Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGATTCCAACTTCAAAGATGACCTTCCCCTCCTCTCCAGCTTCTTCTCCGACAAAGCGGAGTCGAAACCGTCCCTCGACGACGACGACCGCGAGTTTTCGGGGATGGAATTAGGCAGCTCGCCATCATCATCCAAGGGTTTGTTTCATAGTTTACATCTTCATAATATCGATCATCATCATCATTATCATCATCATAATAATAACAATCACTTTCAATATCTCCATCAATACTTCCCTGTCGTCACCAGATCTGATTCGATCGATAATAGTAATAATTCTCATTACGATCTCGATCATCATCGCCGTCGTCTCGACGGGTCATTACAAAGCCTTCTTTCTGAGATGCCAAACCAATGTTTTGAACCAAAGTTTGAAGCTTTTAGCAATGAAGTCCCCAAAGATCACATCTTTGAAAGTGGGGCCAAGTTGATGCATGGGTTTGTGGGCTCAGGGGGTGTTTGGACGAATTTTCCCGGAAACTTTATGCCTCAATTTTCTCAGCCGCCAAACAGCCATTTAGGGTTGGGATTGACAGACACCATTATTGGGTATGATCACATCAAGAAGCGAAAGAGAATTCAGCTAAGAAAGGAAAACAAGCCTCCAAAGAAGCTTCCAAACATTATAAAGGGACAGTGGACTCCTCAAGAAGAC
mRNA sequence
TTTGATTCCAACTTCAAAGATGACCTTCCCCTCCTCTCCAGCTTCTTCTCCGACAAAGCGGAGTCGAAACCGTCCCTCGACGACGACGACCGCGACAATGAAGTCCCCAAAGATCACATCTTTGAAAGTGGGGCCAAGTTGATGCATGGGTTTGTGGGCTCAGGGGGTGTTTGGACGAATTTTCCCGGAAACTTTATGCCTCAATTTTCTCAGCCGCCAAACAGCCATTTAGGGTTGGGATTGACAGACACCATTATTGGGTATGATCACATCAAGAAGCGAAAGAGAATTCAGCTAAGAAAGGAAAACAAGCCTCCAAAGAAGCTTCCAAACATTATAAAGGGACAGTGGACTCCTCAAGAAGAC
Coding sequence (CDS)
TTTGATTCCAACTTCAAAGATGACCTTCCCCTCCTCTCCAGCTTCTTCTCCGACAAAGCGGAGTCGAAACCGTCCCTCGACGACGACGACCGCGACAATGAAGTCCCCAAAGATCACATCTTTGAAAGTGGGGCCAAGTTGATGCATGGGTTTGTGGGCTCAGGGGGTGTTTGGACGAATTTTCCCGGAAACTTTATGCCTCAATTTTCTCAGCCGCCAAACAGCCATTTAGGGTTGGGATTGACAGACACCATTATTGGGTATGATCACATCAAGAAGCGAAAGAGAATTCAGCTAAGAAAGGAAAACAAGCCTCCAAAGAAGCTTCCAAACATTATAAAGGGACAGTGGACTCCTCAAGAAGAC
Protein sequence
FDSNFKDDLPLLSSFFSDKAESKPSLDDDDRDNEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHIKKRKRIQLRKENKPPKKLPNIIKGQWTPQED
Homology
BLAST of Cp4.1LG13g09050 vs. NCBI nr
Match:
XP_023551683.1 (transcription factor MYB118-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 215 bits (548), Expect = 3.57e-66
Identity = 121/219 (55.25%), Postives = 122/219 (55.71%), Query Frame = 0
Query: 1 FDSNFKDDLPLLSSFFSDKAESKPSLDDDDRD---------------------------- 60
FDSNFKDDLPLLSSFFSDKAESKPSLDDDDR+
Sbjct: 3 FDSNFKDDLPLLSSFFSDKAESKPSLDDDDREFSGMELGSSPSSSKGLFHSLHLHNIDHH 62
Query: 61 ------------------------------------------------------------ 120
Sbjct: 63 HHYHHHNNNNHFQYLHQYFPVVTRSDSIDNSNNSHYDLDHHRRRLDGSLQSLLSEMPNQC 122
Query: 121 ---------NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTD 122
NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTD
Sbjct: 123 FEPKFEAFSNEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTD 182
BLAST of Cp4.1LG13g09050 vs. NCBI nr
Match:
XP_022939461.1 (transcription factor MYB118-like [Cucurbita moschata])
HSP 1 Score: 215 bits (547), Expect = 3.99e-66
Identity = 119/210 (56.67%), Postives = 120/210 (57.14%), Query Frame = 0
Query: 1 FDSNFKDDLPLLSSFFSDKAESKPSLDDDDR----------------------------- 60
FDSNFKDDLPLLSSFFSDKAESKP LDDDDR
Sbjct: 3 FDSNFKDDLPLLSSFFSDKAESKPPLDDDDRKFSRMELGSSPSSSKGLFHSLLDHHNHNN 62
Query: 61 -----------------------------------------------------------D 120
Sbjct: 63 NHFQYLHQYFPVVTRSDSINNSNNSHYDLDHHRRRLDGSLQSLLSEMPTQCFEPKFEAFS 122
Query: 121 NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHIK 122
NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHIK
Sbjct: 123 NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHIK 182
BLAST of Cp4.1LG13g09050 vs. NCBI nr
Match:
KAG6578660.1 (Transcription factor MYB118, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 212 bits (539), Expect = 4.05e-65
Identity = 118/211 (55.92%), Postives = 119/211 (56.40%), Query Frame = 0
Query: 1 FDSNFKDDLPLLSSFFSDKAESKPSLDDDDR----------------------------- 60
FDSNFKDDLPLLSSFFSDKAESKP LDDDD
Sbjct: 3 FDSNFKDDLPLLSSFFSDKAESKPPLDDDDDRKFSRMELGSSPSSSKGLFHSLLDHHNHN 62
Query: 61 ------------------------------------------------------------ 120
Sbjct: 63 NNHFQYLHQYFPVVTRSDSIDNSNNSHYDLDHHRRRLDGSLQSLLSEMPTQCFEPKFEAF 122
Query: 121 DNEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHI 122
NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHI
Sbjct: 123 SNEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHI 182
BLAST of Cp4.1LG13g09050 vs. NCBI nr
Match:
KAG7016199.1 (Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 212 bits (539), Expect = 6.52e-65
Identity = 118/211 (55.92%), Postives = 119/211 (56.40%), Query Frame = 0
Query: 1 FDSNFKDDLPLLSSFFSDKAESKPSLDDDDR----------------------------- 60
FDSNFKDDLPLLSSFFSDKAESKP LDDDD
Sbjct: 3 FDSNFKDDLPLLSSFFSDKAESKPPLDDDDDRKFSRMELGSSPSSSKGLFHSLLDHHNHN 62
Query: 61 ------------------------------------------------------------ 120
Sbjct: 63 NNHFQYLHQYFPVVTRSDSIDNSNNSHYDLDHHRRRLDGSLQSLLSEMPTQCFEPKFEAF 122
Query: 121 DNEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHI 122
NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHI
Sbjct: 123 SNEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHI 182
BLAST of Cp4.1LG13g09050 vs. NCBI nr
Match:
XP_022992905.1 (transcription factor MYB118-like [Cucurbita maxima])
HSP 1 Score: 201 bits (512), Expect = 7.37e-61
Identity = 113/211 (53.55%), Postives = 114/211 (54.03%), Query Frame = 0
Query: 1 FDSNFKDDLPLLSSFFSDKAESKPSLDDDDR----------------------------- 60
FDSNFKDDLPLLSSFFSDKAESKP LDDDD
Sbjct: 3 FDSNFKDDLPLLSSFFSDKAESKPPLDDDDDREFSGMELGCSPSSSKGLFQSLLDHHHHN 62
Query: 61 ------------------------------------------------------------ 120
Sbjct: 63 NNHFQYLHQYFPVVNRSDSIDNSNNSHYDLDHHRRRLDGSLQSLLSEMPTQCFDPKFEAF 122
Query: 121 DNEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHI 122
NE PKD FESGAK MHGF GSGGVWTNFPGNFMPQFSQPPNSHLGLGL+DTIIGYDHI
Sbjct: 123 SNEAPKDQSFESGAKFMHGFAGSGGVWTNFPGNFMPQFSQPPNSHLGLGLSDTIIGYDHI 182
BLAST of Cp4.1LG13g09050 vs. ExPASy TrEMBL
Match:
A0A6J1FFZ3 (transcription factor MYB118-like OS=Cucurbita moschata OX=3662 GN=LOC111445358 PE=4 SV=1)
HSP 1 Score: 215 bits (547), Expect = 1.93e-66
Identity = 119/210 (56.67%), Postives = 120/210 (57.14%), Query Frame = 0
Query: 1 FDSNFKDDLPLLSSFFSDKAESKPSLDDDDR----------------------------- 60
FDSNFKDDLPLLSSFFSDKAESKP LDDDDR
Sbjct: 3 FDSNFKDDLPLLSSFFSDKAESKPPLDDDDRKFSRMELGSSPSSSKGLFHSLLDHHNHNN 62
Query: 61 -----------------------------------------------------------D 120
Sbjct: 63 NHFQYLHQYFPVVTRSDSINNSNNSHYDLDHHRRRLDGSLQSLLSEMPTQCFEPKFEAFS 122
Query: 121 NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHIK 122
NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHIK
Sbjct: 123 NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHIK 182
BLAST of Cp4.1LG13g09050 vs. ExPASy TrEMBL
Match:
A0A6J1JX07 (transcription factor MYB118-like OS=Cucurbita maxima OX=3661 GN=LOC111489101 PE=4 SV=1)
HSP 1 Score: 201 bits (512), Expect = 3.57e-61
Identity = 113/211 (53.55%), Postives = 114/211 (54.03%), Query Frame = 0
Query: 1 FDSNFKDDLPLLSSFFSDKAESKPSLDDDDR----------------------------- 60
FDSNFKDDLPLLSSFFSDKAESKP LDDDD
Sbjct: 3 FDSNFKDDLPLLSSFFSDKAESKPPLDDDDDREFSGMELGCSPSSSKGLFQSLLDHHHHN 62
Query: 61 ------------------------------------------------------------ 120
Sbjct: 63 NNHFQYLHQYFPVVNRSDSIDNSNNSHYDLDHHRRRLDGSLQSLLSEMPTQCFDPKFEAF 122
Query: 121 DNEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNSHLGLGLTDTIIGYDHI 122
NE PKD FESGAK MHGF GSGGVWTNFPGNFMPQFSQPPNSHLGLGL+DTIIGYDHI
Sbjct: 123 SNEAPKDQSFESGAKFMHGFAGSGGVWTNFPGNFMPQFSQPPNSHLGLGLSDTIIGYDHI 182
BLAST of Cp4.1LG13g09050 vs. ExPASy TrEMBL
Match:
A0A5A7T7L1 (Transcription factor MYB98 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001270 PE=4 SV=1)
HSP 1 Score: 166 bits (419), Expect = 5.60e-48
Identity = 88/132 (66.67%), Postives = 93/132 (70.45%), Query Frame = 0
Query: 1 FDSNFKDDLPLLSSFFSDKAESKPSLDDDDRDNEVPKDHIFESGAKLMHGFVGSG---GV 60
FDSNFKDDLPL SSFFSDK ESKP L DD DN+ E G+ G V
Sbjct: 3 FDSNFKDDLPLFSSFFSDKTESKPQLVLDDNDNDHGDFSGMELGSSSSPSSSSKGCGNNV 62
Query: 61 WTNFPGNFMPQFSQPPNSHLGLGLTDT-------IIGYDHIKKRKRIQLRKENKPPKKLP 120
WTNFPGNF+PQFSQ PNSHLGLG + + IGYDH KKRKRIQLRKENKPPKKLP
Sbjct: 63 WTNFPGNFLPQFSQLPNSHLGLGSSSSSSTGNFSFIGYDHNKKRKRIQLRKENKPPKKLP 122
Query: 121 NIIKGQWTPQED 122
NIIKGQWTPQED
Sbjct: 123 NIIKGQWTPQED 134
BLAST of Cp4.1LG13g09050 vs. ExPASy TrEMBL
Match:
A0A0A0KSF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G524700 PE=4 SV=1)
HSP 1 Score: 147 bits (371), Expect = 8.42e-42
Identity = 100/231 (43.29%), Postives = 106/231 (45.89%), Query Frame = 0
Query: 1 FDSNFKDDLPLLSSFFSDKAESKPSL--DDDDRD-------------------------- 60
FDSNFKDDLPL SSFFSDK ESKP L DD+D D
Sbjct: 3 FDSNFKDDLPLFSSFFSDKTESKPQLVLDDNDNDHGQFSGMELGRSSSPSSSSKGLFHSL 62
Query: 61 ------------------------------------------------------------ 120
Sbjct: 63 QLHNNFENHNHNQYLHQYFPINGSSDHHHHHPMNNNNDNHFSIDHGSLQNLLSEIPITTQ 122
Query: 121 ------------NEVPKDHIFES-GA-KLMHGFVGSGG-VWTNFPGNFMPQFSQPPNSHL 122
NE KD FE+ GA K MHGF+G G VWTNFPGNF+PQFSQ PNSHL
Sbjct: 123 YFDPKIEPNFTNNEFSKDQSFENIGANKFMHGFLGCGNNVWTNFPGNFLPQFSQLPNSHL 182
BLAST of Cp4.1LG13g09050 vs. ExPASy TrEMBL
Match:
A0A6J1HHA2 (transcription factor MYB118-like OS=Cucurbita moschata OX=3662 GN=LOC111463472 PE=4 SV=1)
HSP 1 Score: 140 bits (354), Expect = 1.99e-37
Identity = 95/239 (39.75%), Postives = 103/239 (43.10%), Query Frame = 0
Query: 1 FDSNFKDDLPLLSSFFSDKAESKPSLDDDDRD---------------------------- 60
FDSNFKDDLPLLSSFFSDK ESK L+DDD D
Sbjct: 3 FDSNFKDDLPLLSSFFSDKPESKRKLNDDDNDDDTGEFSAMELATSPSSSKGLFHNLQLH 62
Query: 61 ------------------------------------------------------------ 120
Sbjct: 63 NFNRDREHDHDHNHNHNRYHQYLHHFPINGSDSSSHHELDRHQFSIAGSLQTLLSGMPTQ 122
Query: 121 ----------NEVPKDHIFESGAKLMHGFVGSGGVWTNFPGNFMPQFSQPPNS------H 122
NE KDH FE+GAK MHG +GS VWTNFPGNF+PQFSQPPNS H
Sbjct: 123 TFDPNFQPFGNEFSKDHTFENGAKFMHGLLGSRAVWTNFPGNFVPQFSQPPNSSSSSSTH 182
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_023551683.1 | 3.57e-66 | 55.25 | transcription factor MYB118-like [Cucurbita pepo subsp. pepo] | [more] |
| XP_022939461.1 | 3.99e-66 | 56.67 | transcription factor MYB118-like [Cucurbita moschata] | [more] |
| KAG6578660.1 | 4.05e-65 | 55.92 | Transcription factor MYB118, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| KAG7016199.1 | 6.52e-65 | 55.92 | Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. ar... | [more] |
| XP_022992905.1 | 7.37e-61 | 53.55 | transcription factor MYB118-like [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1FFZ3 | 1.93e-66 | 56.67 | transcription factor MYB118-like OS=Cucurbita moschata OX=3662 GN=LOC111445358 P... | [more] |
| A0A6J1JX07 | 3.57e-61 | 53.55 | transcription factor MYB118-like OS=Cucurbita maxima OX=3661 GN=LOC111489101 PE=... | [more] |
| A0A5A7T7L1 | 5.60e-48 | 66.67 | Transcription factor MYB98 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
| A0A0A0KSF9 | 8.42e-42 | 43.29 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G524700 PE=4 SV=1 | [more] |
| A0A6J1HHA2 | 1.99e-37 | 39.75 | transcription factor MYB118-like OS=Cucurbita moschata OX=3662 GN=LOC111463472 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
