Cp4.1LG13g08320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g08320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG13: 8102137 .. 8103975 (+)
RNA-Seq ExpressionCp4.1LG13g08320
SyntenyCp4.1LG13g08320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTCCGACGGAATTCTCGAGTCGATTGCTCGCCAGAAGTGGGCCGATTGGGAGAATGCGAGGCGCTATGCTGAAAATTTCTGCCTCGAGCTCATAGACTGTGTTGCAGATAACCCAATCCGCCGCTTCTATTGCTTTGTTATTTCTTAAGCAAACTTGAAATATGATTTTCTCTGTCTCTTTGTCACCAACACATGCCCAAACCAAGCTTTCTGTTCTTGTTGTGGGTATTGATGATGCTAACATAATCTCCTCGCTCTTCAGCAATGTTCCTGTCGGAAAAATGAAACATGTTCATATTTGTGCCTGTCCAGTTCCATTTGTTCAGTTCCATTTGTTTTGGTTGGGAGTGAGTCTCACGTTAGCTCAAGGGCCACAAAGTGCCCCAGTTAGTATTCCTCGCTTATAAACTCATAATCACACCTCCCCTCGAACAAAGTGCGTCTCCCCTTAATCGAGGCTTGACTCATTTAGAGTCTTAGTAATTTTTTACTGCCTTCAAGGAGGCTCGACTCAAGTTTGAGGAGTTACCAATCTATTGGCACGACTAAGTTTAGGGCATGGCTCTGATATCATGTTAGACGAACACAAGTTTGAGGAGTTACCAATCTATTGGCACGACTAAATTTAAGGCATGGCTCTGATACCATGTTAAACGAACACGACTCTCAACAATGGTATGATATTGTCCACTTTGAGTATAAGCTCTCATGGCTTTGCCCCCGAAAGGCCTCATACATGGAGTTAGTATTCGTGGCTTATAAACCTATGACCATTCCTAAATTAGCCAACATGGGACTTCCATCCTCTAACAGTCAAAGTGATTCAGTGTTAATAAATTGTGTATTTTGTTCAACTGCTCCATAGACCTTACTACAGGTTCTATAGAGTACTTGTTAGAATCGCACTTTTAATGGTAGCGGACTGACGATTGTGCGGCACTCACTTTCCAACGACAGGTGAGCTAAACCAATTCGTTCTTGTGTCGCCTACGACCAAGAGACATATGCTCGAGCCTCTAGGCTCGGTTTTAAGAGAAGGTTTTAGAAAACAAAGGTAGAAAGAGACGTTATATAAGAAAGCAAGAGAGAAATAACCATAGCTTACGGTATATAACCTTGAGTAGAGAGATACGAGAAGGGAGGAGAGTTTATAAGCAAAGAACACGATCTCGGTTGGTATGAAGAGTGGACAATATATCATTATGAAGAGCCGTGATTTCTTACCATCAGAATCAATTAGTTTTTGTTCAATCAGCTTTGGGATTCTGAATTGCATAGCTAACAACGCAGCAGCGGCAGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCCAAAGCCCACCCGAGATTCTCATCAGCAATAACACACGTAATTCCGCGACCCCCTAATCCCTCGATCGTGTTTATCAGCTGTTCCAGCTTCAAGGGCATGACTTGCATCATTGTGTTAGTTAATTTACCAAGATCATTTCGGTCCTCCCCAGGCTTCATGCCATCGGGGAGTGAAACCAGGTGGATATTGCCATCGCTTACACGTTCAGTTCCTGCTAGAGCGCCCATTACACGATTGTGATTATACTCCGTGTTCAAGAACGTGATTTCGAACCCCTGTTTGGCCAAGCACAAAGAGAGCTCCAACATGGGGATTACATGGCCTTGCGCTGGATAAGGAATGGCCAAGATGTGGCGGCCGCTCCCCATTTTGCTTCTCTGTTACTTCTGAGCTTCATTCTACCACTCTATATATACACACACACCCGACATGGAATGGCTGTTCATGGAGGCGCCAATGCATCAGGCGACGGGCGGCATAAAAGATTCTGGCTT

mRNA sequence

GTGTCCGACGGAATTCTCGAGTCGATTGCTCGCCAGAAGTGGGCCGATTGGGAGAATGCGAGGCGCTATGCTGAAAATTTCTGCCTCGAGCTCATAGACTGTGTTGCAGATAACCCAATCCGCCGCTTCTATTGCTTTAGCCGTGATTTCTTACCATCAGAATCAATTAGTTTTTGTTCAATCAGCTTTGGGATTCTGAATTGCATAGCTAACAACGCAGCAGCGGCAGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCCAAAGCCCACCCGAGATTCTCATCAGCAATAACACACAGCGCCCATTACACGATTGTGATTATACTCCGTGTTCAAGAACGTGATTTCGAACCCCTGTTTGGCCAAGCACAAAGAGAGCTCCAACATGGGGATTACATGGCCTTGCGCTGGATAAGGAATGGCCAAGATGTGGCGGCCGCTCCCCATTTTGCTTCTCTGTTACTTCTGAGCTTCATTCTACCACTCTATATATACACACACACCCGACATGGAATGGCTGTTCATGGAGGCGCCAATGCATCAGGCGACGGGCGGCATAAAAGATTCTGGCTT

Coding sequence (CDS)

GTGTCCGACGGAATTCTCGAGTCGATTGCTCGCCAGAAGTGGGCCGATTGGGAGAATGCGAGGCGCTATGCTGAAAATTTCTGCCTCGAGCTCATAGACTGTGTTGCAGATAACCCAATCCGCCGCTTCTATTGCTTTAGCCGTGATTTCTTACCATCAGAATCAATTAGTTTTTGTTCAATCAGCTTTGGGATTCTGAATTGCATAGCTAACAACGCAGCAGCGGCAGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCCAAAGCCCACCCGAGATTCTCATCAGCAATAACACACAGCGCCCATTACACGATTGTGATTATACTCCGTGTTCAAGAACGTGATTTCGAACCCCTGTTTGGCCAAGCACAAAGAGAGCTCCAACATGGGGATTACATGGCCTTGCGCTGGATAAGGAATGGCCAAGATGTGGCGGCCGCTCCCCATTTTGCTTCTCTGTTACTTCTGAGCTTCATTCTACCACTCTATATATACACACACACCCGACATGGAATGGCTGTTCATGGAGGCGCCAATGCATCAGGCGACGGGCGGCATAAAAGATTCTGGCTT

Protein sequence

VSDGILESIARQKWADWENARRYAENFCLELIDCVADNPIRRFYCFSRDFLPSESISFCSISFGILNCIANNAAAAGQKATRRILIFSATSKAHPRFSSAITHSAHYTIVIILRVQERDFEPLFGQAQRELQHGDYMALRWIRNGQDVAAAPHFASLLLLSFILPLYIYTHTRHGMAVHGGANASGDGRHKRFWL
Homology
[Close]
BLAST of Cp4.1LG13g08320 vs. ExPASy TrEMBL
Match: A0A0A0KVT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638460 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.28e-18
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 48  RDFLPSESISFCSISFGILNCIANNAAAAGQKATRRILIFSATSKAHPRFSS 99
           + FLPSESISFCSI FG+LNCIANNAAAAGQKATR I IF+ATSKAHPRF +
Sbjct: 98  KPFLPSESISFCSIKFGMLNCIANNAAAAGQKATRGIFIFAATSKAHPRFQA 149

[Close]
BLAST of Cp4.1LG13g08320 vs. ExPASy TrEMBL
Match: A0A0A0KSG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638450 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.61e-17
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 48  RDFLPSESISFCSISFGILNCIANNAAAAGQKATRRILIFSATSKAHPRFSS 99
           + FLPSESISFCSI FG+LN IANNAAAAGQKATR I IF+ATSKAHPRF +
Sbjct: 95  KPFLPSESISFCSIKFGMLNSIANNAAAAGQKATRGIFIFAATSKAHPRFQA 146

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g08320 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g08320 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g08320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVT11.28e-1882.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638460 PE=4 SV=1[more]
A0A0A0KSG13.61e-1780.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638450 PE=4 SV=1[more]
BLAST of Cp4.1LG13g08320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g08320.1Cp4.1LG13g08320.1mRNA