Cp4.1LG13g06340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g06340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG13: 4812656 .. 4813643 (-)
RNA-Seq ExpressionCp4.1LG13g06340
SyntenyCp4.1LG13g06340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTGTTTCTTTCTATTGCTAGGCTTAGTTTGTTGCAGCATCATGAAGGTGGTGAAAAGCTACTTGACTTATCACTTAAGAAGGTAATCACTTAACACTTCTCAAATAAATTTGTCTAGTGAACTGATTACTAGTACAACAGTGATTTTTGGCACATCCATACATTTAAGTTGAACTGAAGCAACTACTTAGATGTATCCCATTAGCATAGTAAAACTTGAGTTGATGATGACTTGCAAAAGCTTCAGAGTTTGGTTCCAGTGTCATGTCTGTTCGTTATCCATCGTCAGGATCCGTAGTGTAGGGAACAAAACTGGGTACGGGGCCTAAAAGCAGAGCTTAGGTACATTGAGAAGTTTACACCGTTGTCCTGATCATTTGAATATTGGTTCGATTTATTATGGCATGTATATTTTGTTTTACCATTGAAGCCACCGGATGAATGATTTCATAAGACACGTTTCTTTGAATTTCTCAGGTGGTTGGTCTGGGAGAGAGCTGGCTCCCAATATGTGAATGCAAGTCTCAAATCTCACGAGTACTGGAAGGAGGAAGCTGCACGATGAAGTGTTGTAGCCTTGCAGAATGAAGCCCAGGAAGGTTAAGTGATATGATTTACTGTTTCTCTGTTAAAAAATCTGCACATGAATTTAAGAACTAAAGCATGGAGAAGAGAAGAGAAGAGAAGTATAGAGAACAGTGTAATAGTATTTCTCAAAACACTAAACAAGAAACAGGAAAGATGAATATACCATTATTAGAGACCATAGGATCTTTTTTTACTTCGCAGGTCCTTGTGATAAACTTGAATGATGCTTCTACTGAACCAAAAAGTTGCAACATTAGATATTTTTAGGTTGAGCTTACTAAAACAGTCTGTTAAGATCCAGTTCTTCAATGTGCCATTCAGTGCTACTCAACCTTAAAAATAAATTTAGTTGTTCAAGTTAGGCATTTTAGAGGAAATGTGTACAAATCTTGTGA

mRNA sequence

ATGTGGTTGTTTCTTTCTATTGCTAGGCTTAGTTTGTTGCAGCATCATGAAGGTGGTGAAAAGCTACTTGACTTATCACTTAAGAAGTGTAGGGAACAAAACTGGGTACGGGGCCTAAAAGCAGAGCTTAGGTGGTTGGTCTGGGAGAGAGCTGGCTCCCAATATGTGAATGCAAGTCTCAAATCTCACGAGTACTGGAAGGAGGAAGCTGCACGATGAAGTGTTGTAGCCTTGCAGAATGAAGCCCAGGAAGGTTAAGTGATATGATTTACTGTTTCTCTGTTAAAAAATCTGCACATGAATTTAAGAACTAAAGCATGGAGAAGAGAAGAGAAGAGAAGTATAGAGAACAGTGTAATAGTATTTCTCAAAACACTAAACAAGAAACAGGAAAGATGAATATACCATTATTAGAGACCATAGGATCTTTTTTTACTTCGCAGGTCCTTGTGATAAACTTGAATGATGCTTCTACTGAACCAAAAAGTTGCAACATTAGATATTTTTAGGTTGAGCTTACTAAAACAGTCTGTTAAGATCCAGTTCTTCAATGTGCCATTCAGTGCTACTCAACCTTAAAAATAAATTTAGTTGTTCAAGTTAGGCATTTTAGAGGAAATGTGTACAAATCTTGTGA

Coding sequence (CDS)

ATGTGGTTGTTTCTTTCTATTGCTAGGCTTAGTTTGTTGCAGCATCATGAAGGTGGTGAAAAGCTACTTGACTTATCACTTAAGAAGTGTAGGGAACAAAACTGGGTACGGGGCCTAAAAGCAGAGCTTAGGTGGTTGGTCTGGGAGAGAGCTGGCTCCCAATATGTGAATGCAAGTCTCAAATCTCACGAGTACTGGAAGGAGGAAGCTGCACGATGA

Protein sequence

MWLFLSIARLSLLQHHEGGEKLLDLSLKKCREQNWVRGLKAELRWLVWERAGSQYVNASLKSHEYWKEEAAR
Homology
[Close]
BLAST of Cp4.1LG13g06340 vs. NCBI nr
Match: KAG7016678.1 (hypothetical protein SDJN02_21788, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.5 bits (158), Expect = 3.51e-12
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 44 RWLVWERAGSQYVNASLKSHEYWKEEAAR 72
          RWLVWERAGSQYVNASLKSHEYWKEEAAR
Sbjct: 32 RWLVWERAGSQYVNASLKSHEYWKEEAAR 60

[Close]
BLAST of Cp4.1LG13g06340 vs. NCBI nr
Match: KAG6579159.1 (hypothetical protein SDJN03_23607, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 5.92e-12
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 44 RWLVWERAGSQYVNASLKSHEYWKEEAAR 72
          RWLVWERAGSQYVNASLKSHEYWKEEAAR
Sbjct: 53 RWLVWERAGSQYVNASLKSHEYWKEEAAR 81

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g06340 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g06340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016678.13.51e-12100.00hypothetical protein SDJN02_21788, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6579159.15.92e-12100.00hypothetical protein SDJN03_23607, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG13g06340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g06340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g06340.1Cp4.1LG13g06340.1mRNA