Cp4.1LG13g04200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g04200
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein MKS1-like
Location	Cp4.1LG13: 6294724 .. 6297911 (+)
RNA-Seq Expression	Cp4.1LG13g04200
Synteny	Cp4.1LG13g04200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCGTTATAGACTTAGGGTTTGACGGTTTCAACCATGAAAAATNTAACTTATCTTTATATAAACCTTTCAACTCTCCATGTCTTCTTCTCTTTGTTCTTCTAACACCTAATGCCATGGCTGAAAGAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCGTCATCGCTAGATTTCTTCCAAAACTTCCCTGATTTACATTGATTTTGTTTGCATAATTAATTGTATTTAATTTTATCGTTATTTATGTAGAAAAAATCTATAAAGTTTAAGCATAATGATACAATGAGAGACTTTTCCCCATTTTTGTATGATTGTAAGTGGGAGTAGTTCGATGTCTTTTACCTTATAAAACGAAACCTTCGTGAAAAAAATAACCTAACATCTATTTTATCGAATATTTTCTCAAATTTTATCATAATTTTAATTAAGTTTTTATAATCAATGAAAACAAATTAATTTGAAAATGAATTTTTCGATATTAGCAAAAGTCAGTGAATAAGTTTTAAATTTTAAATATTATTTCATTTTTTCCGAAGTAATAATTATCTTAATCAATTAAATTACAGTAAAATTAAAAAAAATCAAATTTATAATCTAATAATAAATATATATTATATTTTTATCTCTAAATTTTGAGTTTAATTTCCAACCATATTACAAATTAAAAATTAAAAATTAAAATTCATTTTGGGTCTATTAATTCTACCATTTAAACCACATTTTTAAAAGTATTTTTAATTAATTAACAATATTAATAACCAAAAAATTGAAATTTATTTATATATATATGTGCAAGAAATCCGCCAAATTGTGAAAGAAATGAGAGAATGGATTCTACGGCCACCAGAAAGCGAAAGATGAAGAAGCCGCCGGCGCCGCCGAGGGCCGCGAAAGCCCAAGCGCCGGCGAAAATGAGGAAGTCGAAGAAAATCATTGAAGTAGAAGAAGACGCCTCAGAGTTCAGGCACATGGTTCAATTCCCTGGCAGCAGTAGCAGCCGCTCCGACTCCGATTCCGACCACCCTTCTACTCCCACTTCCACTTCTACTTCTTCTTCCACTTTTTCCGATGGCCGGAATGGTTTATCGCCGTCGACGGAAGAACTGAGCGTTTATGATTACGAGGGCTGGGAAGACCCTCTTGTAATTGTAAAACCACGGCCCTCTCCCGGAATTCCTCCATTAACAACGTATTCCGGTTTTGATTACTCCGGTTTGGTTTATCCACTTCCGCCGGTTTTCAAGAACCCTCTGCCTCCGCTTTACTACCGGCCCGACTTTCCCGACCCCAATTAATTCCATCCCTCCTCGATTTCTTCTTATTATTATTATTACTTTTTACTGCTGTGAAATTTCTTGTATTCGTTTAATATATCTACAAACTGTTAGAGATCAAGATTTACCCGTTTTACCTTTTTACTCCGTTTACTTACCCGCTAATTTACAGAATGATCGTGGCTTTATAAACAAAGAATACTCTCTCTATTGGTACGAGACCCTTTGAGAAAGTCCAAAGCAAAGTCACGAGAGCTTATGCTCAAAGTGAACAATATCATACCATTGTGGAGGGTCGTGTTCGTCTAACATGGTATTAGAGTCATGCCTTAAATTTAGTCGTGCCAATAGATTGGTAAATTCTCAAATATCGAACAAAAGACTCCCAAAGAATCGAGGCTCGATTAAGGAGAGACGCAATAAAAAAAGAACCACATTCTCTACTTTAGGGAATGATCATGGGTTTACAAATAAAGAATACTCTCTCTATTGTAACAATTTTATCTCTGTTAAATTTCATATTTATTTAATTTTAAAATTTTAAAATTACCCGTTAATTTGAATATAATTATTATTAAATATGAATAGAATGTCGTTATCGTTCATTTATATTGATTTATATTTTGATATTTTTAATATTTTTATTATTGGTTTTTATATTATAGTTTTATTCTTATTAAATAAACAACATGGCTAGTTTTAAAAAAATGAATTTCCTAAAAAGATTATTTTTATATTAAAAAAAAAAATTGTAGGAAAAAGAGGGCTAAATAATTAAAAGAAAGTCAAAAGAATGGCATCTTTGTTTATGCCATTAAAAACATTTTAATTTATCCCCCAATATTTTAAAAATATATCTAAACATCAACTATACAAATAAATTAATAATTTTCTATGGTATTGAGATGACATATGTANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGACAAATTCAAACTTCTAAACCACCAAGAAACCCTTAAATATTGATATTAATATTAAATACTCTAACTTATCTTTATATAAACCTTTCAACTCTCCATGTCTTCTTCTCTTTGTTCTTCTAACACCTAATGCCATGGCTGAAAGAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCGTCATCGCTAGATTTCTTCCAAAACTTCCCTGATTTACATTGA

mRNA sequence

ATGGTATCAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCGTCATCGCTAGATTTCTTCCAAAACTTCCCTGATTTACATTGA

Coding sequence (CDS)

ATGGTATCAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCGTCATCGCTAGATTTCTTCCAAAACTTCCCTGATTTACATTGA

Protein sequence

MVSKEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPSSHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHFFRDLSPIAPNRFSKEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPSSHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHFFRDLSPIAPNRFSSSLDFFQNFPDLH

Homology

[Close]

BLAST of Cp4.1LG13g04200 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 4.9e-13
Identity = 58/183 (31.69%), Postives = 80/183 (43.72%), Query Frame = 0


Query: 121 THFFRDLSPIAPNRFSKEVQLQGPRPAALKITKDSHKIGKP-----------------PH 180
           + +F   +P       +++Q+ GPRP+ L + KDSHKI KP                 P 
Sbjct: 4   SEYFAGGNPSDQQNQKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPR 63

Query: 181 RPVIIYTVSPKVIHTDPTQFKDLVQRLT-------------------------------- 240
            PV+IY VSPKV+H   ++F ++VQRLT                                
Sbjct: 64  EPVVIYAVSPKVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRG 123

Query: 241 GHKPSSHDSHHSPNTTMIMSTNHQGAERVGH--GILSPTPGLLPPIPTNIFTPTPPQSAE 253
           G +P++ D     NT M      + AE  G+  GILSP+P LLP   T IF+P   Q   
Sbjct: 124 GKEPAARDETVEINTAM-----EEAAEFGGYAPGILSPSPALLPTASTGIFSPMYHQGGM 181

[Close]

BLAST of Cp4.1LG13g04200 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08
Identity = 41/120 (34.17%), Postives = 54/120 (45.00%), Query Frame = 0


Query: 133 NRFSKEVQLQGPRPAALKITKDSHKI-------------------------GKPPHRPVI 192
           NR  +     GP+P  LK+  DSHKI                          +PP  PV 
Sbjct: 3   NRSPRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVN 62

Query: 193 IYTVSPKVIHTDPTQFKDLVQRLTGHKPSSHDSHHSPNTTMIMSTNHQGAERVGHGILSP 228
           IYTV+P++IHT P  F  LVQRLTG   +S  S  S ++T          +   HG++SP
Sbjct: 63  IYTVTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVD-TSHGLISP 121

[Close]

BLAST of Cp4.1LG13g04200 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.1e-08
Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 11  PRPAALKITKDSHKIGKP-----------PHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 67
           P P  LK+ KDSH I KP           P  PVIIYT +P++IHT+P  F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Cp4.1LG13g04200 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.7e-05
Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 7  QLQGPRPAALKITKDSHKIGKP--------PH---RPVIIYTVSPKVIHTDPTQFKDLVQ 60
          ++ G RP++LK+  +SH I K         PH    PVIIY  SPKVIHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

[Close]

BLAST of Cp4.1LG13g04200 vs. NCBI nr
Match: XP_023551504.1 (protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299 bits (766), Expect = 4.50e-100
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 137 KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS 196
           KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS
Sbjct: 5   KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS 64

Query: 197 SHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHF 256
           SHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHF
Sbjct: 65  SHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHF 124

Query: 257 FRDLSPIAPNRFSSSLDFFQNFPDLH 282
           FRDLSPIAPNRFSSSLDFFQNFPDLH
Sbjct: 125 FRDLSPIAPNRFSSSLDFFQNFPDLH 150

[Close]

BLAST of Cp4.1LG13g04200 vs. NCBI nr
Match: KAG6578908.1 (Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016429.1 Protein MKS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294 bits (753), Expect = 6.68e-98
Identity = 143/146 (97.95%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 137 KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS 196
           KE+QLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS
Sbjct: 17  KELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS 76

Query: 197 SHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHF 256
           SHDSHH PNTTMIMSTNHQGAERVGHGILSPTPGLLPPIP NIFTPTPPQSAELSPLTHF
Sbjct: 77  SHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSPLTHF 136

Query: 257 FRDLSPIAPNRFSSSLDFFQNFPDLH 282
           FRDLSPIAPNRFSSSLDFFQNFPDLH
Sbjct: 137 FRDLSPIAPNRFSSSLDFFQNFPDLH 162

[Close]

BLAST of Cp4.1LG13g04200 vs. NCBI nr
Match: XP_022939148.1 (protein MKS1-like [Cucurbita moschata])

HSP 1 Score: 290 bits (743), Expect = 1.42e-96
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 137 KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS 196
           KE+QLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS
Sbjct: 5   KELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS 64

Query: 197 SHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHF 256
           SHDSHH PNTTMIMSTNHQG ERVGHGILSPTPGLLPPIP NIFTPTPPQSAELSPLTHF
Sbjct: 65  SHDSHHPPNTTMIMSTNHQGTERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSPLTHF 124

Query: 257 FRDLSPIAPNRFSSSLDFFQNFPDLH 282
           FRDLSPIAPNRFS SLDFFQNFPDLH
Sbjct: 125 FRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Cp4.1LG13g04200 vs. NCBI nr
Match: XP_022993351.1 (protein MKS1-like [Cucurbita maxima])

HSP 1 Score: 286 bits (731), Expect = 9.46e-95
Identity = 140/146 (95.89%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 137 KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS 196
           KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIY+VSPKVIHTDPTQFKDLVQRLTGHKPS
Sbjct: 5   KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYSVSPKVIHTDPTQFKDLVQRLTGHKPS 64

Query: 197 SHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHF 256
           SHDSHH PNTTMIMSTN  GAERVGHGILSPTPGLLPPIP NIFTPTPPQSAELSPLTHF
Sbjct: 65  SHDSHHPPNTTMIMSTNPHGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSPLTHF 124

Query: 257 FRDLSPIAPNRFSSSLDFFQNFPDLH 282
           FRDLSPIAPNRFS SLDFFQNFPDLH
Sbjct: 125 FRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Cp4.1LG13g04200 vs. NCBI nr
Match: XP_038885910.1 (protein MKS1-like [Benincasa hispida])

HSP 1 Score: 197 bits (501), Expect = 1.33e-59
Identity = 113/165 (68.48%), Postives = 125/165 (75.76%), Query Frame = 0


Query: 137 KEVQLQGPRPAALKITKDSHKIGKPP--------HRPVIIYTVSPKVIHTDPTQFKDLVQ 196
           KEV LQGPRPAALKITKDSHKI KPP        HRPVIIYTVSPK+IHT+PT+FKDLVQ
Sbjct: 5   KEVHLQGPRPAALKITKDSHKIKKPPLPPPHPPPHRPVIIYTVSPKIIHTEPTEFKDLVQ 64

Query: 197 RLTGHKPSSHDS--HHSPNTTMIMSTNH--QGAERVGHGILSPTPGLLPPIPTNIFTPTP 256
           RLTG +PSS +    H  + +M M+TN   QG ERVGHGILSPTPGLLPPI +NIFTP P
Sbjct: 65  RLTGLRPSSSNDALDHPTSMSMSMNTNSIDQGVERVGHGILSPTPGLLPPISSNIFTP-P 124

Query: 257 PQSA------ELSPLTHFFRDLSPIAPNRFSSSLDFFQ-NFPDLH 282
           PQ+A      + SP T FF+D SPIA N FSSSLDFFQ NFPD H
Sbjct: 125 PQAAMAAAATDPSPFTQFFQDFSPIATNHFSSSLDFFQQNFPDFH 168

[Close]

BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL
Match: A0A6J1FKV1 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1)

HSP 1 Score: 290 bits (743), Expect = 6.86e-97
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 137 KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS 196
           KE+QLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS
Sbjct: 5   KELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS 64

Query: 197 SHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHF 256
           SHDSHH PNTTMIMSTNHQG ERVGHGILSPTPGLLPPIP NIFTPTPPQSAELSPLTHF
Sbjct: 65  SHDSHHPPNTTMIMSTNHQGTERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSPLTHF 124

Query: 257 FRDLSPIAPNRFSSSLDFFQNFPDLH 282
           FRDLSPIAPNRFS SLDFFQNFPDLH
Sbjct: 125 FRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL
Match: A0A6J1JW33 (protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 4.58e-95
Identity = 140/146 (95.89%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 137 KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPS 196
           KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIY+VSPKVIHTDPTQFKDLVQRLTGHKPS
Sbjct: 5   KEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYSVSPKVIHTDPTQFKDLVQRLTGHKPS 64

Query: 197 SHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHF 256
           SHDSHH PNTTMIMSTN  GAERVGHGILSPTPGLLPPIP NIFTPTPPQSAELSPLTHF
Sbjct: 65  SHDSHHPPNTTMIMSTNPHGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSPLTHF 124

Query: 257 FRDLSPIAPNRFSSSLDFFQNFPDLH 282
           FRDLSPIAPNRFS SLDFFQNFPDLH
Sbjct: 125 FRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL
Match: A0A0A0KI80 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 1.88e-53
Identity = 108/173 (62.43%), Postives = 120/173 (69.36%), Query Frame = 0


Query: 137 KEVQLQGPRPAALKITKDSHKIGKPP------HRPVIIYTVSPKVIHTDPTQFKDLVQRL 196
           KE+QLQGPRP+ALKITKDSHKI KPP      HRPVIIYTVSPK+IHTDPT+FKDLVQRL
Sbjct: 5   KELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDLVQRL 64

Query: 197 TGHK--PSS-------HDSHHSPNTTMIMSTN-----HQGAERV-GHGILSPTPGLLPPI 256
           TGH   PSS       HD H  P+   I +T+       G +R+  HGILSPTPGLLPPI
Sbjct: 65  TGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGLLPPI 124

Query: 257 PTNIFTPTPPQSA-----ELSPLTHFFRDLSPIAPNRFSSSLDFFQ-NFPDLH 282
            + IF P P   A     +L+ LT FF DLSPIA N FSSSLDFFQ NFPD H
Sbjct: 125 SSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL
Match: A0A5A7UZA1 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00830 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.17e-51
Identity = 106/172 (61.63%), Postives = 120/172 (69.77%), Query Frame = 0


Query: 137 KEVQLQGPRPAALKITKDSHKIGKPP------HRPVIIYTVSPKVIHTDPTQFKDLVQRL 196
           KE+QLQGPRP+ALKITKDSHKI KPP      HRPVIIYTVSPK+IHTDPTQFKDLVQRL
Sbjct: 5   KELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQRL 64

Query: 197 TGH-KPSSHDSHHS-------PNTTMIMSTNH-----QGAERV-GHGILSPTPGLLPPIP 256
           TGH +P S  S+H+       P+   I  T+       G +R+  HGILSPTPGLLPPI 
Sbjct: 65  TGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPPIS 124

Query: 257 TNIFTPTPPQSA-----ELSPLTHFFRDLSPIAPNRFSSSLDFFQ-NFPDLH 282
             IF+  PPQ+A     +L+ LT FF DLSPI  N FS SLDFFQ NFPD H
Sbjct: 125 PTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176

[Close]

BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL
Match: A0A1S3B4N1 (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 3.57e-50
Identity = 104/172 (60.47%), Postives = 120/172 (69.77%), Query Frame = 0


Query: 137 KEVQLQGPRPAALKITKDSHKIGKPP------HRPVIIYTVSPKVIHTDPTQFKDLVQRL 196
           +++QLQGPRP+ALKITKDSHKI KPP      HRPVIIYTVSPK+IHTDPTQFKDLVQRL
Sbjct: 37  RKLQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQRL 96

Query: 197 TGH-KPSSHDSHHS-------PNTTMIMSTNH-----QGAERV-GHGILSPTPGLLPPIP 256
           TGH +P S  S+H+       P+   I  T+       G +R+  HGILSPTPGLLPPI 
Sbjct: 97  TGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPPIS 156

Query: 257 TNIFTPTPPQSA-----ELSPLTHFFRDLSPIAPNRFSSSLDFFQ-NFPDLH 282
             IF+  PPQ+A     +L+ LT FF DLSPI  N FS SLDFFQ NFPD H
Sbjct: 157 PTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 208

[Close]

BLAST of Cp4.1LG13g04200 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 76.6 bits (187), Expect = 3.5e-14
Identity = 58/183 (31.69%), Postives = 80/183 (43.72%), Query Frame = 0


Query: 121 THFFRDLSPIAPNRFSKEVQLQGPRPAALKITKDSHKIGKP-----------------PH 180
           + +F   +P       +++Q+ GPRP+ L + KDSHKI KP                 P 
Sbjct: 4   SEYFAGGNPSDQQNQKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPR 63

Query: 181 RPVIIYTVSPKVIHTDPTQFKDLVQRLT-------------------------------- 240
            PV+IY VSPKV+H   ++F ++VQRLT                                
Sbjct: 64  EPVVIYAVSPKVVHATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRG 123

Query: 241 GHKPSSHDSHHSPNTTMIMSTNHQGAERVGH--GILSPTPGLLPPIPTNIFTPTPPQSAE 253
           G +P++ D     NT M      + AE  G+  GILSP+P LLP   T IF+P   Q   
Sbjct: 124 GKEPAARDETVEINTAM-----EEAAEFGGYAPGILSPSPALLPTASTGIFSPMYHQGGM 181

[Close]

BLAST of Cp4.1LG13g04200 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-11
Identity = 71/241 (29.46%), Postives = 93/241 (38.59%), Query Frame = 0


Query: 133 NRFSKEVQLQGPRPAALKITKDSHKI-------------------------GKPPHRPVI 192
           NR  +   + GPRP  LK+  DSHKI                          +PP  PVI
Sbjct: 3   NRSPRSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVI 62

Query: 193 IYTVSPKVIHTDPTQFKDLVQRLTGH-KPSSHDSHHSPNT------TMIMSTNH------ 252
           IYTVSP++IHT P  F  LVQRLTG    S+  S +S +T      + ++ T+H      
Sbjct: 63  IYTVSPRIIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKDASTMVDTSHGLISPA 122

Query: 253 --------------------------------------------QGAERVGH---GILSP 281
                                                       QG ER      GILSP
Sbjct: 123 ARFAVTEKANISNELGTFVGGEGTMDQYYHYHHHHHHQEQQHQNQGFERPSFHHAGILSP 182

[Close]

BLAST of Cp4.1LG13g04200 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 62.0 bits (149), Expect = 8.8e-10
Identity = 41/120 (34.17%), Postives = 54/120 (45.00%), Query Frame = 0


Query: 133 NRFSKEVQLQGPRPAALKITKDSHKI-------------------------GKPPHRPVI 192
           NR  +     GP+P  LK+  DSHKI                          +PP  PV 
Sbjct: 3   NRSPRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVN 62

Query: 193 IYTVSPKVIHTDPTQFKDLVQRLTGHKPSSHDSHHSPNTTMIMSTNHQGAERVGHGILSP 228
           IYTV+P++IHT P  F  LVQRLTG   +S  S  S ++T          +   HG++SP
Sbjct: 63  IYTVTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVD-TSHGLISP 121

[Close]

BLAST of Cp4.1LG13g04200 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-09
Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 11  PRPAALKITKDSHKIGKP-----------PHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 67
           P P  LK+ KDSH I KP           P  PVIIYT +P++IHT+P  F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Cp4.1LG13g04200 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-06
Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 7  QLQGPRPAALKITKDSHKIGKP--------PH---RPVIIYTVSPKVIHTDPTQFKDLVQ 60
          ++ G RP++LK+  +SH I K         PH    PVIIY  SPKVIHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g04200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD5	4.9e-13	31.69	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	1.2e-08	34.17	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q9LS54	8.1e-08	47.76	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	1.7e-05	48.44	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Cp4.1LG13g04200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551504.1	4.50e-100	100.00	protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like...	[more]
KAG6578908.1	6.68e-98	97.95	Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016429.1 Prot...	[more]
XP_022939148.1	1.42e-96	96.58	protein MKS1-like [Cucurbita moschata]	[more]
XP_022993351.1	9.46e-95	95.89	protein MKS1-like [Cucurbita maxima]	[more]
XP_038885910.1	1.33e-59	68.48	protein MKS1-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKV1	6.86e-97	96.58	protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1	[more]
A0A6J1JW33	4.58e-95	95.89	protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1	[more]
A0A0A0KI80	1.88e-53	62.43	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=...	[more]
A0A5A7UZA1	1.17e-51	61.63	Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G008...	[more]
A0A1S3B4N1	3.57e-50	60.47	protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1	[more]

BLAST of Cp4.1LG13g04200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18690.1	3.5e-14	31.69	MAP kinase substrate 1	[more]
AT1G21326.1	2.7e-11	29.46	VQ motif-containing protein	[more]
AT1G21320.1	8.8e-10	34.17	nucleotide binding;nucleic acid binding	[more]
AT3G18360.1	5.7e-09	47.76	VQ motif-containing protein	[more]
AT1G68450.1	1.2e-06	48.44	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 170..192 e-value: 9.6E-11 score: 41.0 coord: 37..59 e-value: 9.6E-11 score: 41.0
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 5..75
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 136..208
None	No IPR available	PANTHER	PTHR33143:SF6	F16F4.1 PROTEIN	coord: 136..208
None	No IPR available	PANTHER	PTHR33143:SF6	F16F4.1 PROTEIN	coord: 5..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g04200.1	Cp4.1LG13g04200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus