Cp4.1LG13g07580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g07580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Reticulon-like protein
Location	Cp4.1LG13: 8523100 .. 8525579 (-)
RNA-Seq Expression	Cp4.1LG13g07580
Synteny	Cp4.1LG13g07580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGAGTTCTATATATATATCTTGAAAATAATAATAAGCATAAAACAGCTGTAAGGTTTGCATTAAAATAATAGAAGAAGACCCAAACCCCCTCTACCAAAAGGAAGGAGAAAGGGAAAAAAATAAAATAAAATAAATAAATAAATAAAAAAAGCGACTTTTTCATTTTCAGCGTCGGAGGGCAGAAGAAAGAGGGAAGGCTTTGAACATGGAAATAAAAAATTCTTGAGTTGCGTGAATTCCATTTCGAGCCTTGCCTTGGGAATTCTCGATCATACCGAAACCTTCACAACTTTTCAACCTTCAATTTTGACTCTGAATCTTCTGACCGGACAATTCGGAAGTGCAATGGTCGATAATTGCGACAGCGCCGGCAACGTAGACGCCGACGGAAAAGACACAGCCTGCACCTCATGTGACCGCCCAGCTTCACTCCACCAGTCCATGGGTGGCGGCAAAGGTATTTAATTCTCCGTCCGCTAAATTTCTGTTTCTCGATCAATTTCGTGTTTCTGAATTATATTCCTTCGCTTCCCTTCCGAGAATCGGCGTTGAATCTGTTTGTTGCAATCGGTGATGGTTGAGGGTTTTGATTGTTTACGAAACATAGGATAATATGAAGCTTGATTTCGAGTATGTTCTGAAATGGTTTGCCAGATTCGTCCATGTTCTATTCATTTATCTGTTTCCCTTTTTGCATTTGAATTAAGACTTCGACCGATTGAAACTTGGAGTTTTTGTTACCTCTTGCTTTGGGAATCAGATTCTACATTAGCTATTCCAGTTTTTCAGATTCTTTCTTTGTGTTTTAGAAGGAACAAAAAATTACGACATCCCCTTTCTGTTTGGATAATCAAGAATTTAACTCTTCCTTCTTTTGCTTAGCGGCTGATATTCTACTATGGAAACAGCGGCATGTTTCTTTCGGCATTGTTGTTGTTGCTACAGTATTTTGGCTTCTAATTGAGCACTCTGGATTGCCATTGTTGACAACATGTTCGGATGTCTTGCTGGTTTTGGTCGTCCTATTGTTTCTTCGTGCCAACTTTGCTGCGTTTCGAAAGAAGTATGGCTTTCGCTGACTTATGTTCTGATTCACTTTCAAGTTCTTGCTTACGATCTCTTACAGAATACCTTTTTCTTCTTTCCAGCAGATAATGTGTTTTTCCTGTTGGATCTTCTTCATTTTCCTTCTGTGCAGGCAGCTTCAAACATTACCACAGCTGGTCTTGTCCGAGGAATTCGTCGATAATGTCGCTGCATCATTTCGGGCGAAAATCAATAATGCATTACTTGTAGCTCATGATATCACACTTGGCAATGATTTCAAACTCTTTTTCAGGGTTAGTAGTTTATTGGATACTTGAATTATATGGGCAAAACTGAAAATTATTCATTGGCTTTAAGTACTTTTCATCTGAAAAGAATAGATCGATATCGATATACACCCATCGATCGACGCCATTTGGATTGGCAACCAAGTGTTGCTCAAGCCTGAGGCAGCAAATGCTTACAGGACAGTTTAAAGAATACATAAACTCGATCTTCACTTCAACCTGATAATGTTGCTTTTCTGTTCTTCGTTTTTGGCTAACCTTGCAAACACCTTTGCAGATGGTGATCTGTTTGTGGCTTTTATCCGTCCTTGGTAGCTACCTTTCTTTCTTCACCTTTGCATATATCGGTACGTACGAACATCCTAAAACGCTTAGTATGACATATTTTTAGTTCATATAAGTTTCATTTGTGGGTAAATTATGGCAATCATTCCACCTGTAGTTTACTTTTGATCCTTGTCAATGAGTAAACGTTCAAGAATTTGGTTTGTTTCTGGTCCATTCACCATGTTCTTTAATGCTCTCTCATTGTCATGACCTTCATTTTCATGCTTTTTACTCAGTTTACCGATCTAGCAAATGTAATTATACTCCCCTCCCCCAACCTGTGATATTGTTTTTTGTTCATTTAACTCGATGACAGGAACAATCATCTCGATAACTGTCCCCGCCTTGTACAGCAAATACGATAAACACGTTGACAGATGCTGCGGAATGATCCGCCAACAATTTAGAAAGCATTATAGAGTGATGGATGAGAGTGTTTTCAGCAGACTCCCTGGTAGTTTGTCGAAGGATAAACATCAATGAATAATGCTACCTATAGTTTTCTGCAGTTGTACTAAACCACGGGATAATTGTATTACTGTTTCATCACAAATGAATGCCTGGTTAACTGGATTCTTGAAGGTTATTGGATACCTATGAACATGTTTATTTCTGTATATTTATGAATACTTGTAAATGGGGCAAGCTTTTGAATCTGGTTGGTCTGGATCTAATCCTGAGGTTGAATTCCTTTTGGTCCAGTATGGACCAACCCACAAAAGGGCCCATTGTTGAATACTCAACCCCAAATCATTTAGTTCATATTTGTTCTCCATTTCTCTCCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

TTGGAGTTCTATATATATATCTTGAAAATAATAATAAGCATAAAACAGCTGTAAGGTTTGCATTAAAATAATAGAAGAAGACCCAAACCCCCTCTACCAAAAGGAAGGAGAAAGGGAAAAAAATAAAATAAAATAAATAAATAAATAAAAAAAGCGACTTTTTCATTTTCAGCGTCGGAGGGCAGAAGAAAGAGGGAAGGCTTTGAACATGGAAATAAAAAATTCTTGAGTTGCGTGAATTCCATTTCGAGCCTTGCCTTGGGAATTCTCGATCATACCGAAACCTTCACAACTTTTCAACCTTCAATTTTGACTCTGAATCTTCTGACCGGACAATTCGGAAGTGCAATGGTCGATAATTGCGACAGCGCCGGCAACGTAGACGCCGACGGAAAAGACACAGCCTGCACCTCATGTGACCGCCCAGCTTCACTCCACCAGTCCATGGGTGGCGGCAAAGCGGCTGATATTCTACTATGGAAACAGCGGCATGTTTCTTTCGGCATTGTTGTTGTTGCTACAGTATTTTGGCTTCTAATTGAGCACTCTGGATTGCCATTGTTGACAACATGTTCGGATGTCTTGCTGGTTTTGGTCGTCCTATTGTTTCTTCGTGCCAACTTTGCTGCGTTTCGAAAGAAGCAGCTTCAAACATTACCACAGCTGGTCTTGTCCGAGGAATTCGTCGATAATGTCGCTGCATCATTTCGGGCGAAAATCAATAATGCATTACTTGTAGCTCATGATATCACACTTGGCAATGATTTCAAACTCTTTTTCAGGATGGTGATCTGTTTGTGGCTTTTATCCGTCCTTGGTAGCTACCTTTCTTTCTTCACCTTTGCATATATCGGAACAATCATCTCGATAACTGTCCCCGCCTTGTACAGCAAATACGATAAACACGTTGACAGATGCTGCGGAATGATCCGCCAACAATTTAGAAAGCATTATAGAGTGATGGATGAGAGTGTTTTCAGCAGACTCCCTGGTAGTTTGTCGAAGGATAAACATCAATGAATAATGCTACCTATAGTTTTCTGCAGTTGTACTAAACCACGGGATAATTGTATTACTGTTTCATCACAAATGAATGCCTGGTTAACTGGATTCTTGAAGGTTATTGGATACCTATGAACATGTTTATTTCTGTATATTTATGAATACTTGTAAATGGGGCAAGCTTTTGAATCTGGTTGGTCTGGATCTAATCCTGAGGTTGAATTCCTTTTGGTCCAGTATGGACCAACCCACAAAAGGGCCCATTGTTGAATACTCAACCCCAAATCATTTAGTTCATATTTGTTCTCCATTTCTCTCCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGTCGATAATTGCGACAGCGCCGGCAACGTAGACGCCGACGGAAAAGACACAGCCTGCACCTCATGTGACCGCCCAGCTTCACTCCACCAGTCCATGGGTGGCGGCAAAGCGGCTGATATTCTACTATGGAAACAGCGGCATGTTTCTTTCGGCATTGTTGTTGTTGCTACAGTATTTTGGCTTCTAATTGAGCACTCTGGATTGCCATTGTTGACAACATGTTCGGATGTCTTGCTGGTTTTGGTCGTCCTATTGTTTCTTCGTGCCAACTTTGCTGCGTTTCGAAAGAAGCAGCTTCAAACATTACCACAGCTGGTCTTGTCCGAGGAATTCGTCGATAATGTCGCTGCATCATTTCGGGCGAAAATCAATAATGCATTACTTGTAGCTCATGATATCACACTTGGCAATGATTTCAAACTCTTTTTCAGGATGGTGATCTGTTTGTGGCTTTTATCCGTCCTTGGTAGCTACCTTTCTTTCTTCACCTTTGCATATATCGGAACAATCATCTCGATAACTGTCCCCGCCTTGTACAGCAAATACGATAAACACGTTGACAGATGCTGCGGAATGATCCGCCAACAATTTAGAAAGCATTATAGAGTGATGGATGAGAGTGTTTTCAGCAGACTCCCTGGTAGTTTGTCGAAGGATAAACATCAATGA

Protein sequence

MVDNCDSAGNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ

Homology

[Close]

BLAST of Cp4.1LG13g07580 vs. ExPASy Swiss-Prot
Match: Q8GYH6 (Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.0e-66
Identity = 122/223 (54.71%), Postives = 173/223 (77.58%), Query Frame = 0


Query: 6   DSAGNVDA--DGKDTACTSCD-----RPASLHQSMGGGKAADILLWKQRHVSFGIVVVAT 65
           DS  ++D   DG++   +S D     R  ++HQ MGGGKAAD+LLW++RH+S G+++++T
Sbjct: 2   DSLSDIDGDFDGRNEGGSSSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIIST 61

Query: 66  VFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAA 125
           V WL+ E SGLP L+  SDVLL+++++ F+ A  +AFR +QL +LP+LVLSEE V++ AA
Sbjct: 62  VAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAA 121

Query: 126 SFRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPA 185
           SFR K+N+ L++AHD+T+GNDF+LFF++VICLWLLS +GSY+S  T  YIGTI+S+T+PA
Sbjct: 122 SFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPA 181

Query: 186 LYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDK 222
           LYSKY   VD+CCG I ++   HY+++DE+V SRL  SLSKDK
Sbjct: 182 LYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDK 224

[Close]

BLAST of Cp4.1LG13g07580 vs. ExPASy Swiss-Prot
Match: Q9SUT9 (Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-28
Identity = 79/230 (34.35%), Postives = 118/230 (51.30%), Query Frame = 0


Query: 6   DSAGNVDADGKDTACTSCDRPASL--------------HQSMGGGKAADILLWKQRHVSF 65
           DS+ +  +D ++   +S   P SL              H+ +GGGK ADI +WK + +S 
Sbjct: 39  DSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSG 98

Query: 66  GIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEE 125
           G+   ATV W+L E     LLT    V++V + +LFL +N   F  K    +P++ + EE
Sbjct: 99  GVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEE 158

Query: 126 FVDNVAASFRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTI 185
            +  +A+  R +IN  +    +I  G D K F   +  LW+LS+LG   SF T AYI  +
Sbjct: 159 PLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALV 218

Query: 186 ISITVPALYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDK 222
           +  TVP  Y KY+  VD        + +K Y V+D  VFS++P    KDK
Sbjct: 219 LLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDK 268

[Close]

BLAST of Cp4.1LG13g07580 vs. ExPASy Swiss-Prot
Match: Q6DBN4 (Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-28
Identity = 67/197 (34.01%), Postives = 109/197 (55.33%), Query Frame = 0


Query: 25  RPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVV 84
           R   +H+ +GGG  AD+ LW+ + +S  ++ VAT  W+L E      L+    +L+  + 
Sbjct: 55  REKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALA 114

Query: 85  LLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFF 144
            LFL +N  AF  K    +P++ + EE    + ++ R ++N A ++   I LG D K F 
Sbjct: 115 ALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFL 174

Query: 145 RMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALYSKYDKHVDRCCGMIRQQFRKHYRV 204
            +V  LW++SV+G++ +F T  YI  ++  TVP LY K++  VD       ++ +KHY V
Sbjct: 175 MVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMV 234

Query: 205 MDESVFSRLPGSLSKDK 222
            DE V S+LP +  K K
Sbjct: 235 FDEKVLSKLPVASLKAK 251

[Close]

BLAST of Cp4.1LG13g07580 vs. ExPASy Swiss-Prot
Match: Q9SUR3 (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.1e-27
Identity = 69/197 (35.03%), Postives = 107/197 (54.31%), Query Frame = 0


Query: 25  RPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVV 84
           R   +H+ +GGGK ADI +WK + +S G++  AT  W++ E     LLT    V++V++ 
Sbjct: 76  REQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLA 135

Query: 85  LLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFF 144
           +LFL +N   F  K    +P++ + EE +  +A+  R +IN       +I  G D K F 
Sbjct: 136 VLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFL 195

Query: 145 RMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALYSKYDKHVDRCCGMIRQQFRKHYRV 204
             +  LW+LS+LG   +F T AYI  ++  TVP  Y KY+  VD        + +K Y V
Sbjct: 196 IAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAV 255

Query: 205 MDESVFSRLPGSLSKDK 222
           +DE V S++P    K+K
Sbjct: 256 LDEKVLSKIPLGPLKNK 272

[Close]

BLAST of Cp4.1LG13g07580 vs. ExPASy Swiss-Prot
Match: O82352 (Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.2e-26
Identity = 68/197 (34.52%), Postives = 110/197 (55.84%), Query Frame = 0


Query: 25  RPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVV 84
           R   +H+ +GGGK AD+ LW+ + +S  ++ VAT  W+L E     LL+    + ++ + 
Sbjct: 55  REKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALG 114

Query: 85  LLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFF 144
            LFL +N      K    +P++ + EE    VA+S R ++N A ++   I LG D K F 
Sbjct: 115 GLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFL 174

Query: 145 RMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALYSKYDKHVDRCCGMIRQQFRKHYRV 204
            +V+ LW++SV+G++ +F T  YI  +I  TVP LY K++  VD       ++ +K Y V
Sbjct: 175 MVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVV 234

Query: 205 MDESVFSRLPGSLSKDK 222
            DE V S++P +  K K
Sbjct: 235 FDEKVLSKIPIASLKAK 251

[Close]

BLAST of Cp4.1LG13g07580 vs. NCBI nr
Match: XP_023549733.1 (reticulon-like protein B16 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439 bits (1129), Expect = 3.00e-155
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MVDNCDSAGNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF 60
           MVDNCDSAGNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF
Sbjct: 1   MVDNCDSAGNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF 60

Query: 61  WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF 120
           WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF
Sbjct: 61  WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF 120

Query: 121 RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY 180
           RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY
Sbjct: 121 RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY 180

Query: 181 SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223
           SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ
Sbjct: 181 SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223

[Close]

BLAST of Cp4.1LG13g07580 vs. NCBI nr
Match: XP_022938460.1 (reticulon-like protein B16 [Cucurbita moschata] >KAG6578480.1 Reticulon-like protein B16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016043.1 Reticulon-like protein B16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434 bits (1117), Expect = 2.03e-153
Identity = 220/223 (98.65%), Postives = 221/223 (99.10%), Query Frame = 0


Query: 1   MVDNCDSAGNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF 60
           MVDNCDSAGNVDADGKD ACTSCDRP SLHQSMGGGKAADILLWKQRHVSFGIVVVATVF
Sbjct: 1   MVDNCDSAGNVDADGKDIACTSCDRPPSLHQSMGGGKAADILLWKQRHVSFGIVVVATVF 60

Query: 61  WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF 120
           WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF
Sbjct: 61  WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF 120

Query: 121 RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY 180
           RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISIT+PALY
Sbjct: 121 RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITIPALY 180

Query: 181 SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223
           SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ
Sbjct: 181 SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223

[Close]

BLAST of Cp4.1LG13g07580 vs. NCBI nr
Match: XP_022993764.1 (reticulon-like protein B16 [Cucurbita maxima])

HSP 1 Score: 433 bits (1114), Expect = 5.82e-153
Identity = 220/223 (98.65%), Postives = 220/223 (98.65%), Query Frame = 0


Query: 1   MVDNCDSAGNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF 60
           MVDNCDSAGNVD DGKD ACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF
Sbjct: 1   MVDNCDSAGNVDGDGKDIACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF 60

Query: 61  WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF 120
           WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF
Sbjct: 61  WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF 120

Query: 121 RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY 180
           RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY
Sbjct: 121 RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY 180

Query: 181 SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223
           SKYDKHVDRCCGMIRQQFRKHYRVMDE VFSRLPGSLSKDKHQ
Sbjct: 181 SKYDKHVDRCCGMIRQQFRKHYRVMDERVFSRLPGSLSKDKHQ 223

[Close]

BLAST of Cp4.1LG13g07580 vs. NCBI nr
Match: XP_008456773.1 (PREDICTED: reticulon-like protein B16 [Cucumis melo] >KAA0052008.1 reticulon-like protein B16 [Cucumis melo var. makuwa] >TYK04551.1 reticulon-like protein B16 [Cucumis melo var. makuwa])

HSP 1 Score: 383 bits (983), Expect = 5.60e-133
Identity = 197/224 (87.95%), Postives = 210/224 (93.75%), Query Frame = 0


Query: 1   MVDNCDSA-GNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATV 60
           MVD  D+A GNV+ADGKD  CTSCDR   LHQSMGGGKAADILLWKQ HVSFGI+VV+TV
Sbjct: 1   MVDLSDTAAGNVEADGKDIPCTSCDRQTLLHQSMGGGKAADILLWKQWHVSFGIIVVSTV 60

Query: 61  FWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAAS 120
           FWLLIEHSGLPLLTTCSDVLL+LVVLLFLRAN+AAFR KQLQTLPQLVLSEEFV+NVAAS
Sbjct: 61  FWLLIEHSGLPLLTTCSDVLLILVVLLFLRANYAAFRNKQLQTLPQLVLSEEFVNNVAAS 120

Query: 121 FRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPAL 180
            RAKINN LL+AHDITLGNDFKLFFRMVI LWLLSV+GSY+SFFTFAYIGTIISIT+PAL
Sbjct: 121 LRAKINNTLLMAHDITLGNDFKLFFRMVIGLWLLSVVGSYVSFFTFAYIGTIISITIPAL 180

Query: 181 YSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223
           YSKYDKHVDR CGMIRQQFRKHYRVMDESVFSRLPG+LSKDK+Q
Sbjct: 181 YSKYDKHVDRYCGMIRQQFRKHYRVMDESVFSRLPGNLSKDKNQ 224

[Close]

BLAST of Cp4.1LG13g07580 vs. NCBI nr
Match: XP_038885563.1 (reticulon-like protein B16 [Benincasa hispida])

HSP 1 Score: 380 bits (976), Expect = 6.53e-132
Identity = 196/224 (87.50%), Postives = 208/224 (92.86%), Query Frame = 0


Query: 1   MVDNCDS-AGNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATV 60
           MVD  D+ AGNV+ DGKD  CTSCDR   LHQSMGGGKAADILLWKQRHVSFGIVVVATV
Sbjct: 1   MVDISDTTAGNVEGDGKDAPCTSCDRQTLLHQSMGGGKAADILLWKQRHVSFGIVVVATV 60

Query: 61  FWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAAS 120
           FWLLIE+SGLPLLTTCSDVLL+LVVLLFLRAN+AAFR KQLQTLPQL LSEEFV+NVAAS
Sbjct: 61  FWLLIEYSGLPLLTTCSDVLLILVVLLFLRANYAAFRNKQLQTLPQLALSEEFVNNVAAS 120

Query: 121 FRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPAL 180
            RAKINN LL+AH+ITLGNDFKLFFRMVI LWLLSV+GSY+SFFTFAYIGTIISIT+PAL
Sbjct: 121 LRAKINNTLLMAHEITLGNDFKLFFRMVIGLWLLSVMGSYVSFFTFAYIGTIISITIPAL 180

Query: 181 YSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223
           YSKYD+HVDR CGMIRQQFRKHYRVMDESVFSRLPGSLSKDK Q
Sbjct: 181 YSKYDEHVDRYCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKDQ 224

[Close]

BLAST of Cp4.1LG13g07580 vs. ExPASy TrEMBL
Match: A0A6J1FJV2 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111444692 PE=4 SV=1)

HSP 1 Score: 434 bits (1117), Expect = 9.82e-154
Identity = 220/223 (98.65%), Postives = 221/223 (99.10%), Query Frame = 0


Query: 1   MVDNCDSAGNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF 60
           MVDNCDSAGNVDADGKD ACTSCDRP SLHQSMGGGKAADILLWKQRHVSFGIVVVATVF
Sbjct: 1   MVDNCDSAGNVDADGKDIACTSCDRPPSLHQSMGGGKAADILLWKQRHVSFGIVVVATVF 60

Query: 61  WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF 120
           WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF
Sbjct: 61  WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF 120

Query: 121 RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY 180
           RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISIT+PALY
Sbjct: 121 RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITIPALY 180

Query: 181 SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223
           SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ
Sbjct: 181 SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223

[Close]

BLAST of Cp4.1LG13g07580 vs. ExPASy TrEMBL
Match: A0A6J1K105 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111489673 PE=4 SV=1)

HSP 1 Score: 433 bits (1114), Expect = 2.82e-153
Identity = 220/223 (98.65%), Postives = 220/223 (98.65%), Query Frame = 0


Query: 1   MVDNCDSAGNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF 60
           MVDNCDSAGNVD DGKD ACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF
Sbjct: 1   MVDNCDSAGNVDGDGKDIACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATVF 60

Query: 61  WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF 120
           WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF
Sbjct: 61  WLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAASF 120

Query: 121 RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY 180
           RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY
Sbjct: 121 RAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPALY 180

Query: 181 SKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223
           SKYDKHVDRCCGMIRQQFRKHYRVMDE VFSRLPGSLSKDKHQ
Sbjct: 181 SKYDKHVDRCCGMIRQQFRKHYRVMDERVFSRLPGSLSKDKHQ 223

[Close]

BLAST of Cp4.1LG13g07580 vs. ExPASy TrEMBL
Match: A0A5A7U9N4 (Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001790 PE=4 SV=1)

HSP 1 Score: 383 bits (983), Expect = 2.71e-133
Identity = 197/224 (87.95%), Postives = 210/224 (93.75%), Query Frame = 0


Query: 1   MVDNCDSA-GNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATV 60
           MVD  D+A GNV+ADGKD  CTSCDR   LHQSMGGGKAADILLWKQ HVSFGI+VV+TV
Sbjct: 1   MVDLSDTAAGNVEADGKDIPCTSCDRQTLLHQSMGGGKAADILLWKQWHVSFGIIVVSTV 60

Query: 61  FWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAAS 120
           FWLLIEHSGLPLLTTCSDVLL+LVVLLFLRAN+AAFR KQLQTLPQLVLSEEFV+NVAAS
Sbjct: 61  FWLLIEHSGLPLLTTCSDVLLILVVLLFLRANYAAFRNKQLQTLPQLVLSEEFVNNVAAS 120

Query: 121 FRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPAL 180
            RAKINN LL+AHDITLGNDFKLFFRMVI LWLLSV+GSY+SFFTFAYIGTIISIT+PAL
Sbjct: 121 LRAKINNTLLMAHDITLGNDFKLFFRMVIGLWLLSVVGSYVSFFTFAYIGTIISITIPAL 180

Query: 181 YSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223
           YSKYDKHVDR CGMIRQQFRKHYRVMDESVFSRLPG+LSKDK+Q
Sbjct: 181 YSKYDKHVDRYCGMIRQQFRKHYRVMDESVFSRLPGNLSKDKNQ 224

[Close]

BLAST of Cp4.1LG13g07580 vs. ExPASy TrEMBL
Match: A0A1S3C5B5 (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496616 PE=4 SV=1)

HSP 1 Score: 383 bits (983), Expect = 2.71e-133
Identity = 197/224 (87.95%), Postives = 210/224 (93.75%), Query Frame = 0


Query: 1   MVDNCDSA-GNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATV 60
           MVD  D+A GNV+ADGKD  CTSCDR   LHQSMGGGKAADILLWKQ HVSFGI+VV+TV
Sbjct: 1   MVDLSDTAAGNVEADGKDIPCTSCDRQTLLHQSMGGGKAADILLWKQWHVSFGIIVVSTV 60

Query: 61  FWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAAS 120
           FWLLIEHSGLPLLTTCSDVLL+LVVLLFLRAN+AAFR KQLQTLPQLVLSEEFV+NVAAS
Sbjct: 61  FWLLIEHSGLPLLTTCSDVLLILVVLLFLRANYAAFRNKQLQTLPQLVLSEEFVNNVAAS 120

Query: 121 FRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPAL 180
            RAKINN LL+AHDITLGNDFKLFFRMVI LWLLSV+GSY+SFFTFAYIGTIISIT+PAL
Sbjct: 121 LRAKINNTLLMAHDITLGNDFKLFFRMVIGLWLLSVVGSYVSFFTFAYIGTIISITIPAL 180

Query: 181 YSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223
           YSKYDKHVDR CGMIRQQFRKHYRVMDESVFSRLPG+LSKDK+Q
Sbjct: 181 YSKYDKHVDRYCGMIRQQFRKHYRVMDESVFSRLPGNLSKDKNQ 224

[Close]

BLAST of Cp4.1LG13g07580 vs. ExPASy TrEMBL
Match: A0A0A0KBS2 (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G014530 PE=4 SV=1)

HSP 1 Score: 373 bits (957), Expect = 2.48e-129
Identity = 191/224 (85.27%), Postives = 206/224 (91.96%), Query Frame = 0


Query: 1   MVDNCDSA-GNVDADGKDTACTSCDRPASLHQSMGGGKAADILLWKQRHVSFGIVVVATV 60
           MVD  ++A G+ +ADGKD  CTSCDR   LHQSMGGGKAADILLWKQ HVS G++VV+TV
Sbjct: 1   MVDLSETAAGSAEADGKDIPCTSCDRQTLLHQSMGGGKAADILLWKQWHVSIGVLVVSTV 60

Query: 61  FWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAAS 120
           FWLLIEHSGLPLLTTCSDVLL+LVVLLFLRANFAAFR KQLQTLPQLVLSEEFV+NVAAS
Sbjct: 61  FWLLIEHSGLPLLTTCSDVLLILVVLLFLRANFAAFRNKQLQTLPQLVLSEEFVNNVAAS 120

Query: 121 FRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPAL 180
            RAKINN LL+AHDIT+GNDFKLFFRMVI LWLLSV+GSY+SFFTFAY+GTIISIT+PAL
Sbjct: 121 LRAKINNTLLMAHDITVGNDFKLFFRMVIGLWLLSVVGSYVSFFTFAYVGTIISITIPAL 180

Query: 181 YSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDKHQ 223
           YSKYDKHVDR CGMIRQQFRKHYRVMDESVFSRLPG LSKDK Q
Sbjct: 181 YSKYDKHVDRYCGMIRQQFRKHYRVMDESVFSRLPGGLSKDKDQ 224

[Close]

BLAST of Cp4.1LG13g07580 vs. TAIR 10
Match: AT3G10915.2 (Reticulon family protein )

HSP 1 Score: 253.1 bits (645), Expect = 2.1e-67
Identity = 122/223 (54.71%), Postives = 173/223 (77.58%), Query Frame = 0


Query: 6   DSAGNVDA--DGKDTACTSCD-----RPASLHQSMGGGKAADILLWKQRHVSFGIVVVAT 65
           DS  ++D   DG++   +S D     R  ++HQ MGGGKAAD+LLW++RH+S G+++++T
Sbjct: 2   DSLSDIDGDFDGRNEGGSSSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIIST 61

Query: 66  VFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAA 125
           V WL+ E SGLP L+  SDVLL+++++ F+ A  +AFR +QL +LP+LVLSEE V++ AA
Sbjct: 62  VAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAA 121

Query: 126 SFRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLGSYLSFFTFAYIGTIISITVPA 185
           SFR K+N+ L++AHD+T+GNDF+LFF++VICLWLLS +GSY+S  T  YIGTI+S+T+PA
Sbjct: 122 SFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPA 181

Query: 186 LYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDK 222
           LYSKY   VD+CCG I ++   HY+++DE+V SRL  SLSKDK
Sbjct: 182 LYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDK 224

[Close]

BLAST of Cp4.1LG13g07580 vs. TAIR 10
Match: AT3G10915.4 (Reticulon family protein )

HSP 1 Score: 248.4 bits (633), Expect = 5.3e-66
Identity = 122/224 (54.46%), Postives = 173/224 (77.23%), Query Frame = 0


Query: 6   DSAGNVDA--DGKDTACTSCD-----RPASLHQSMGGGKAADILLWKQRHVSFGIVVVAT 65
           DS  ++D   DG++   +S D     R  ++HQ MGGGKAAD+LLW++RH+S G+++++T
Sbjct: 2   DSLSDIDGDFDGRNEGGSSSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIIST 61

Query: 66  VFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRKKQLQTLPQLVLSEEFVDNVAA 125
           V WL+ E SGLP L+  SDVLL+++++ F+ A  +AFR +QL +LP+LVLSEE V++ AA
Sbjct: 62  VAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAA 121

Query: 126 SFRAKINNALLVAHDITLGNDFKLFFR-MVICLWLLSVLGSYLSFFTFAYIGTIISITVP 185
           SFR K+N+ L++AHD+T+GNDF+LFF+ +VICLWLLS +GSY+S  T  YIGTI+S+T+P
Sbjct: 122 SFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIGSYISLCTLLYIGTILSVTIP 181

Query: 186 ALYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSLSKDK 222
           ALYSKY   VD+CCG I ++   HY+++DE+V SRL  SLSKDK
Sbjct: 182 ALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDK 225

[Close]

BLAST of Cp4.1LG13g07580 vs. TAIR 10
Match: AT3G10915.5 (Reticulon family protein )

HSP 1 Score: 235.7 bits (600), Expect = 3.5e-62
Identity = 122/246 (49.59%), Postives = 173/246 (70.33%), Query Frame = 0


Query: 6   DSAGNVDA--DGKDTACTSCD-----RPASLHQSMGGGK--------------------- 65
           DS  ++D   DG++   +S D     R  ++HQ MGGGK                     
Sbjct: 2   DSLSDIDGDFDGRNEGGSSSDYRLLGRQITVHQFMGGGKGEFFFPEFHFGYSRKWKTWQF 61

Query: 66  -AADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFR 125
            AAD+LLW++RH+S G+++++TV WL+ E SGLP L+  SDVLL+++++ F+ A  +AFR
Sbjct: 62  IAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFR 121

Query: 126 KKQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFFR-MVICLWLLSV 185
            +QL +LP+LVLSEE V++ AASFR K+N+ L++AHD+T+GNDF+LFF+ +VICLWLLS 
Sbjct: 122 NRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSA 181

Query: 186 LGSYLSFFTFAYIGTIISITVPALYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPG 222
           +GSY+S  T  YIGTI+S+T+PALYSKY   VD+CCG I ++   HY+++DE+V SRL  
Sbjct: 182 IGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSW 241

[Close]

BLAST of Cp4.1LG13g07580 vs. TAIR 10
Match: AT3G10915.3 (Reticulon family protein )

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-61
Identity = 107/184 (58.15%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 38  AADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRK 97
           AAD+LLW++RH+S G+++++TV WL+ E SGLP L+  SDVLL+++++ F+ A  +AFR 
Sbjct: 8   AADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRN 67

Query: 98  KQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLG 157
           +QL +LP+LVLSEE V++ AASFR K+N+ L++AHD+T+GNDF+LFF++VICLWLLS +G
Sbjct: 68  RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIG 127

Query: 158 SYLSFFTFAYIGTIISITVPALYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSL 217
           SY+S  T  YIGTI+S+T+PALYSKY   VD+CCG I ++   HY+++DE+V SRL  SL
Sbjct: 128 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 187

Query: 218 SKDK 222
           SKDK
Sbjct: 188 SKDK 191

[Close]

BLAST of Cp4.1LG13g07580 vs. TAIR 10
Match: AT3G10915.6 (Reticulon family protein )

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-61
Identity = 107/184 (58.15%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 38  AADILLWKQRHVSFGIVVVATVFWLLIEHSGLPLLTTCSDVLLVLVVLLFLRANFAAFRK 97
           AAD+LLW++RH+S G+++++TV WL+ E SGLP L+  SDVLL+++++ F+ A  +AFR 
Sbjct: 9   AADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRN 68

Query: 98  KQLQTLPQLVLSEEFVDNVAASFRAKINNALLVAHDITLGNDFKLFFRMVICLWLLSVLG 157
           +QL +LP+LVLSEE V++ AASFR K+N+ L++AHD+T+GNDF+LFF++VICLWLLS +G
Sbjct: 69  RQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIG 128

Query: 158 SYLSFFTFAYIGTIISITVPALYSKYDKHVDRCCGMIRQQFRKHYRVMDESVFSRLPGSL 217
           SY+S  T  YIGTI+S+T+PALYSKY   VD+CCG I ++   HY+++DE+V SRL  SL
Sbjct: 129 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 188

Query: 218 SKDK 222
           SKDK
Sbjct: 189 SKDK 192

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g07580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYH6	3.0e-66	54.71	Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1	[more]
Q9SUT9	3.3e-28	34.35	Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1	[more]
Q6DBN4	5.5e-28	34.01	Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1	[more]
Q9SUR3	6.1e-27	35.03	Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1	[more]
O82352	5.2e-26	34.52	Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1	[more]

BLAST of Cp4.1LG13g07580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549733.1	3.00e-155	100.00	reticulon-like protein B16 [Cucurbita pepo subsp. pepo]	[more]
XP_022938460.1	2.03e-153	98.65	reticulon-like protein B16 [Cucurbita moschata] >KAG6578480.1 Reticulon-like pro...	[more]
XP_022993764.1	5.82e-153	98.65	reticulon-like protein B16 [Cucurbita maxima]	[more]
XP_008456773.1	5.60e-133	87.95	PREDICTED: reticulon-like protein B16 [Cucumis melo] >KAA0052008.1 reticulon-lik...	[more]
XP_038885563.1	6.53e-132	87.50	reticulon-like protein B16 [Benincasa hispida]	[more]

BLAST of Cp4.1LG13g07580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJV2	9.82e-154	98.65	Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111444692 PE=4 SV=1	[more]
A0A6J1K105	2.82e-153	98.65	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111489673 PE=4 SV=1	[more]
A0A5A7U9N4	2.71e-133	87.95	Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A1S3C5B5	2.71e-133	87.95	Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103496616 PE=4 SV=1	[more]
A0A0A0KBS2	2.48e-129	85.27	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G014530 PE=4 SV=1	[more]

BLAST of Cp4.1LG13g07580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10915.2	2.1e-67	54.71	Reticulon family protein	[more]
AT3G10915.4	5.3e-66	54.46	Reticulon family protein	[more]
AT3G10915.5	3.5e-62	49.59	Reticulon family protein	[more]
AT3G10915.3	1.0e-61	58.15	Reticulon family protein	[more]
AT3G10915.6	1.0e-61	58.15	Reticulon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 39..192 e-value: 4.3E-43 score: 147.0
IPR003388	Reticulon	PROSITE	PS50845	RETICULON	coord: 38..223 score: 28.795649
None	No IPR available	PANTHER	PTHR10994:SF67	RETICULON-LIKE PROTEIN B16	coord: 18..222
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 18..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g07580.1	Cp4.1LG13g07580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane