Cp4.1LG13g06980 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g06980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG13: 4205872 .. 4206189 (+)
RNA-Seq ExpressionCp4.1LG13g06980
SyntenyCp4.1LG13g06980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCCGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGAGTGAGGGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGATGGTGGGGGAGAGGGGAAATATCGGGGAGGCAGTGGTCGGAAAAAGGAGGGGCGGGGGAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGCTGAGTTGGCTCTGTAA

mRNA sequence

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCCGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGAGTGAGGGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGATGGTGGGGGAGAGGGGAAATATCGGGGAGGCAGTGGTCGGAAAAAGGAGGGGCGGGGGAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGCTGAGTTGGCTCTGTAA

Coding sequence (CDS)

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCCGCAGGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAGAGGGGAGAGACAGACGACGCAGTCGGAGGCGGAATCGTGGGAGTGAGGGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGATGGTGGGGGAGAGGGGAAATATCGGGGAGGCAGTGGTCGGAAAAAGGAGGGGCGGGGGAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGCTGAGTTGGCTCTGTAA

Protein sequence

MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGGGIVGVRVAVREEAIEVKMVGERGNIGEAVVGKRRGGGEKGAEKGEEIGEEREEEERERLGGEVAELAL
Homology
BLAST of Cp4.1LG13g06980 vs. NCBI nr
Match: KAG6579228.1 (hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (441), Expect = 3.44e-54
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGGGIVGVRVAVREEAIEVKMVGERG 60
           MMEAGVEAVLVEDVAA KAADEVAGGERGETDDAVGGGIVGVRVAVREEAIEVK+VGERG
Sbjct: 1   MMEAGVEAVLVEDVAARKAADEVAGGERGETDDAVGGGIVGVRVAVREEAIEVKVVGERG 60

Query: 61  NIGEAVVGKRRGGGEKGAEKGEEIGEEREEEERERLGGEVAELAL 105
           NIGEAVVG+RR GGEKGAEKGEEIGEEREEEERERLGGEV ELAL
Sbjct: 61  NIGEAVVGRRRSGGEKGAEKGEEIGEEREEEERERLGGEVVELAL 105

BLAST of Cp4.1LG13g06980 vs. NCBI nr
Match: KGN51526.1 (hypothetical protein Csa_008164 [Cucumis sativus])

HSP 1 Score: 103 bits (256), Expect = 1.14e-25
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 0

Query: 1   MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGGGI--VGVRVAVREEAIEVKMVGE 60
           M++  VEAV +E+VAAG+ ADEV G ERGETDDA+GGG+  VGV V V E+AIE++MVG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIGEAVVGKRRGGGEKGAEKGEEIGEEREEEERERLGGEVAELAL 105
           RG I   VVG   GG E GAE+ EEIG+EREEEERER+ GEV EL +
Sbjct: 91  RGEI-RTVVG---GGEEGGAEEREEIGKEREEEERERMVGEVIELCV 133

BLAST of Cp4.1LG13g06980 vs. NCBI nr
Match: KAG6601827.1 (hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 3.59e-21
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = 0

Query: 1  MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGGGIVGVRVAVREEAIEVKMVGERG 60
          MM+  +EAVLVEDV A + AD V  GE  E DD VGGG +GV VAV E+AIE+KM+ ERG
Sbjct: 1  MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGGGIGV-VAVGEKAIEMKMLVERG 60

Query: 61 NIGEAVVGKRRGGGE-KGAEKGEEIGEEREEEERE 94
          NIG   +G+R GGGE + AE+GEEIGEEREEEERE
Sbjct: 61 NIG---IGRRSGGGEERTAEEGEEIGEEREEEERE 91

BLAST of Cp4.1LG13g06980 vs. ExPASy TrEMBL
Match: A0A0A0KUZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 5.51e-26
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 0

Query: 1   MMEAGVEAVLVEDVAAGKAADEVAGGERGETDDAVGGGI--VGVRVAVREEAIEVKMVGE 60
           M++  VEAV +E+VAAG+ ADEV G ERGETDDA+GGG+  VGV V V E+AIE++MVG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIGEAVVGKRRGGGEKGAEKGEEIGEEREEEERERLGGEVAELAL 105
           RG I   VVG   GG E GAE+ EEIG+EREEEERER+ GEV EL +
Sbjct: 91  RGEI-RTVVG---GGEEGGAEEREEIGKEREEEERERMVGEVIELCV 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6579228.13.44e-5495.24hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN51526.11.14e-2563.55hypothetical protein Csa_008164 [Cucumis sativus][more]
KAG6601827.13.59e-2165.26hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KUZ65.51e-2663.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g06980.1Cp4.1LG13g06980.1mRNA