Cp4.1LG13g04750 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g04750
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	photosystem II 22 kDa protein, chloroplastic-like
Location	Cp4.1LG13: 5952952 .. 5954513 (-)
RNA-Seq Expression	Cp4.1LG13g04750
Synteny	Cp4.1LG13g04750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCATCACAAAAAACTAAACGACGACGTGTCACTTTATGCGCCGATCGTCAAACTCTCCCCACCAAATCCACAAGCACATCCCATTTCACCATACACTCAAATTCCCTCTGATTTCTCGAAACCTTTCTTCTTAAAAGCCTATCCAAATTACTCACCCATTTGCTTAAGCTTTTAAATCACAGGCTTCCCTGCATTAATCTCACTCAAATACCTTATAGCATTTTCATTTCGGTTCATTTCGGTTCATTTCCATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGCGTGCGCCGGCCATAAGAAAGAATTCGCTTCTATTTTCACTCGAACGCTTAGACCTAACACCCAATTTACTCACCTTCTTTTCAATCCTTCGCCTTCACATTCCGTTTCCTTGCCGGCGCGTGGGTTTACGACTCTTGCGGTTTTTAAATCCAGAACTAAAGTGCCGCCGAAGAAGGTAATTTTGATTTTGATGTTTTTTTTAGAGAGAGGAATTGATGGAATCTGAGTGTTTGTTTGGTTCTTGATTTGATTTTAGGTTGCGAAGCCGAAGGTTGAAGACGGCATTTTCGGGACTTCCGGTGGCATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGTGAGTTCCTTCGAATTTATGGATCTACGTTTATCAAATACCTAAGTAAGGCAACATTACTATAAATCTAATTGGATTTTGATATGTATGATGGTGTAAAATTTGCAGGCATCTTTGTTAGGAGAGGGGATTACCGGGAAGGGAATTCTGGCGCAACTGAACTTGGAAACTGGAGTTCCGATTTACGAGGCGGAGCCTCTTCTTCTATTCTTCATCTTGTTCACTCTCCTCGGAGCCATTGGAGCCCTAGGAGACCGTGGAAAATTTATCGACGATCCAGAAACGGCTGGCTTGGAACGTGCCGTCATCCCTCCCGGGAAGGGCTTCAGATCGGCGCTAGGTCTCAAGGAAGGAGGTAAATTACAGTACAGTACAACGGCATTGTTCAGTTAAATCAAATCTTACATGAAATTGACGATGACTCTGTTTTATTGAAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGGCGATTGGCGCAGCTAGGGTTTGCATTCTCGCTAATCGGAGAAATTATTACAGGAAAAGGTGCGTTGGCGCAGTTAAACATCGAGACGGGAGTGCCGATAAATGAGATCGAGCCTCTGGTATTGTTGAACGTCGTGTTCTTCTTCATTGCAGCTCTGAATCCTGGAACTGGAAAATTCGTCACCGACGAGGAAGATGATGATTGAACGGATCGATTCTGCTTTAATTTTCTTTGTACATGAACTTAGCAAATCCGCGAATTTCTCTCTAGGCTTGTGTTATTATAACATGTGTATTCTGCTTGATCACCTAAAACAACGAAATCCAAGCAACCGACTTTGACTGGTAAATTGTTAAAAATTATTATAAATATAAAACTTTATGGGAAATAATTATGCGACTTTTTAATATTATACCAAAGAGATAAATG

mRNA sequence

CCACCATCACAAAAAACTAAACGACGACGTGTCACTTTATGCGCCGATCGTCAAACTCTCCCCACCAAATCCACAAGCACATCCCATTTCACCATACACTCAAATTCCCTCTGATTTCTCGAAACCTTTCTTCTTAAAAGCCTATCCAAATTACTCACCCATTTGCTTAAGCTTTTAAATCACAGGCTTCCCTGCATTAATCTCACTCAAATACCTTATAGCATTTTCATTTCGGTTCATTTCGGTTCATTTCCATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGCGTGCGCCGGCCATAAGAAAGAATTCGCTTCTATTTTCACTCGAACGCTTAGACCTAACACCCAATTTACTCACCTTCTTTTCAATCCTTCGCCTTCACATTCCGTTTCCTTGCCGGCGCGTGGGTTTACGACTCTTGCGGTTTTTAAATCCAGAACTAAAGTGCCGCCGAAGAAGGTTGCGAAGCCGAAGGTTGAAGACGGCATTTTCGGGACTTCCGGTGGCATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCTTTGTTAGGAGAGGGGATTACCGGGAAGGGAATTCTGGCGCAACTGAACTTGGAAACTGGAGTTCCGATTTACGAGGCGGAGCCTCTTCTTCTATTCTTCATCTTGTTCACTCTCCTCGGAGCCATTGGAGCCCTAGGAGACCGTGGAAAATTTATCGACGATCCAGAAACGGCTGGCTTGGAACGTGCCGTCATCCCTCCCGGGAAGGGCTTCAGATCGGCGCTAGGTCTCAAGGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGGCGATTGGCGCAGCTAGGGTTTGCATTCTCGCTAATCGGAGAAATTATTACAGGAAAAGGTGCGTTGGCGCAGTTAAACATCGAGACGGGAGTGCCGATAAATGAGATCGAGCCTCTGGTATTGTTGAACGTCGTGTTCTTCTTCATTGCAGCTCTGAATCCTGGAACTGGAAAATTCGTCACCGACGAGGAAGATGATGATTGAACGGATCGATTCTGCTTTAATTTTCTTTGTACATGAACTTAGCAAATCCGCGAATTTCTCTCTAGGCTTGTGTTATTATAACATGTGTATTCTGCTTGATCACCTAAAACAACGAAATCCAAGCAACCGACTTTGACTGGTAAATTGTTAAAAATTATTATAAATATAAAACTTTATGGGAAATAATTATGCGACTTTTTAATATTATACCAAAGAGATAAATG

Coding sequence (CDS)

ATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGCGTGCGCCGGCCATAAGAAAGAATTCGCTTCTATTTTCACTCGAACGCTTAGACCTAACACCCAATTTACTCACCTTCTTTTCAATCCTTCGCCTTCACATTCCGTTTCCTTGCCGGCGCGTGGGTTTACGACTCTTGCGGTTTTTAAATCCAGAACTAAAGTGCCGCCGAAGAAGGTTGCGAAGCCGAAGGTTGAAGACGGCATTTTCGGGACTTCCGGTGGCATTGGTTTCACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCTTTGTTAGGAGAGGGGATTACCGGGAAGGGAATTCTGGCGCAACTGAACTTGGAAACTGGAGTTCCGATTTACGAGGCGGAGCCTCTTCTTCTATTCTTCATCTTGTTCACTCTCCTCGGAGCCATTGGAGCCCTAGGAGACCGTGGAAAATTTATCGACGATCCAGAAACGGCTGGCTTGGAACGTGCCGTCATCCCTCCCGGGAAGGGCTTCAGATCGGCGCTAGGTCTCAAGGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGGCGATTGGCGCAGCTAGGGTTTGCATTCTCGCTAATCGGAGAAATTATTACAGGAAAAGGTGCGTTGGCGCAGTTAAACATCGAGACGGGAGTGCCGATAAATGAGATCGAGCCTCTGGTATTGTTGAACGTCGTGTTCTTCTTCATTGCAGCTCTGAATCCTGGAACTGGAAAATTCGTCACCGACGAGGAAGATGATGATTGA

Protein sequence

MAAQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTTLAVFKSRTKVPPKKVAKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD

Homology

[Close]

BLAST of Cp4.1LG13g04750 vs. ExPASy Swiss-Prot
Match: Q02060 (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBS PE=1 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.4e-104
Identity = 204/276 (73.91%), Postives = 231/276 (83.70%), Query Frame = 0


Query: 3   AQTMLL------TSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTT 62
           AQ MLL      T+      +     +  + ++P +  ++L F+P PS S S  +  F T
Sbjct: 2   AQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSS-SSSSTVFKT 61

Query: 63  LAVFKSRTKVPPKKVAKP--KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 122
           LA+FKS+ K  PKKV KP  KVEDG+FGTSGGIGFTK+NELFVGRVAMIGFAASLLGEGI
Sbjct: 62  LALFKSKAKA-PKKVEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGI 121

Query: 123 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIP 182
           TGKGIL+QLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRG+F+D+P T GLE+AVIP
Sbjct: 122 TGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP-TTGLEKAVIP 181

Query: 183 PGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 242
           PGK  RSALGLK  GPLFGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV
Sbjct: 182 PGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 241

Query: 243 PINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD 271
           PINEIEPLVLLNVVFFFIAA+NPGTGKF+TD+E++D
Sbjct: 242 PINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEED 274

[Close]

BLAST of Cp4.1LG13g04750 vs. ExPASy Swiss-Prot
Match: Q9XF91 (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBS PE=2 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 7.5e-104
Identity = 208/272 (76.47%), Postives = 224/272 (82.35%), Query Frame = 0


Query: 3   AQTMLLTSGACAGHKKEFASIFTRTLRPNTQ-FTHLLFNPSPSHSVSLPAR--GFTTLAV 62
           AQTMLLTSG  AGH       F R   P  Q   H LF  S +  V+LP+R   F  LA+
Sbjct: 2   AQTMLLTSGVTAGH-------FLRNKSPLAQPKVHHLF-LSGNSPVALPSRRQSFVPLAL 61

Query: 63  FKSRTKVPPKKVAKP--KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGK 122
           FK +TK  PKKV KP  KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAASLLGE +TGK
Sbjct: 62  FKPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGK 121

Query: 123 GILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGK 182
           GILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DDP T GLE+AVIPPGK
Sbjct: 122 GILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPT-GLEKAVIPPGK 181

Query: 183 GFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPIN 242
             RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI 
Sbjct: 182 NVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQ 241

Query: 243 EIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           +IEPLVLLNV FFF AA+NPG GKF+TD+ ++
Sbjct: 242 DIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of Cp4.1LG13g04750 vs. ExPASy Swiss-Prot
Match: Q9FPP4 (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN=PSBS PE=2 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.8e-102
Identity = 205/279 (73.48%), Postives = 222/279 (79.57%), Query Frame = 0


Query: 3   AQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGF-------T 62
           AQTMLLT+ A    K +  S  +   R   +    LF PS     S     F       T
Sbjct: 2   AQTMLLTANA----KVDLRSKESLVERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTST 61

Query: 63  TLAVFKSRTKVPPKKVAKP----KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG 122
           T+A+FKS+ K PPKKVA P    KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG
Sbjct: 62  TVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG 121

Query: 123 EGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETA-GLER 182
           E ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGALGDRG+FIDDP  A GLE+
Sbjct: 122 EAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEK 181

Query: 183 AVIPPGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 242
           AVIPPGK F+SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN 
Sbjct: 182 AVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNF 241

Query: 243 ETGVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           ETGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Sbjct: 242 ETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of Cp4.1LG13g04750 vs. ExPASy Swiss-Prot
Match: P54773 (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBS PE=3 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 2.4e-102
Identity = 205/279 (73.48%), Postives = 224/279 (80.29%), Query Frame = 0


Query: 3   AQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPS-----PSHSVSLPARGF--T 62
           AQTMLLT+ A    K +  S  +   R   +    LF PS      S S +  +  F  T
Sbjct: 2   AQTMLLTANA----KVDLRSKESLVERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTST 61

Query: 63  TLAVFKSRTKVPPKKVAKP----KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG 122
           T+A+FKS+ K PPKKVA P    KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG
Sbjct: 62  TVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG 121

Query: 123 EGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDP-ETAGLER 182
           E ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGALGDRGKF+DDP    GLE+
Sbjct: 122 EAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEK 181

Query: 183 AVIPPGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 242
           AVIPPGK F+SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN 
Sbjct: 182 AVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNF 241

Query: 243 ETGVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           ETGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Sbjct: 242 ETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of Cp4.1LG13g04750 vs. ExPASy Swiss-Prot
Match: Q9SMB4 (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBS PE=2 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.0e-100
Identity = 202/277 (72.92%), Postives = 224/277 (80.87%), Query Frame = 0


Query: 3   AQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPS-----PSHSVSLPAR-GFTT 62
           AQTMLLT+ A    + + + +     +P + F    F PS     PS S S  +    TT
Sbjct: 2   AQTMLLTANAKVDLRSKESLVERLKPKPLSSF----FLPSLPLKYPSASASASSHFTSTT 61

Query: 63  LAVFKSRTKVPPKKVA---KPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 122
           +A+FKS+ K P KKV    K KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 
Sbjct: 62  VALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEA 121

Query: 123 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDP-ETAGLERAV 182
           ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGAL DRGKFIDDP    GL++AV
Sbjct: 122 ITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAV 181

Query: 183 IPPGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 242
           IPPGKGF+SALGL EGGPLF FTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ET
Sbjct: 182 IPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFET 241

Query: 243 GVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           GVPINEIEPL+L N+VFFF+AA+NPGTGKFVTDEE++
Sbjct: 242 GVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274

[Close]

BLAST of Cp4.1LG13g04750 vs. NCBI nr
Match: XP_023549599.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 532 bits (1370), Expect = 2.04e-190
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MAAQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTTLAVF 60
           MAAQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTTLAVF
Sbjct: 1   MAAQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTTLAVF 60

Query: 61  KSRTKVPPKKVAKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120
           KSRTKVPPKKVAKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL
Sbjct: 61  KSRTKVPPKKVAKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120

Query: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFR 180
           AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFR
Sbjct: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFR 180

Query: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240
           SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE
Sbjct: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240

Query: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
           PLVLLNVVFFFIAALNPGTGKFVTDEEDDD
Sbjct: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270

[Close]

BLAST of Cp4.1LG13g04750 vs. NCBI nr
Match: KAG6578969.1 (Photosystem II 22 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016490.1 Photosystem II 22 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 516 bits (1328), Expect = 5.15e-184
Identity = 262/270 (97.04%), Postives = 264/270 (97.78%), Query Frame = 0


Query: 1   MAAQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTTLAVF 60
           MAAQTMLLTSGACAGHK+EFASIFT TLRPN Q T LLFNPSP HSVSLPARGFTTLA F
Sbjct: 1   MAAQTMLLTSGACAGHKREFASIFTPTLRPNAQVTRLLFNPSPPHSVSLPARGFTTLAAF 60

Query: 61  KSRTKVPPKKVAKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120
           KSRTKVPPKKV+KPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL
Sbjct: 61  KSRTKVPPKKVSKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120

Query: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFR 180
           AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFR
Sbjct: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFR 180

Query: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240
           SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE
Sbjct: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240

Query: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
           PLVLLNVVFFFIAALNPGTGKFVTDEEDDD
Sbjct: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270

[Close]

BLAST of Cp4.1LG13g04750 vs. NCBI nr
Match: XP_022993721.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 515 bits (1327), Expect = 7.31e-184
Identity = 261/270 (96.67%), Postives = 265/270 (98.15%), Query Frame = 0


Query: 1   MAAQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTTLAVF 60
           MAAQTMLLTSGACAGHK+EFASIFT+TLRPN Q T LLFNPSPSHSV+LPARGFTTLA F
Sbjct: 1   MAAQTMLLTSGACAGHKREFASIFTQTLRPNAQVTRLLFNPSPSHSVTLPARGFTTLAAF 60

Query: 61  KSRTKVPPKKVAKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120
           KSRTKVPPKKV+KPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL
Sbjct: 61  KSRTKVPPKKVSKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120

Query: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFR 180
           AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGK FR
Sbjct: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKSFR 180

Query: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240
           SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE
Sbjct: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240

Query: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
           PLVLLNVVFFFIAALNPGTGKFVTDEEDDD
Sbjct: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270

[Close]

BLAST of Cp4.1LG13g04750 vs. NCBI nr
Match: XP_022939950.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 510 bits (1314), Expect = 7.01e-182
Identity = 260/270 (96.30%), Postives = 262/270 (97.04%), Query Frame = 0


Query: 1   MAAQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTTLAVF 60
           MAAQTMLLTSGACAGHK +FASIFT TLRPN Q T LLFNPSP HSVSLPARGFTTLA F
Sbjct: 1   MAAQTMLLTSGACAGHKIDFASIFTPTLRPNAQVTRLLFNPSPPHSVSLPARGFTTLAAF 60

Query: 61  KSRTKVPPKKVAKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120
           KSRTKVPPKKV+KPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL
Sbjct: 61  KSRTKVPPKKVSKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120

Query: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFR 180
           AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGK FR
Sbjct: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKSFR 180

Query: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240
           SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE
Sbjct: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240

Query: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
           PLVLLNVVFFFIAALNPGTGKFVTDEEDDD
Sbjct: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270

[Close]

BLAST of Cp4.1LG13g04750 vs. NCBI nr
Match: XP_038885143.1 (photosystem II 22 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 468 bits (1203), Expect = 6.00e-165
Identity = 247/277 (89.17%), Postives = 252/277 (90.97%), Query Frame = 0


Query: 1   MAAQTMLLTSGACAGH----KKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTT 60
           MAAQTMLLTSG C GH    K+E        LRPN QF+ L FNP PSHSVSLPARGFTT
Sbjct: 1   MAAQTMLLTSGVCVGHGVGVKRELR------LRPNAQFSRLFFNPLPSHSVSLPARGFTT 60

Query: 61  LAVFKSRTKVPPKKVAKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 120
           LAVFKSRTK PPKKV+KPK  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE I
Sbjct: 61  LAVFKSRTKAPPKKVSKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 120

Query: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETA-GLERAVI 180
           TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPE A GLERAVI
Sbjct: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180

Query: 181 PPGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240
           PPGK FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 181 PPGKNFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240

Query: 241 VPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
           VPINEIEPLVLLNVVFFFIAA+NPGTGKFVTDEEDD+
Sbjct: 241 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 271

[Close]

BLAST of Cp4.1LG13g04750 vs. ExPASy TrEMBL
Match: A0A6J1JX49 (photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489635 PE=4 SV=1)

HSP 1 Score: 515 bits (1327), Expect = 3.54e-184
Identity = 261/270 (96.67%), Postives = 265/270 (98.15%), Query Frame = 0


Query: 1   MAAQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTTLAVF 60
           MAAQTMLLTSGACAGHK+EFASIFT+TLRPN Q T LLFNPSPSHSV+LPARGFTTLA F
Sbjct: 1   MAAQTMLLTSGACAGHKREFASIFTQTLRPNAQVTRLLFNPSPSHSVTLPARGFTTLAAF 60

Query: 61  KSRTKVPPKKVAKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120
           KSRTKVPPKKV+KPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL
Sbjct: 61  KSRTKVPPKKVSKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120

Query: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFR 180
           AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGK FR
Sbjct: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKSFR 180

Query: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240
           SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE
Sbjct: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240

Query: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
           PLVLLNVVFFFIAALNPGTGKFVTDEEDDD
Sbjct: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270

[Close]

BLAST of Cp4.1LG13g04750 vs. ExPASy TrEMBL
Match: A0A6J1FP79 (photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445661 PE=4 SV=1)

HSP 1 Score: 510 bits (1314), Expect = 3.39e-182
Identity = 260/270 (96.30%), Postives = 262/270 (97.04%), Query Frame = 0


Query: 1   MAAQTMLLTSGACAGHKKEFASIFTRTLRPNTQFTHLLFNPSPSHSVSLPARGFTTLAVF 60
           MAAQTMLLTSGACAGHK +FASIFT TLRPN Q T LLFNPSP HSVSLPARGFTTLA F
Sbjct: 1   MAAQTMLLTSGACAGHKIDFASIFTPTLRPNAQVTRLLFNPSPPHSVSLPARGFTTLAAF 60

Query: 61  KSRTKVPPKKVAKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120
           KSRTKVPPKKV+KPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL
Sbjct: 61  KSRTKVPPKKVSKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGIL 120

Query: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKGFR 180
           AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGK FR
Sbjct: 121 AQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGKSFR 180

Query: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240
           SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE
Sbjct: 181 SALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIE 240

Query: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
           PLVLLNVVFFFIAALNPGTGKFVTDEEDDD
Sbjct: 241 PLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270

[Close]

BLAST of Cp4.1LG13g04750 vs. ExPASy TrEMBL
Match: A0A0A0K7N4 (Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1)

HSP 1 Score: 463 bits (1192), Expect = 1.43e-163
Identity = 246/278 (88.49%), Postives = 252/278 (90.65%), Query Frame = 0


Query: 1   MAAQTMLLTSGACAGH----KKEFASIFTRTLRPN-TQFTHLLFNPSPSHSVSLPARGFT 60
           MAAQTMLLTSG C GH    K+E +      LRPN TQFT L FNP PSHSVSLP RGFT
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS------LRPNYTQFTRLFFNPLPSHSVSLPPRGFT 60

Query: 61  TLAVFKSRTKVPPKKVAKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120
           TLAVFKSRTK PPKKV KPK  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE 
Sbjct: 61  TLAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEA 120

Query: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETA-GLERAV 180
           ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPE A GLERAV
Sbjct: 121 ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180

Query: 181 IPPGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGK FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
           GVPINEIEPLVLLNVVFFFIAA+NPGTGKFVTDEEDD+
Sbjct: 241 GVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of Cp4.1LG13g04750 vs. ExPASy TrEMBL
Match: A0A5A7UZ08 (Photosystem II 22 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00970 PE=4 SV=1)

HSP 1 Score: 461 bits (1185), Expect = 1.66e-162
Identity = 245/278 (88.13%), Postives = 251/278 (90.29%), Query Frame = 0


Query: 1   MAAQTMLLTSGACAGH----KKEFASIFTRTLRPNT-QFTHLLFNPSPSHSVSLPARGFT 60
           MAAQTMLLTSG C GH    K+E +      LRPN  QFT L FNP P+HSVSLPARGFT
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS------LRPNNNQFTRLFFNPLPNHSVSLPARGFT 60

Query: 61  TLAVFKSRTKVPPKKVAKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120
            LAVFKSRTK PPKKV KPK  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 
Sbjct: 61  PLAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEA 120

Query: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETA-GLERAV 180
           ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPE A GLERAV
Sbjct: 121 ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180

Query: 181 IPPGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGK FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
           GVPINEIEPLVLLNVVFFFIAA+NPGTGKFVTDEEDD+
Sbjct: 241 GVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of Cp4.1LG13g04750 vs. ExPASy TrEMBL
Match: A0A1S3CS23 (photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103504056 PE=4 SV=1)

HSP 1 Score: 461 bits (1185), Expect = 1.66e-162
Identity = 245/278 (88.13%), Postives = 251/278 (90.29%), Query Frame = 0


Query: 1   MAAQTMLLTSGACAGH----KKEFASIFTRTLRPNT-QFTHLLFNPSPSHSVSLPARGFT 60
           MAAQTMLLTSG C GH    K+E +      LRPN  QFT L FNP P+HSVSLPARGFT
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS------LRPNNNQFTRLFFNPLPNHSVSLPARGFT 60

Query: 61  TLAVFKSRTKVPPKKVAKPK--VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120
            LAVFKSRTK PPKKV KPK  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 
Sbjct: 61  PLAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEA 120

Query: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETA-GLERAV 180
           ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPE A GLERAV
Sbjct: 121 ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180

Query: 181 IPPGKGFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGK FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVVFFFIAALNPGTGKFVTDEEDDD 270
           GVPINEIEPLVLLNVVFFFIAA+NPGTGKFVTDEEDD+
Sbjct: 241 GVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of Cp4.1LG13g04750 vs. TAIR 10
Match: AT1G44575.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 378.3 bits (970), Expect = 5.3e-105
Identity = 208/272 (76.47%), Postives = 224/272 (82.35%), Query Frame = 0


Query: 3   AQTMLLTSGACAGHKKEFASIFTRTLRPNTQ-FTHLLFNPSPSHSVSLPAR--GFTTLAV 62
           AQTMLLTSG  AGH       F R   P  Q   H LF  S +  V+LP+R   F  LA+
Sbjct: 2   AQTMLLTSGVTAGH-------FLRNKSPLAQPKVHHLF-LSGNSPVALPSRRQSFVPLAL 61

Query: 63  FKSRTKVPPKKVAKP--KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGK 122
           FK +TK  PKKV KP  KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAASLLGE +TGK
Sbjct: 62  FKPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGK 121

Query: 123 GILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGK 182
           GILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DDP T GLE+AVIPPGK
Sbjct: 122 GILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPT-GLEKAVIPPGK 181

Query: 183 GFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPIN 242
             RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI 
Sbjct: 182 NVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQ 241

Query: 243 EIEPLVLLNVVFFFIAALNPGTGKFVTDEEDD 270
           +IEPLVLLNV FFF AA+NPG GKF+TD+ ++
Sbjct: 242 DIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of Cp4.1LG13g04750 vs. TAIR 10
Match: AT1G44575.2 (Chlorophyll A-B binding family protein )

HSP 1 Score: 243.4 bits (620), Expect = 2.1e-64
Identity = 141/192 (73.44%), Postives = 150/192 (78.12%), Query Frame = 0


Query: 3   AQTMLLTSGACAGHKKEFASIFTRTLRPNTQ-FTHLLFNPSPSHSVSLPAR--GFTTLAV 62
           AQTMLLTSG  AGH       F R   P  Q   H LF  S +  V+LP+R   F  LA+
Sbjct: 2   AQTMLLTSGVTAGH-------FLRNKSPLAQPKVHHLF-LSGNSPVALPSRRQSFVPLAL 61

Query: 63  FKSRTKVPPKKVAKP--KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGK 122
           FK +TK  PKKV KP  KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAASLLGE +TGK
Sbjct: 62  FKPKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGK 121

Query: 123 GILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPETAGLERAVIPPGK 182
           GILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DDP T GLE+AVIPPGK
Sbjct: 122 GILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPT-GLEKAVIPPGK 181

Query: 183 GFRSALGLKEGG 190
             RSALGLKE G
Sbjct: 182 NVRSALGLKEQG 184

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g04750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q02060	3.4e-104	73.91	Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSB...	[more]
Q9XF91	7.5e-104	76.47	Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9FPP4	1.8e-102	73.48	Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN...	[more]
P54773	2.4e-102	73.48	Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=...	[more]
Q9SMB4	1.0e-100	72.92	Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSB...	[more]

BLAST of Cp4.1LG13g04750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549599.1	2.04e-190	100.00	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6578969.1	5.15e-184	97.04	Photosystem II 22 kDa protein, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_022993721.1	7.31e-184	96.67	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_022939950.1	7.01e-182	96.30	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata]	[more]
XP_038885143.1	6.00e-165	89.17	photosystem II 22 kDa protein, chloroplastic [Benincasa hispida]	[more]

BLAST of Cp4.1LG13g04750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JX49	3.54e-184	96.67	photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1FP79	3.39e-182	96.30	photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A0A0K7N4	1.43e-163	88.49	Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1	[more]
A0A5A7UZ08	1.66e-162	88.13	Photosystem II 22 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS23	1.66e-162	88.13	photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of Cp4.1LG13g04750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44575.1	5.3e-105	76.47	Chlorophyll A-B binding family protein	[more]
AT1G44575.2	2.1e-64	73.44	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 85..214 e-value: 8.2E-9 score: 36.2
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 133..240 e-value: 6.4E-7 score: 31.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 17..132 e-value: 1.0E-5 score: 27.7
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 192..255
None	No IPR available	PANTHER	PTHR14154:SF74	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 192..255
None	No IPR available	PANTHER	PTHR14154:SF74	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 3..181
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 3..181
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 64..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g04750.1	Cp4.1LG13g04750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019904	protein domain specific binding