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Cp4.1LG13g04200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTATCGTTATAGACTTAGGGTTTGACGGTTTCAACCATGAAAAATNTAACTTATCTTTATATAAACCTTTCAACTCTCCATGTCTTCTTCTCTTTGTTCTTCTAACACCTAATGCCATGGCTGAAAGAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCGTCATCGCTAGATTTCTTCCAAAACTTCCCTGATTTACATTGATTTTGTTTGCATAATTAATTGTATTTAATTTTATCGTTATTTATGTAGAAAAAATCTATAAAGTTTAAGCATAATGATACAATGAGAGACTTTTCCCCATTTTTGTATGATTGTAAGTGGGAGTAGTTCGATGTCTTTTACCTTATAAAACGAAACCTTCGTGAAAAAAATAACCTAACATCTATTTTATCGAATATTTTCTCAAATTTTATCATAATTTTAATTAAGTTTTTATAATCAATGAAAACAAATTAATTTGAAAATGAATTTTTCGATATTAGCAAAAGTCAGTGAATAAGTTTTAAATTTTAAATATTATTTCATTTTTTCCGAAGTAATAATTATCTTAATCAATTAAATTACAGTAAAATTAAAAAAAATCAAATTTATAATCTAATAATAAATATATATTATATTTTTATCTCTAAATTTTGAGTTTAATTTCCAACCATATTACAAATTAAAAATTAAAAATTAAAATTCATTTTGGGTCTATTAATTCTACCATTTAAACCACATTTTTAAAAGTATTTTTAATTAATTAACAATATTAATAACCAAAAAATTGAAATTTATTTATATATATATGTGCAAGAAATCCGCCAAATTGTGAAAGAAATGAGAGAATGGATTCTACGGCCACCAGAAAGCGAAAGATGAAGAAGCCGCCGGCGCCGCCGAGGGCCGCGAAAGCCCAAGCGCCGGCGAAAATGAGGAAGTCGAAGAAAATCATTGAAGTAGAAGAAGACGCCTCAGAGTTCAGGCACATGGTTCAATTCCCTGGCAGCAGTAGCAGCCGCTCCGACTCCGATTCCGACCACCCTTCTACTCCCACTTCCACTTCTACTTCTTCTTCCACTTTTTCCGATGGCCGGAATGGTTTATCGCCGTCGACGGAAGAACTGAGCGTTTATGATTACGAGGGCTGGGAAGACCCTCTTGTAATTGTAAAACCACGGCCCTCTCCCGGAATTCCTCCATTAACAACGTATTCCGGTTTTGATTACTCCGGTTTGGTTTATCCACTTCCGCCGGTTTTCAAGAACCCTCTGCCTCCGCTTTACTACCGGCCCGACTTTCCCGACCCCAATTAATTCCATCCCTCCTCGATTTCTTCTTATTATTATTATTACTTTTTACTGCTGTGAAATTTCTTGTATTCGTTTAATATATCTACAAACTGTTAGAGATCAAGATTTACCCGTTTTACCTTTTTACTCCGTTTACTTACCCGCTAATTTACAGAATGATCGTGGCTTTATAAACAAAGAATACTCTCTCTATTGGTACGAGACCCTTTGAGAAAGTCCAAAGCAAAGTCACGAGAGCTTATGCTCAAAGTGAACAATATCATACCATTGTGGAGGGTCGTGTTCGTCTAACATGGTATTAGAGTCATGCCTTAAATTTAGTCGTGCCAATAGATTGGTAAATTCTCAAATATCGAACAAAAGACTCCCAAAGAATCGAGGCTCGATTAAGGAGAGACGCAATAAAAAAAGAACCACATTCTCTACTTTAGGGAATGATCATGGGTTTACAAATAAAGAATACTCTCTCTATTGTAACAATTTTATCTCTGTTAAATTTCATATTTATTTAATTTTAAAATTTTAAAATTACCCGTTAATTTGAATATAATTATTATTAAATATGAATAGAATGTCGTTATCGTTCATTTATATTGATTTATATTTTGATATTTTTAATATTTTTATTATTGGTTTTTATATTATAGTTTTATTCTTATTAAATAAACAACATGGCTAGTTTTAAAAAAATGAATTTCCTAAAAAGATTATTTTTATATTAAAAAAAAAAATTGTAGGAAAAAGAGGGCTAAATAATTAAAAGAAAGTCAAAAGAATGGCATCTTTGTTTATGCCATTAAAAACATTTTAATTTATCCCCCAATATTTTAAAAATATATCTAAACATCAACTATACAAATAAATTAATAATTTTCTATGGTATTGAGATGACATATGTANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGACAAATTCAAACTTCTAAACCACCAAGAAACCCTTAAATATTGATATTAATATTAAATACTCTAACTTATCTTTATATAAACCTTTCAACTCTCCATGTCTTCTTCTCTTTGTTCTTCTAACACCTAATGCCATGGCTGAAAGAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCGTCATCGCTAGATTTCTTCCAAAACTTCCCTGATTTACATTGA ATGGTATCAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCGTCATCGCTAGATTTCTTCCAAAACTTCCCTGATTTACATTGA ATGGTATCAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCAAAAGAGGTTCAACTCCAAGGTCCCCGTCCGGCCGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATTCACCCAATACAACGATGATTATGAGTACCAATCATCAAGGAGCAGAAAGGGTAGGTCACGGAATATTATCGCCAACACCAGGGTTGCTGCCGCCGATTCCGACAAATATTTTCACTCCGACACCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCGAATCGATTCTCGTCATCGCTAGATTTCTTCCAAAACTTCCCTGATTTACATTGA MVSKEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPSSHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHFFRDLSPIAPNRFSKEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPSSHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSPLTHFFRDLSPIAPNRFSSSLDFFQNFPDLH Homology
BLAST of Cp4.1LG13g04200 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2) HSP 1 Score: 76.6 bits (187), Expect = 4.9e-13 Identity = 58/183 (31.69%), Postives = 80/183 (43.72%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08 Identity = 41/120 (34.17%), Postives = 54/120 (45.00%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 8.1e-08 Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 1.7e-05 Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. NCBI nr
Match: XP_023551504.1 (protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 299 bits (766), Expect = 4.50e-100 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. NCBI nr
Match: KAG6578908.1 (Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016429.1 Protein MKS1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 294 bits (753), Expect = 6.68e-98 Identity = 143/146 (97.95%), Postives = 144/146 (98.63%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. NCBI nr
Match: XP_022939148.1 (protein MKS1-like [Cucurbita moschata]) HSP 1 Score: 290 bits (743), Expect = 1.42e-96 Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. NCBI nr
Match: XP_022993351.1 (protein MKS1-like [Cucurbita maxima]) HSP 1 Score: 286 bits (731), Expect = 9.46e-95 Identity = 140/146 (95.89%), Postives = 141/146 (96.58%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. NCBI nr
Match: XP_038885910.1 (protein MKS1-like [Benincasa hispida]) HSP 1 Score: 197 bits (501), Expect = 1.33e-59 Identity = 113/165 (68.48%), Postives = 125/165 (75.76%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL
Match: A0A6J1FKV1 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1) HSP 1 Score: 290 bits (743), Expect = 6.86e-97 Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL
Match: A0A6J1JW33 (protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1) HSP 1 Score: 286 bits (731), Expect = 4.58e-95 Identity = 140/146 (95.89%), Postives = 141/146 (96.58%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL
Match: A0A0A0KI80 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1) HSP 1 Score: 181 bits (459), Expect = 1.88e-53 Identity = 108/173 (62.43%), Postives = 120/173 (69.36%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL
Match: A0A5A7UZA1 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00830 PE=4 SV=1) HSP 1 Score: 176 bits (447), Expect = 1.17e-51 Identity = 106/172 (61.63%), Postives = 120/172 (69.77%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. ExPASy TrEMBL
Match: A0A1S3B4N1 (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1) HSP 1 Score: 174 bits (440), Expect = 3.57e-50 Identity = 104/172 (60.47%), Postives = 120/172 (69.77%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 ) HSP 1 Score: 76.6 bits (187), Expect = 3.5e-14 Identity = 58/183 (31.69%), Postives = 80/183 (43.72%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein ) HSP 1 Score: 67.0 bits (162), Expect = 2.7e-11 Identity = 71/241 (29.46%), Postives = 93/241 (38.59%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding ) HSP 1 Score: 62.0 bits (149), Expect = 8.8e-10 Identity = 41/120 (34.17%), Postives = 54/120 (45.00%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein ) HSP 1 Score: 59.3 bits (142), Expect = 5.7e-09 Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 0
BLAST of Cp4.1LG13g04200 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein ) HSP 1 Score: 51.6 bits (122), Expect = 1.2e-06 Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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