Cp4.1LG13g04190 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g04190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA-binding protein 2-like
Location	Cp4.1LG13: 6317916 .. 6321771 (+)
RNA-Seq Expression	Cp4.1LG13g04190
Synteny	Cp4.1LG13g04190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTAATTTGAGGTAACAGATTATAGCGTAATATCTACGGTGAGGTCTCGCGTATTGGATCCTCCTCACGTGCCTGCGGAGCTTTGTTCTACAGCTTCCCAACATTCACACCTCCAAATTAATCTTCCAGCTAGGGTTTTAACCATCGCTAAATTCCACGTTAAGCTCAATTCATTTTTCTCCTGTTTCCAAGATCGCGTTTTCCCTCTCTCTCGAGCCCTAATTCTGGAAAGCTGCAGCATATATGGCGGATGATTATTGGAATCGGCAGCAGCCTCTGCTTCCCTCGCCAGGCATGCTCAAACGACCTCGTACTGAATATGGTAGGTCCGTGTGTTTATTATGTTTAATTTGGTGCTAATTTGGGTTCGTTGTCGATTTCGAAAGGGTTCTTTTTTGCGTATAATGATTTTGCTTCTAGTTCGGTGGTGAATTTTGATGGGGTTGATTTGTTAAGTTAGTTGTGGATTATCAGTGTTCGCGAATTAATAGAATTTAGGTTTATTCTGATAAAGTTGTAGTTGAGAACTCTGTATGAAGAACGTACCTCCATAGCTTCTTGGTGGGTGTTATGCAGATCTTCGACCCAAGAGGGAGGGAATACTACTCCAGAGTGTTTCTTTCACGGGGTATTAAAACAATTTGGTAGCTCAATGCATTTCATTTGATAGATGAGACAAGCCAAGTTCTTCAAAAGGCAATGGAAAGGATCTCATTAAAGGCTTTAATGTCCTCATCATGAACTAAAATTTGGTGATAATGCCCTCATTTTTCATAATCAGTTTCGAAAGTTTACTAAATATTTTAAAACTAGTTGGGAATCCTAGGGGATGAAGATAAACTTTATAAATTATTCATAAAATTTTCATGATCTCAAGGAAGAAACCTCCACAAATCTCAATTGTGCTGAGGGTAGCTTGCGTTGTCCTATACCTGTATGGTATTCGATCATGGGGAAATCCAAACTCTTCAATGTTTTGGTCCTCAGTAGTGGAGATAATTCATACCGTACGTCTCACTAGATTGACGGTTGCTCTATGTTGAAATTCGACAAAGAGAGTTATTATTTGCTTCACTTCCTATAATGTGAGAGTAGGCGTTCCTATTATCTTTCCAATTGGAGCCGTTGAAGCAGTCAAGTGAGCGGGAAAAGAAAAAAACGAAAAACTAATGCTTACTAACATAATGACATACAGTTCATTTATTAAACATGGTGAGCTGAAACATTCTCTTAATCAGAGGAAAAGAAATCACAAATGATTTTTGCAGTAGGGACAGGTGAAATAGGAGCAACCTAACCTTTGAAAATAGGCTGTGGAAGAGATAGGTAAATGTTGTGCCGTTAGGTGAAGTGGTGAAGTGGTGAAGTGTGCACCCTAGATAGTGGTTCAATATATTCTTGATTTTTTAGAGTTGCTATAAAAATTTGAATAGGACGATGGTAGACTTTTGGTATATATTCGAATGATAATTAAGTTGTAGCAAAAAATTTATTTATTTAGTTTTTTTGAGTATGACTGGGTTGATCTTATACGAAACTTTAGTTGAATATATTGGGTATGATTAACATTTCCATATGATCCATTTATATTGTGATCCCCTTGCATAATAATGTCTAGATACTTCCAGAGCATGATCTGCAGTTGTCAACATATTATTAATTTATTATTGACATCCTACAATTATCTAGAAGCCTTTTTTTTGAAGAAATTTCACTTGATTTCATAACGTTAAAGCTGAGAATTTTTTTGGGATTGAAAGAATTTTTTAAAACTTGATTTACAAATGGTTCTTTTAAGCCTTTGATTTTCTCTTTAACTTTTGCTTTTATAGAGGTTTCCCGTCCATTGAACTTAAAGTAGTGTTATATAGTATTTGGATTGAGAGGATGAAGAGATTAGATATGTGGAATATGAAAGCATAACTGAATTGCTAAGTCGATCCAGTTAGATGGTACGATAGGACTTTCTACAATCATTGAACTTTGTTGATTTAATTGAATATTAATGTAGTGTGTAGACCTCTTTTCTTTGTGACATATCTTTTTATTCCTTTGCTAATGGGGCATCTGTTGTTTCGTGTGTGGAATAAGATCGTTTTTTATTTCTTGATAATAAATGATTCTGCATTAAATGAGTGCATTGCAAGGTGAATTATATTCCACATTTCTTCCATATTGGCTTTTGTAGTTCTTATAGCAGCAATATCTTTTTTCCCTTGTATCTTCTTTCTTACTCTGGATATAAAAGGTTGGAATTGAATTAATTGTAGAATATCGTTTTCTTCGGACAAAATCGGGTCTTGTTAGCTTCTTTCTTCTTTTGGTCTTGTTAGCTGTTTTCCTTTATTGTAAATTGGAAATGGAATTAGGCCCTGCTTTCCCTCTCTTCAGAACCTCCATCCTCTGGATTGCCTGCCGTCCATGAGATGCACAATTATATAGCAAATGATGATCATGGTGGTCCTCGGGCTGTAAAAGATACACAAACAATTGGATCAGCATACGATCGTTATCTCCAAAGTGTGGTATGACTGAAACTACATTCATTTTCTTTTCTTGTCTCCACAGTTTGAGTGCTGAAAACTTTTCATAATTGCTTCTGAAGCAACTTTCTTCTTTTACTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTCTTGCAAACAGAATGCCAATTGCGAATAGAATGCCTGGCCCTTTATTACCCGATCCTGTTGTAATGAGTCGTCCTCTCGCTGTTTCTCCTGATCTTGCGCTTAATGGTCGAAATATTGAGTATAGTAATCATCTTCCTGTAGATTCAACGAACAGACCCATACGTGAAACCGTGCCTCTTCCTCCTGATGCCACCAACACTTTATATGTTGAAGGACTTCCTTCAGATAGTTCCAGGAGGGAAGTAGCTCGTATCCTTTTTCCAGGCGGTGATGCCACTGCAAAATTATATTGGTTTTTTCTCTCTTTCATTTCAGTTACTTAAGAACCACATTCCTTTACTCCAATCTAGATATTTTCCGCCCCTTTGTGGGATATAAAGAACTGAGACTTGTGACCAAAGAATCTAAACATGTAATAGTCCATTACTAGTAACTGTTTTGTTGTTTTTTTATTTTTTACTTTTACTTTTTAACTTTTGAACATCGCTAATCTTTACTATGTTTTTCATGTCACATTTGTTTCTAAATATAGCGTGGCGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTGAATTATATTCATATTTCTTCCATATTGGCTTTTGCAGTTCTTAAAGCATCAATATTCTTTTTCCCTTGTAGCTTCTTTCTTACTTGGGATAGATAATGTTTTAATTGAATTAATTGTAGAATATCATTGTTGACAGTTGGATTTGCTAAAAGATTATGTGATTTGCACAGGTTATAAGATGGACGAACAAGATCCCGAGTCTAATTACTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTCTGGCTCTGGATCTGGCGGCAAAAGGTGAATAATCTTTAGAGACAGGATGAACAATTTAAATGAGAGACGTATGTTCTTGTAGTGCACATTTTACTAGCTGCAATATGCATCCCATTATATGTTAGACATGCTGTTGTTAAGATAGGCAAATTGTAGCCGACTCCACTGAATATGAAAGTTGCATGTAAATTTAAGGGAATTAGGTTCAGAGAGTTTCAATAGTCACTGTGTTCTTGAATATTGATGTACAATCATGTCAATGCTTCAAAATTCAAAAGATATATCTGGTACGTTCTTTATGAACTGTTGTTCTTACCCCC

mRNA sequence

ATGGGATCGCGTTTTCCCTCTCTCTCGAGCCCTAATTCTGGAAAGCTGCAGCATATATGGCGGATGATTATTGGAATCGGCAGCAGCCTCTGCTTCCCTCGCCAGGCATGCTCAAACGACCTCGTACTGAATATGGCCCTGCTTTCCCTCTCTTCAGAACCTCCATCCTCTGGATTGCCTGCCGTCCATGAGATGCACAATTATATAGCAAATGATGATCATGGTGGTCCTCGGGCTGTAAAAGATACACAAACAATTGGATCAGCATACGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTACTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTCTTGCAAACAGAATGCCAATTGCGAATAGAATGCCTGGCCCTTTATTACCCGATCCTGTTGTAATGAGTCGTCCTCTCGCTGTTTCTCCTGATCTTGCGCTTAATGGTCGAAATATTGAGTATAGTAATCATCTTCCTGTAGATTCAACGAACAGACCCATACGTGAAACCGTGCCTCTTCCTCCTGATGCCACCAACACTTTATATGTTGAAGGACTTCCTTCAGATAGTTCCAGGAGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAACTGAGACTTGTGACCAAAGAATCTAAACATCGTGGCGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAGATGGACGAACAAGATCCCGAGTCTAATTACTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTCTGGCTCTGGATCTGGCGGCAAAAGGTGAATAATCTTTAGAGACAGGATGAACAATTTAAATGAGAGACGTATGTTCTTGTAGTGCACATTTTACTAGCTGCAATATGCATCCCATTATATGTTAGACATGCTGTTGTTAAGATAGGCAAATTGTAGCCGACTCCACTGAATATGAAAGTTGCATGTAAATTTAAGGGAATTAGGTTCAGAGAGTTTCAATAGTCACTGTGTTCTTGAATATTGATGTACAATCATGTCAATGCTTCAAAATTCAAAAGATATATCTGGTACGTTCTTTATGAACTGTTGTTCTTACCCCC

Coding sequence (CDS)

ATGGGATCGCGTTTTCCCTCTCTCTCGAGCCCTAATTCTGGAAAGCTGCAGCATATATGGCGGATGATTATTGGAATCGGCAGCAGCCTCTGCTTCCCTCGCCAGGCATGCTCAAACGACCTCGTACTGAATATGGCCCTGCTTTCCCTCTCTTCAGAACCTCCATCCTCTGGATTGCCTGCCGTCCATGAGATGCACAATTATATAGCAAATGATGATCATGGTGGTCCTCGGGCTGTAAAAGATACACAAACAATTGGATCAGCATACGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTACTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTCTTGCAAACAGAATGCCAATTGCGAATAGAATGCCTGGCCCTTTATTACCCGATCCTGTTGTAATGAGTCGTCCTCTCGCTGTTTCTCCTGATCTTGCGCTTAATGGTCGAAATATTGAGTATAGTAATCATCTTCCTGTAGATTCAACGAACAGACCCATACGTGAAACCGTGCCTCTTCCTCCTGATGCCACCAACACTTTATATGTTGAAGGACTTCCTTCAGATAGTTCCAGGAGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAACTGAGACTTGTGACCAAAGAATCTAAACATCGTGGCGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAGATGGACGAACAAGATCCCGAGTCTAATTACTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTCTGGCTCTGGATCTGGCGGCAAAAGGTGA

Protein sequence

MGSRFPSLSSPNSGKLQHIWRMIIGIGSSLCFPRQACSNDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR

Homology

[Close]

BLAST of Cp4.1LG13g04190 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.7e-69
Identity = 138/230 (60.00%), Postives = 171/230 (74.35%), Query Frame = 0


Query: 57  SGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMG 116
           SG+ + +E+HNYIA ++  G + + DT+ +GSAYDR+LQS  L+SF SGE    G +G  
Sbjct: 32  SGVTSGNEVHNYIAQNN--GHQMLNDTKILGSAYDRFLQSAGLTSFNSGEASVIGGVGFA 91

Query: 117 RPLANRMPIANRMPGPLLPDPVVMSRPLAV--SPDLALNGRNIEYSNHLPVDSTNRPIRE 176
           R +         +PG  L DP  M     V   PDL+ NGR++ +   LP+D+ +RP  E
Sbjct: 92  RGV-------GELPGHSLGDPSAMGHLSGVGGGPDLSRNGRDVNFGGQLPIDAVSRPGPE 151

Query: 177 TVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCFVD 236
           T+PLP DA++TLYVEGLPSDS++REVAHIFRPFVGY+E+RLV KESKHRGGDPLILCFVD
Sbjct: 152 TIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVD 211

Query: 237 FANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGS-GSGGKR 284
           FANPACAATA+SALQGYK+DE +PES+YLRLQFSR PG RSG  G  GKR
Sbjct: 212 FANPACAATALSALQGYKVDEINPESSYLRLQFSRSPGRRSGGPGPRGKR 252

[Close]

BLAST of Cp4.1LG13g04190 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.7e-66
Identity = 137/227 (60.35%), Postives = 164/227 (72.25%), Query Frame = 0


Query: 53  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 112
           E P+SGLP+ +EMH     +D  G   VKD++TIGSAYDRYLQ  Q+ SFTSGE  T G 
Sbjct: 27  EMPASGLPSGNEMHYLSREEDRSGHPMVKDSKTIGSAYDRYLQG-QVPSFTSGEASTVGA 86

Query: 113 MGMGRPLANRMPIANRMPGPLLPDPVVM-SRPLAVSPDLALNGRNIEYSNHLPVDSTNRP 172
           +G+ R +         +P   L DP  M  R     PDLA NGR + Y    P+D  +R 
Sbjct: 87  LGLQRGIGG-------LPNHSLSDPSAMIGRHGGGGPDLAPNGRGMNYGFQPPMDPVSRH 146

Query: 173 IRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILC 232
             E   LPPDA+ TLY+EGLPSD +RREVAHIFRPFVGY+E+RLV+KE+KHR GDPLILC
Sbjct: 147 GPEPALLPPDASPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHR-GDPLILC 206

Query: 233 FVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSG 279
           FVDFANPACAATA+SALQGYK+DE +PES++LRLQFSR+PGPRSG G
Sbjct: 207 FVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYPGPRSGGG 244

[Close]

BLAST of Cp4.1LG13g04190 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 8.5e-58
Identity = 124/233 (53.22%), Postives = 159/233 (68.24%), Query Frame = 0


Query: 55  PSSGLPAV---HEMHNYIAND-DHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTH 114
           P  G P +    +MH+Y++ D D G P +VKDT++IGSAYDRYLQS+Q     S E    
Sbjct: 199 PQEGTPYLIPSGDMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPF 258

Query: 115 GEMGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNR 174
             +GM R        +N MPGP + + ++     ++  D   NGR++ +     +DS  R
Sbjct: 259 NGVGMVRQGG-----SNMMPGPSMGE-LMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGR 318

Query: 175 PIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLIL 234
           P RE  PLPPD +NTLYVEGLPS+ SRREV+HIFRPFVGY+E+RLVT++SKHR GDP +L
Sbjct: 319 PGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVL 378

Query: 235 CFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 284
           CFVDF N ACAATA+SALQ Y+MDE +P+S  LRLQF R+PGPR G   GG+R
Sbjct: 379 CFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQ-RGGRR 421

[Close]

BLAST of Cp4.1LG13g04190 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 9.4e-49
Identity = 117/224 (52.23%), Postives = 139/224 (62.05%), Query Frame = 0


Query: 53  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 112
           E PSS +   H    Y  ++D   P    DT+TIGSAYDRYLQSVQ     SGE    G 
Sbjct: 28  EAPSSTMTIGHGGGYYPRDEDLDVP----DTRTIGSAYDRYLQSVQ-----SGE---GGS 87

Query: 113 MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI 172
           + MGR           +      D  ++ R   +  D   NG  I +    PV   N   
Sbjct: 88  VSMGRSGGGGGGGGGNVQ---TIDDFMLRRGGVLPLDHGPNGHTIGFDPPEPVGRRN--- 147

Query: 173 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 232
                LP DA+NTLYVEGLPS+ SRREVAHIFRPFVGY+E+RLVTK+SKHR GDP++LCF
Sbjct: 148 -----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCF 207

Query: 233 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSG 277
           VDF NPACAATA+SALQGY+MDE + +S +LRLQFSR PG R G
Sbjct: 208 VDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPG 228

[Close]

BLAST of Cp4.1LG13g04190 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.8e-27
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 173 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 232
           R   PLPPDA++TLY+EGLP++ +RREV+HIFRPFVG++E+RLV KES+H GGDP +LCF
Sbjct: 27  RPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCF 86

Query: 233 VDFANPACAATAMSALQGYKMDE 256
           VDF NPA A  A+ ALQG+  D+
Sbjct: 87  VDFDNPAQATIALEALQGHVTDD 109

[Close]

BLAST of Cp4.1LG13g04190 vs. NCBI nr
Match: XP_022938705.1 (RNA-binding protein 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 527 bits (1358), Expect = 1.73e-188
Identity = 260/262 (99.24%), Postives = 260/262 (99.24%), Query Frame = 0


Query: 22  MIIGIGSSLCFPRQACSNDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK 81
           MIIGIGSSLCFPRQAC NDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK
Sbjct: 1   MIIGIGSSLCFPRQACLNDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK 60

Query: 82  DTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMS 141
           DTQTIGSAYDRYLQSVQ SSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMS
Sbjct: 61  DTQTIGSAYDRYLQSVQPSSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMS 120

Query: 142 RPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA 201
           RPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA
Sbjct: 121 RPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA 180

Query: 202 HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 261
           HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN
Sbjct: 181 HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 240

Query: 262 YLRLQFSRHPGPRSGSGSGGKR 283
           YLRLQFSRHPGPRSGSGSGGKR
Sbjct: 241 YLRLQFSRHPGPRSGSGSGGKR 262

[Close]

BLAST of Cp4.1LG13g04190 vs. NCBI nr
Match: XP_022993915.1 (RNA-binding protein 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 527 bits (1357), Expect = 2.46e-188
Identity = 259/262 (98.85%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 22  MIIGIGSSLCFPRQACSNDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK 81
           MIIGIGSSLCFPRQAC NDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK
Sbjct: 1   MIIGIGSSLCFPRQACLNDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK 60

Query: 82  DTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMS 141
           DTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPI NRMPGPLLPDPVVMS
Sbjct: 61  DTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPIGNRMPGPLLPDPVVMS 120

Query: 142 RPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA 201
           RPLAVSPDLALNGRNIEY NHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA
Sbjct: 121 RPLAVSPDLALNGRNIEYGNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA 180

Query: 202 HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 261
           HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN
Sbjct: 181 HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 240

Query: 262 YLRLQFSRHPGPRSGSGSGGKR 283
           YLRLQFSRHPGPRSGSGSGGKR
Sbjct: 241 YLRLQFSRHPGPRSGSGSGGKR 262

[Close]

BLAST of Cp4.1LG13g04190 vs. NCBI nr
Match: XP_023551656.1 (RNA-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 473 bits (1216), Expect = 6.33e-167
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 53  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 112
           EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE
Sbjct: 27  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 113 MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI 172
           MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI
Sbjct: 87  MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI 146

Query: 173 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 232
           RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 206

Query: 233 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 283
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 257

[Close]

BLAST of Cp4.1LG13g04190 vs. NCBI nr
Match: XP_022938706.1 (RNA-binding protein 2-like isoform X2 [Cucurbita moschata] >KAG6578903.1 RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016425.1 RNA-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 470 bits (1209), Expect = 7.38e-166
Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 53  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 112
           EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQ SSFTSGEVPTHGE
Sbjct: 27  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQPSSFTSGEVPTHGE 86

Query: 113 MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI 172
           MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI
Sbjct: 87  MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI 146

Query: 173 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 232
           RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 206

Query: 233 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 283
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 257

[Close]

BLAST of Cp4.1LG13g04190 vs. NCBI nr
Match: XP_022993916.1 (RNA-binding protein 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 469 bits (1208), Expect = 1.05e-165
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 53  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 112
           EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE
Sbjct: 27  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 113 MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI 172
           MGMGRPLANRMPI NRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEY NHLPVDSTNRPI
Sbjct: 87  MGMGRPLANRMPIGNRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYGNHLPVDSTNRPI 146

Query: 173 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 232
           RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 206

Query: 233 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 283
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 257

[Close]

BLAST of Cp4.1LG13g04190 vs. ExPASy TrEMBL
Match: A0A6J1FKI7 (RNA-binding protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444852 PE=4 SV=1)

HSP 1 Score: 527 bits (1358), Expect = 8.39e-189
Identity = 260/262 (99.24%), Postives = 260/262 (99.24%), Query Frame = 0


Query: 22  MIIGIGSSLCFPRQACSNDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK 81
           MIIGIGSSLCFPRQAC NDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK
Sbjct: 1   MIIGIGSSLCFPRQACLNDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK 60

Query: 82  DTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMS 141
           DTQTIGSAYDRYLQSVQ SSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMS
Sbjct: 61  DTQTIGSAYDRYLQSVQPSSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMS 120

Query: 142 RPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA 201
           RPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA
Sbjct: 121 RPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA 180

Query: 202 HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 261
           HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN
Sbjct: 181 HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 240

Query: 262 YLRLQFSRHPGPRSGSGSGGKR 283
           YLRLQFSRHPGPRSGSGSGGKR
Sbjct: 241 YLRLQFSRHPGPRSGSGSGGKR 262

[Close]

BLAST of Cp4.1LG13g04190 vs. ExPASy TrEMBL
Match: A0A6J1JZU6 (RNA-binding protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489771 PE=4 SV=1)

HSP 1 Score: 527 bits (1357), Expect = 1.19e-188
Identity = 259/262 (98.85%), Postives = 259/262 (98.85%), Query Frame = 0


Query: 22  MIIGIGSSLCFPRQACSNDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK 81
           MIIGIGSSLCFPRQAC NDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK
Sbjct: 1   MIIGIGSSLCFPRQACLNDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVK 60

Query: 82  DTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMS 141
           DTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPI NRMPGPLLPDPVVMS
Sbjct: 61  DTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPIGNRMPGPLLPDPVVMS 120

Query: 142 RPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA 201
           RPLAVSPDLALNGRNIEY NHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA
Sbjct: 121 RPLAVSPDLALNGRNIEYGNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVA 180

Query: 202 HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 261
           HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN
Sbjct: 181 HIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESN 240

Query: 262 YLRLQFSRHPGPRSGSGSGGKR 283
           YLRLQFSRHPGPRSGSGSGGKR
Sbjct: 241 YLRLQFSRHPGPRSGSGSGGKR 262

[Close]

BLAST of Cp4.1LG13g04190 vs. ExPASy TrEMBL
Match: A0A6J1FDW9 (RNA-binding protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444852 PE=4 SV=1)

HSP 1 Score: 470 bits (1209), Expect = 3.57e-166
Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 53  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 112
           EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQ SSFTSGEVPTHGE
Sbjct: 27  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQPSSFTSGEVPTHGE 86

Query: 113 MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI 172
           MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI
Sbjct: 87  MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI 146

Query: 173 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 232
           RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 206

Query: 233 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 283
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 257

[Close]

BLAST of Cp4.1LG13g04190 vs. ExPASy TrEMBL
Match: A0A6J1JXN9 (RNA-binding protein 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489771 PE=4 SV=1)

HSP 1 Score: 469 bits (1208), Expect = 5.07e-166
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 53  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 112
           EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE
Sbjct: 27  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 113 MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI 172
           MGMGRPLANRMPI NRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEY NHLPVDSTNRPI
Sbjct: 87  MGMGRPLANRMPIGNRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYGNHLPVDSTNRPI 146

Query: 173 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 232
           RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 206

Query: 233 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 283
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 257

[Close]

BLAST of Cp4.1LG13g04190 vs. ExPASy TrEMBL
Match: A0A0A0KCN5 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338020 PE=4 SV=1)

HSP 1 Score: 437 bits (1124), Expect = 1.76e-149
Identity = 212/239 (88.70%), Postives = 225/239 (94.14%), Query Frame = 0


Query: 44  NMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFT 103
           N ALLSLS+E P+SGL   H+MHNY+ +DD GGPR+VKDTQTIGSAYDRYLQSVQLSSFT
Sbjct: 26  NYALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFT 85

Query: 104 SGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHL 163
           SGEVPTHGEMGMGRP+ANRMP+ NRMPGPLLPDP+VMSRP AVSPDLA NGRN+EY NHL
Sbjct: 86  SGEVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHL 145

Query: 164 PVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHR 223
           PVDS +RP RETVPLPPDA+NTLYVEGLP DSSRREVAHIFRPFVGYKELRLV+KESKHR
Sbjct: 146 PVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHR 205

Query: 224 GGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGK 282
           GGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGK
Sbjct: 206 GGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGK 264

[Close]

BLAST of Cp4.1LG13g04190 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 225.3 bits (573), Expect = 6.1e-59
Identity = 124/233 (53.22%), Postives = 159/233 (68.24%), Query Frame = 0


Query: 55  PSSGLPAV---HEMHNYIAND-DHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTH 114
           P  G P +    +MH+Y++ D D G P +VKDT++IGSAYDRYLQS+Q     S E    
Sbjct: 199 PQEGTPYLIPSGDMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPF 258

Query: 115 GEMGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNR 174
             +GM R        +N MPGP + + ++     ++  D   NGR++ +     +DS  R
Sbjct: 259 NGVGMVRQGG-----SNMMPGPSMGE-LMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGR 318

Query: 175 PIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLIL 234
           P RE  PLPPD +NTLYVEGLPS+ SRREV+HIFRPFVGY+E+RLVT++SKHR GDP +L
Sbjct: 319 PGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVL 378

Query: 235 CFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 284
           CFVDF N ACAATA+SALQ Y+MDE +P+S  LRLQF R+PGPR G   GG+R
Sbjct: 379 CFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQ-RGGRR 421

[Close]

BLAST of Cp4.1LG13g04190 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 224.9 bits (572), Expect = 7.9e-59
Identity = 121/221 (54.75%), Postives = 155/221 (70.14%), Query Frame = 0


Query: 64  EMHNYIAND-DHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANR 123
           +MH+Y++ D D G P +VKDT++IGSAYDRYLQS+Q     S E      +GM R     
Sbjct: 43  DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGG-- 102

Query: 124 MPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDA 183
              +N MPGP + + ++     ++  D   NGR++ +     +DS  RP RE  PLPPD 
Sbjct: 103 ---SNMMPGPSMGE-LMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDV 162

Query: 184 TNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAA 243
           +NTLYVEGLPS+ SRREV+HIFRPFVGY+E+RLVT++SKHR GDP +LCFVDF N ACAA
Sbjct: 163 SNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAA 222

Query: 244 TAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 284
           TA+SALQ Y+MDE +P+S  LRLQF R+PGPR G   GG+R
Sbjct: 223 TALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQ-RGGRR 253

[Close]

BLAST of Cp4.1LG13g04190 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 195.3 bits (495), Expect = 6.7e-50
Identity = 117/224 (52.23%), Postives = 139/224 (62.05%), Query Frame = 0


Query: 53  EPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 112
           E PSS +   H    Y  ++D   P    DT+TIGSAYDRYLQSVQ     SGE    G 
Sbjct: 28  EAPSSTMTIGHGGGYYPRDEDLDVP----DTRTIGSAYDRYLQSVQ-----SGE---GGS 87

Query: 113 MGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPI 172
           + MGR           +      D  ++ R   +  D   NG  I +    PV   N   
Sbjct: 88  VSMGRSGGGGGGGGGNVQ---TIDDFMLRRGGVLPLDHGPNGHTIGFDPPEPVGRRN--- 147

Query: 173 RETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCF 232
                LP DA+NTLYVEGLPS+ SRREVAHIFRPFVGY+E+RLVTK+SKHR GDP++LCF
Sbjct: 148 -----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCF 207

Query: 233 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSG 277
           VDF NPACAATA+SALQGY+MDE + +S +LRLQFSR PG R G
Sbjct: 208 VDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPG 228

[Close]

BLAST of Cp4.1LG13g04190 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 171.8 bits (434), Expect = 7.9e-43
Identity = 86/141 (60.99%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 136 DPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDS 195
           D  ++ R   +  D   NG  I +    PV   N        LP DA+NTLYVEGLPS+ 
Sbjct: 42  DDFMLRRGGVLPLDHGPNGHTIGFDPPEPVGRRN--------LPSDASNTLYVEGLPSNC 101

Query: 196 SRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDE 255
           SRREVAHIFRPFVGY+E+RLVTK+SKHR GDP++LCFVDF NPACAATA+SALQGY+MDE
Sbjct: 102 SRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDE 161

Query: 256 QDPESNYLRLQFSRHPGPRSG 277
            + +S +LRLQFSR PG R G
Sbjct: 162 NESDSKFLRLQFSRKPGSRPG 174

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g04190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
G7ID19	1.7e-69	60.00	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1	[more]
Q8H0P8	1.7e-66	60.35	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1	[more]
F4HWF9	8.5e-58	53.22	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
A1A6K6	9.4e-49	52.23	Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE...	[more]
Q6JB11	7.8e-27	65.06	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1	[more]

BLAST of Cp4.1LG13g04190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938705.1	1.73e-188	99.24	RNA-binding protein 2-like isoform X1 [Cucurbita moschata]	[more]
XP_022993915.1	2.46e-188	98.85	RNA-binding protein 2-like isoform X1 [Cucurbita maxima]	[more]
XP_023551656.1	6.33e-167	100.00	RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938706.1	7.38e-166	99.57	RNA-binding protein 2-like isoform X2 [Cucurbita moschata] >KAG6578903.1 RNA-bin...	[more]
XP_022993916.1	1.05e-165	99.13	RNA-binding protein 2-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG13g04190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FKI7	8.39e-189	99.24	RNA-binding protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444...	[more]
A0A6J1JZU6	1.19e-188	98.85	RNA-binding protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11148977...	[more]
A0A6J1FDW9	3.57e-166	99.57	RNA-binding protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444...	[more]
A0A6J1JXN9	5.07e-166	99.13	RNA-binding protein 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11148977...	[more]
A0A0A0KCN5	1.76e-149	88.70	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338020 PE=4 SV...	[more]

BLAST of Cp4.1LG13g04190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21320.1	6.1e-59	53.22	nucleotide binding;nucleic acid binding	[more]
AT1G21320.2	7.9e-59	54.75	nucleotide binding;nucleic acid binding	[more]
AT1G76940.1	6.7e-50	52.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76940.2	7.9e-43	60.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 185..261 e-value: 5.5E-5 score: 32.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 186..254 e-value: 6.1E-9 score: 35.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 184..270 score: 11.707565
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 180..271 e-value: 1.2E-18 score: 68.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..283
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 51..283
None	No IPR available	PANTHER	PTHR10501:SF53	NUCLEAR SPECKLE RNA-BINDING PROTEIN A-RELATED	coord: 51..283
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 184..266 e-value: 3.35001E-36 score: 122.378
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 152..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g04190.1	Cp4.1LG13g04190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding