDADS VIQREPWEHIKD
Sbjct: 361 LDPMATGLLIVCVGKATKLVERYQGMIKSYSGVFRLGEATSTWDADSPVIQREPWEHIKD 420

Query: 421 DDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLD 480
            DIKKA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISI+KFDIERSLD
Sbjct: 421 GDIKKAAASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFKFDIERSLD 480

Query: 481 DRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAI 540
           DRQNLIFRVTCSKGTYIRSLCADLGK LGSCAHLTALRRDSIG+YLADDAWEFKELEDAI
Sbjct: 481 DRQNLIFRVTCSKGTYIRSLCADLGKVLGSCAHLTALRRDSIGQYLADDAWEFKELEDAI 540

Query: 541 TKAYF 543
           TK YF
Sbjct: 541 TKGYF 545

[Close]

BLAST of Cp4.1LG13g09070 vs. ExPASy TrEMBL
Match: A0A6J1JSH8 (uncharacterized protein LOC111489372 OS=Cucurbita maxima OX=3661 GN=LOC111489372 PE=3 SV=1)

HSP 1 Score: 1063 bits (2750), Expect = 0.0
Identity = 533/543 (98.16%), Postives = 537/543 (98.90%), Query Frame = 0


Query: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60
           MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF
Sbjct: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60

Query: 61  PLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESE 120
           PLQYDMI+N PIYPPMPPQNRRTPPRIS DNSPELESSEDPVSELGFESWVDQKLISESE
Sbjct: 61  PLQYDMIINHPIYPPMPPQNRRTPPRISSDNSPELESSEDPVSELGFESWVDQKLISESE 120

Query: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE 180
           SASGKEGVVMDKAKRKYYNKRR+RMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE
Sbjct: 121 SASGKEGVVMDKAKRKYYNKRRRRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE 180

Query: 181 LFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240
           LFFYDTFAYPWEKDKHYKMVYQLE+KYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA
Sbjct: 181 LFFYDTFAYPWEKDKHYKMVYQLEKKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240

Query: 241 VGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKDSE 300
           VGVKPETK+EVTNGVD KGLVFFDGGRPEKDNKGS KDVTEKKVEEFFKCLKKVPAKDSE
Sbjct: 241 VGVKPETKVEVTNGVDEKGLVFFDGGRPEKDNKGSVKDVTEKKVEEFFKCLKKVPAKDSE 300

Query: 301 IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360
           IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD
Sbjct: 301 IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360

Query: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420
           PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD
Sbjct: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420

Query: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480
           IKKA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR
Sbjct: 421 IKKAAASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480

Query: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540
           QNLIFRVTCSKGTYIRSLCADLGK LGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK
Sbjct: 481 QNLIFRVTCSKGTYIRSLCADLGKVLGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540

Query: 541 AYF 543
           AYF
Sbjct: 541 AYF 543

[Close]

BLAST of Cp4.1LG13g09070 vs. ExPASy TrEMBL
Match: A0A6J1FDZ7 (uncharacterized protein LOC111444875 OS=Cucurbita moschata OX=3662 GN=LOC111444875 PE=3 SV=1)

HSP 1 Score: 1061 bits (2744), Expect = 0.0
Identity = 533/543 (98.16%), Postives = 538/543 (99.08%), Query Frame = 0


Query: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60
           MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF
Sbjct: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60

Query: 61  PLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESE 120
           PLQYDMI++RPIYPPMPPQNRRTP RISPDNSPELESSEDPVSELGFESWVDQKLISESE
Sbjct: 61  PLQYDMIIDRPIYPPMPPQNRRTPARISPDNSPELESSEDPVSELGFESWVDQKLISESE 120

Query: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE 180
           SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDE+KKTQDEGFVELKPEVVEFNTLHKREEE
Sbjct: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEEKKTQDEGFVELKPEVVEFNTLHKREEE 180

Query: 181 LFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240
           LFFYDTFAYPWEKDKHYKMVYQLE+KYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA
Sbjct: 181 LFFYDTFAYPWEKDKHYKMVYQLEKKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240

Query: 241 VGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKDSE 300
           VGVKPETK+EVTNGVD KGLVFFDGGRPEKDNKGS KDVTEKKVEEFFKCLKKVPAKDSE
Sbjct: 241 VGVKPETKVEVTNGVDEKGLVFFDGGRPEKDNKGSVKDVTEKKVEEFFKCLKKVPAKDSE 300

Query: 301 IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360
           IGQ  PYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD
Sbjct: 301 IGQMGPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360

Query: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420
           PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD
Sbjct: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420

Query: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480
           IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR
Sbjct: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480

Query: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540
           QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK
Sbjct: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540

Query: 541 AYF 543
           AYF
Sbjct: 541 AYF 543

[Close]

BLAST of Cp4.1LG13g09070 vs. ExPASy TrEMBL
Match: A0A1S3C8B0 (uncharacterized protein LOC103498118 OS=Cucumis melo OX=3656 GN=LOC103498118 PE=3 SV=1)

HSP 1 Score: 942 bits (2434), Expect = 0.0
Identity = 476/545 (87.34%), Postives = 501/545 (91.93%), Query Frame = 0


Query: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFP--NSLSLLSLRRSSTTST 60
           MA SPAL HASHFFIRSTLM SSKSL  F PLSNLNH HRF   NSLS LSLRR  T ST
Sbjct: 1   MAKSPALFHASHFFIRSTLMPSSKSLYLFLPLSNLNHPHRFAFRNSLSPLSLRRFCT-ST 60

Query: 61  PFPLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISE 120
           PFPLQY++I+NRP YP  P QN RTP RIS DN PEL SSEDP SELGF+SWVD+KLISE
Sbjct: 61  PFPLQYELIINRPSYPSPPHQNPRTPARISSDNPPELNSSEDPSSELGFDSWVDRKLISE 120

Query: 121 SESASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKRE 180
           S + SGKEGVVMDKA RKYYNKRRKRMYGSDSDED +TQDEGFVELKPEVVEFNTLHKRE
Sbjct: 121 SGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQDEGFVELKPEVVEFNTLHKRE 180

Query: 181 EELFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVR 240
           EELFF+D FAYPWEKDKHYKM+YQLE+KYFPD+GLDKAFLGPGESNVEVNEQTKGR+GV+
Sbjct: 181 EELFFHDAFAYPWEKDKHYKMLYQLEKKYFPDDGLDKAFLGPGESNVEVNEQTKGRQGVK 240

Query: 241 KAVGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKD 300
           KAV VKPET +EV NG+D KG+VFFD G+PEK+NKGS  DVTEKKVEEFFKCLKK PAKD
Sbjct: 241 KAVRVKPETNVEVANGMDDKGMVFFDEGKPEKENKGSVTDVTEKKVEEFFKCLKKGPAKD 300

Query: 301 SEIGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGT 360
           S+IGQ EPYLLTRH ELPA+WDSPCGTVVL+NKPKGWTSFTVCGKLRRLVKV+KVGHAGT
Sbjct: 301 SKIGQAEPYLLTRHMELPARWDSPCGTVVLLNKPKGWTSFTVCGKLRRLVKVQKVGHAGT 360

Query: 361 LDPMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKD 420
           LDPMATGLLIVCVGKATKL DRYQGMIK YSGVFRLGEATSTWDADS VIQREPWEHIKD
Sbjct: 361 LDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD 420

Query: 421 DDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLD 480
           DDIKKA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISI+KFDIERSLD
Sbjct: 421 DDIKKAAASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFKFDIERSLD 480

Query: 481 DRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAI 540
           DRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIG++LADDAWEFKELEDAI
Sbjct: 481 DRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGQHLADDAWEFKELEDAI 540

Query: 541 TKAYF 543
           TK YF
Sbjct: 541 TKGYF 544

[Close]

BLAST of Cp4.1LG13g09070 vs. ExPASy TrEMBL
Match: A0A0A0KP03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522940 PE=3 SV=1)

HSP 1 Score: 930 bits (2403), Expect = 0.0
Identity = 471/545 (86.42%), Postives = 497/545 (91.19%), Query Frame = 0


Query: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFP--NSLSLLSLRRSSTTST 60
           MA SPAL HASHFFIRSTLM SSKSL+ F PLSNLNHLHRF   NSLS LSLR  STT T
Sbjct: 16  MAKSPALFHASHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFSTT-T 75

Query: 61  PFPLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISE 120
            FPLQY++I+NRP YP  P QN RTP R+S DNSPEL SSEDP SELGF+SWVD+KLISE
Sbjct: 76  LFPLQYELIINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISE 135

Query: 121 SESASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKRE 180
             + SGKEGVVMDKA RKYYNKRRKRMYGSDSDED +TQ EGFVELKPEVVEFNTLHKRE
Sbjct: 136 GGTVSGKEGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGFVELKPEVVEFNTLHKRE 195

Query: 181 EELFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVR 240
           EELFF+D FAYPWEKDKHYKM+YQLE+KYFPD+GLDKAFLGPGESNVEVNEQTKGR+GVR
Sbjct: 196 EELFFHDAFAYPWEKDKHYKMLYQLEKKYFPDDGLDKAFLGPGESNVEVNEQTKGRQGVR 255

Query: 241 KAVGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKD 300
           KA  VKPE  +EV NG+D K +VFFD G+PEK+NKGS  DV+EKKVEEFFKCLKK PAKD
Sbjct: 256 KAGRVKPEMNVEVANGMDDKRMVFFDEGKPEKENKGSVVDVSEKKVEEFFKCLKKGPAKD 315

Query: 301 SEIGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGT 360
           S IGQ EPYLLTRH ELPAKWDSPCGTVVL+NKPKGWTSFTVCGKLRRLVKVKKVGHAGT
Sbjct: 316 SNIGQGEPYLLTRHMELPAKWDSPCGTVVLLNKPKGWTSFTVCGKLRRLVKVKKVGHAGT 375

Query: 361 LDPMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKD 420
           LDPMATGLLIVCVGKATKL DRYQGMIKSYSGVFRLGEATSTWDADS VIQREPWEHIKD
Sbjct: 376 LDPMATGLLIVCVGKATKLVDRYQGMIKSYSGVFRLGEATSTWDADSPVIQREPWEHIKD 435

Query: 421 DDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLD 480
           DDI+KA ASFCGEIWQVPPMFSAIKVGGE+MYEKARRGESIELSPR+ISI+KFDIERSLD
Sbjct: 436 DDIQKAAASFCGEIWQVPPMFSAIKVGGERMYEKARRGESIELSPRQISIFKFDIERSLD 495

Query: 481 DRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAI 540
           DRQNLIFRVTCSKGTYIRSLCADLGK LGSCAHLTALRRDSIG+YLADDAWEFKELEDAI
Sbjct: 496 DRQNLIFRVTCSKGTYIRSLCADLGKTLGSCAHLTALRRDSIGQYLADDAWEFKELEDAI 555

Query: 541 TKAYF 543
           TK YF
Sbjct: 556 TKGYF 559

[Close]

BLAST of Cp4.1LG13g09070 vs. ExPASy TrEMBL
Match: A0A6J1BZC1 (uncharacterized protein LOC111006617 OS=Momordica charantia OX=3673 GN=LOC111006617 PE=3 SV=1)

HSP 1 Score: 916 bits (2368), Expect = 0.0
Identity = 466/543 (85.82%), Postives = 489/543 (90.06%), Query Frame = 0


Query: 1   MATSPALSHASHFFIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPF 60
           MA SPAL HASHFFIRSTLMASSKSL    P SN+ HLHR  +S S LS RR STTSTP+
Sbjct: 1   MAKSPALIHASHFFIRSTLMASSKSLTLLVPFSNIKHLHRITSSFSALSFRRFSTTSTPY 60

Query: 61  PLQYDMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESE 120
           PLQY+MI+NRP YPP PP NRR P      +SPEL+ SEDP SELGFESWVDQKLISESE
Sbjct: 61  PLQYEMILNRPSYPPPPPHNRRRPAAA---DSPELKPSEDPSSELGFESWVDQKLISESE 120

Query: 121 SASGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQDEGFVELKPEVVEFNTLHKREEE 180
           + SGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDK+ ++EGFVELKPEVVEFNTLHKREEE
Sbjct: 121 AVSGKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKRPREEGFVELKPEVVEFNTLHKREEE 180

Query: 181 LFFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGESNVEVNEQTKGRKGVRKA 240
           LFFYDTFAYPWEKDKHYKMVYQLE+KYFPD+ LDKAFLGPGESNVEV +Q   RKG++KA
Sbjct: 181 LFFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLGPGESNVEVKQQ---RKGMKKA 240

Query: 241 VGVKPETKLEVTNGVDGKGLVFFDGGRPEKDNKGSAKDVTEKKVEEFFKCLKKVPAKDSE 300
           V V+  TK+E TNGVD  GL+FFD  R EKDNK    DV EKKVEEFFKCLKKVPAKDSE
Sbjct: 241 VEVRSGTKVEATNGVDDNGLIFFDEAREEKDNK----DVAEKKVEEFFKCLKKVPAKDSE 300

Query: 301 IGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360
           I QTEPYLLTRHTELP KWDSPCGTVVL+NKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD
Sbjct: 301 IIQTEPYLLTRHTELPVKWDSPCGTVVLLNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLD 360

Query: 361 PMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDD 420
           PMATGLLIVCVGKATKL DRYQGMIKSYSGVFRLGEATSTWDADS VIQREPWEHIKDDD
Sbjct: 361 PMATGLLIVCVGKATKLVDRYQGMIKSYSGVFRLGEATSTWDADSPVIQREPWEHIKDDD 420

Query: 421 IKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIYKFDIERSLDDR 480
           I+KA ASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISI+KFDIERSLDDR
Sbjct: 421 IQKAAASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFKFDIERSLDDR 480

Query: 481 QNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAWEFKELEDAITK 540
           QNLIFRVTCSKGTYIRSLCADLGK LGSCAHLTALRRDSIG+YLADDAWEFKELEDAITK
Sbjct: 481 QNLIFRVTCSKGTYIRSLCADLGKVLGSCAHLTALRRDSIGQYLADDAWEFKELEDAITK 533

Query: 541 AYF 543
            YF
Sbjct: 541 GYF 533

[Close]

BLAST of Cp4.1LG13g09070 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 649.4 bits (1674), Expect = 2.5e-186
Identity = 363/554 (65.52%), Postives = 418/554 (75.45%), Query Frame = 0


Query: 7   LSHASHF--FIRSTLMASSKSLAFFFPLSNLNHLHRFPNSLSLLSLRRSSTTSTPFPLQY 66
           ++ + HF   + S+   S  S  FF  +    ++H+ P   SL      STTST +PLQY
Sbjct: 1   MAKSLHFTRLMSSSARMSMTSPLFFSSVKPWRNIHK-PYLASLF----LSTTSTRYPLQY 60

Query: 67  DMIVNRPIYPPMPPQNRRTPPRISPDNSPELESSEDPVSELGFESWVDQKLISESESA-S 126
           DMI+NRP    +  QNRR PP+     +P+    E       F+SWVD KL  E E    
Sbjct: 61  DMIINRPTQSSL-SQNRRRPPKAIESGAPDSAEPE-------FDSWVDNKLAMEREQGRP 120

Query: 127 GKEGVVMDKAKRKYYNKRRKRMYGSDSDEDKKTQ--DEGFVELKPEVVEFNTLHKREEEL 186
           G     MDKAKRKYY+KRRKR+YGSDS+++  ++  DEGFVELKPEVVEF+ LH+REEEL
Sbjct: 121 GSGDPEMDKAKRKYYSKRRKRLYGSDSEDENSSRKSDEGFVELKPEVVEFDRLHQREEEL 180

Query: 187 FFYDTFAYPWEKDKHYKMVYQLERKYFPDEGLDKAFLGPGE--SNVEVNEQTKGRKGVRK 246
           +FYDTFAYPWEKDKHYKMVYQLE+KY+PD+ LDKAFL PGE     + + + +G+K V  
Sbjct: 181 YFYDTFAYPWEKDKHYKMVYQLEKKYYPDQCLDKAFLQPGEVLKKSDDSGKVRGKKKVVA 240

Query: 247 AVGVK-PETK---LEVTNGVDGKGLVFFDGGRPEKDNKGSAKD---VTEKKVEEFFKCLK 306
           A+G K  E K   +E  +  D K LVFFD  + +++ K S  D   VTEKKVE+FFK L 
Sbjct: 241 ALGGKRSEVKRIGMENCDEDDDK-LVFFDEVKEKEEKKKSEDDVVVVTEKKVEQFFKGLT 300

Query: 307 KVPAKD---SEIGQTEPYLLTRHTELPAKWDSPCGTVVLVNKPKGWTSFTVCGKLRRLVK 366
           K P +    S  G  EP+L+TR+ ELP +WD P GTV+LVNKPKGWTSFTVCGKLRRLVK
Sbjct: 301 KSPNEKGMASGGGDGEPFLVTRNGELPPRWDGPNGTVLLVNKPKGWTSFTVCGKLRRLVK 360

Query: 367 VKKVGHAGTLDPMATGLLIVCVGKATKLADRYQGMIKSYSGVFRLGEATSTWDADSAVIQ 426
           VKKVGHAGTLDPMATGLLIVCVGKATK+ DRYQGMIK YSGVFRLGEATST DADS VIQ
Sbjct: 361 VKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATSTLDADSPVIQ 420

Query: 427 REPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIY 486
           RE WEHIKDDDIKKA+ SF GEIWQVPPMFSAIKVGGEKMYEKARRGE++ELSPRRISI+
Sbjct: 421 RESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVGGEKMYEKARRGETVELSPRRISIF 480

Query: 487 KFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGEYLADDAW 544
           +FDIERSLDDRQNLIFRV CSKGTYIRSLCADL KALGSCAHLTALRRDSIGEY A+DAW
Sbjct: 481 QFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKALGSCAHLTALRRDSIGEYSANDAW 540

[Close]

BLAST of Cp4.1LG13g09070 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-21
Identity = 66/192 (34.38%), Postives = 95/192 (49.48%), Query Frame = 0


Query: 326 VVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLADRYQGMI 385
           V+ ++KP   +S  V   ++R+++V+K GH+GTLDP  TG LIVC+ +AT+L    QG  
Sbjct: 82  VINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 141

Query: 386 KSYSGVFRLGEATSTWDADSAVIQREPWEHIKDDDIKKAVASFCGEIWQVPPMFSAIKVG 445
           K Y  V RL  A      D A + R             A+ S  G ++Q PP+ SA+K  
Sbjct: 142 KEYVCVARLHSAV----PDVAKVAR-------------ALESLTGAVFQRPPLISAVK-- 201

Query: 446 GEKMYEKARRGESIELSPRRISIYKFDIERSLDDRQNLIFRVTCSKGTYIRSLCADLGKA 505
                             R  +IY+  +     DR  ++F V+C  GTYIR++C  LG  
Sbjct: 202 ---------------RQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLL 239

Query: 506 LGSCAHLTALRR 518
           LG   H+  LRR
Sbjct: 262 LGVGGHMQELRR 239

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g09070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9RB36	6.2e-49	46.40	tRNA pseudouridine synthase B OS=Flavobacterium johnsoniae (strain ATCC 17061 / ...	[more]
A0JUU8	1.1e-48	45.16	tRNA pseudouridine synthase B OS=Arthrobacter sp. (strain FB24) OX=290399 GN=tru...	[more]
A1R520	9.0e-48	46.54	tRNA pseudouridine synthase B OS=Paenarthrobacter aurescens (strain TC1) OX=2903...	[more]
Q47RU8	7.6e-47	45.00	tRNA pseudouridine synthase B OS=Thermobifida fusca (strain YX) OX=269800 GN=tru...	[more]
A3PY88	4.9e-46	46.05	tRNA pseudouridine synthase B OS=Mycobacterium sp. (strain JLS) OX=164757 GN=tru...	[more]

BLAST of Cp4.1LG13g09070 vs. NCBI nr


Match Name	Identity	Description
XP_023550635.1	100.00	uncharacterized protein LOC111808717 [Cucurbita pepo subsp. pepo]	[more]
XP_022993331.1	98.16	uncharacterized protein LOC111489372 [Cucurbita maxima] >XP_022993332.1 uncharac...	[more]
XP_022938741.1	98.16	uncharacterized protein LOC111444875 [Cucurbita moschata] >KAG7016215.1 truB [Cu...	[more]
KAG6578676.1	97.97	hypothetical protein SDJN03_23124, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038891059.1	88.26	uncharacterized protein LOC120080471 [Benincasa hispida]	[more]

BLAST of Cp4.1LG13g09070 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1JSH8	98.16	uncharacterized protein LOC111489372 OS=Cucurbita maxima OX=3661 GN=LOC111489372...	[more]
A0A6J1FDZ7	98.16	uncharacterized protein LOC111444875 OS=Cucurbita moschata OX=3662 GN=LOC1114448...	[more]
A0A1S3C8B0	87.34	uncharacterized protein LOC103498118 OS=Cucumis melo OX=3656 GN=LOC103498118 PE=...	[more]
A0A0A0KP03	86.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522940 PE=3 SV=1	[more]
A0A6J1BZC1	85.82	uncharacterized protein LOC111006617 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Cp4.1LG13g09070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14460.1	2.5e-186	65.52	Pseudouridine synthase family protein	[more]
AT3G57150.1	1.5e-21	34.38	homologue of NAP57	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 345..495 e-value: 1.7E-53 score: 181.0
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 317..542 e-value: 7.2E-89 score: 299.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..101
IPR014780	tRNA pseudouridine synthase II, TruB	TIGRFAM	TIGR00431	TIGR00431	coord: 325..534 e-value: 4.8E-67 score: 223.7
IPR014780	tRNA pseudouridine synthase II, TruB	PANTHER	PTHR13767	TRNA-PSEUDOURIDINE SYNTHASE	coord: 298..541
IPR014780	tRNA pseudouridine synthase II, TruB	HAMAP	MF_01080	TruB_bact	coord: 323..543 score: 15.910707
IPR014780	tRNA pseudouridine synthase II, TruB	CDD	cd02573	PseudoU_synth_EcTruB	coord: 326..537 e-value: 5.18046E-104 score: 309.375
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 496..539 e-value: 4.6E-10 score: 39.5
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 325..538

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g09070.1	Cp4.1LG13g09070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1990481	mRNA pseudouridine synthesis
biological_process	GO:0006400	tRNA modification
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding