Cp4.1LG13g04180 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g04180
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG13: 6335765 .. 6336052 (+)
RNA-Seq ExpressionCp4.1LG13g04180
SyntenyCp4.1LG13g04180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTATTCCATGGCTAATCTATACATTGTTATTTTGGTAGCATCTATTGCTGTAAGGCCACCGTCGGCAACCACCGCAAGCGCCGTCGTTGACCCTTCTCCTCTGCCGCCGCCAATCTACCATTCAGCTTCTGGGACACTATCATTTGGCCGTTCTATCAAAATTAGCCTTGAAGAGAAGGCAGACGAATCTGAACCACCACCACCATCATTCAAGGTTAGAAGGGGTCCCAGACGACCATGGCCTAAGAAACCTGTCGCCAAATCGCCACCGCCTCCATTTTAG

mRNA sequence

ATGGGGTATTCCATGGCTAATCTATACATTGTTATTTTGGTAGCATCTATTGCTGTAAGGCCACCGTCGGCAACCACCGCAAGCGCCGTCGTTGACCCTTCTCCTCTGCCGCCGCCAATCTACCATTCAGCTTCTGGGACACTATCATTTGGCCGTTCTATCAAAATTAGCCTTGAAGAGAAGGCAGACGAATCTGAACCACCACCACCATCATTCAAGGTTAGAAGGGGTCCCAGACGACCATGGCCTAAGAAACCTGTCGCCAAATCGCCACCGCCTCCATTTTAG

Coding sequence (CDS)

ATGGGGTATTCCATGGCTAATCTATACATTGTTATTTTGGTAGCATCTATTGCTGTAAGGCCACCGTCGGCAACCACCGCAAGCGCCGTCGTTGACCCTTCTCCTCTGCCGCCGCCAATCTACCATTCAGCTTCTGGGACACTATCATTTGGCCGTTCTATCAAAATTAGCCTTGAAGAGAAGGCAGACGAATCTGAACCACCACCACCATCATTCAAGGTTAGAAGGGGTCCCAGACGACCATGGCCTAAGAAACCTGTCGCCAAATCGCCACCGCCTCCATTTTAG

Protein sequence

MGYSMANLYIVILVASIAVRPPSATTASAVVDPSPLPPPIYHSASGTLSFGRSIKISLEEKADESEPPPPSFKVRRGPRRPWPKKPVAKSPPPPF
Homology
BLAST of Cp4.1LG13g04180 vs. NCBI nr
Match: KAG6578899.1 (hypothetical protein SDJN03_23347, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (403), Expect = 1.34e-48
Identity = 88/103 (85.44%), Postives = 90/103 (87.38%), Query Frame = 0

Query: 1   MGYSMANLYIVILVASIAVRPPSATTASAVVDPSPLPPPIYHSASGTLSFGRSIKISLEE 60
           MGYS ANL+IVILVASIA+RPPSATTASAVV PSPLPPPIYHSASGTLSFGR IKISLE 
Sbjct: 1   MGYSTANLFIVILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLEG 60

Query: 61  KA--------DESEPPPPSFKVRRGPRRPWPKKPVAKSPPPPF 95
           KA        DESEPPPPS KVRRGPRRPWPKKPVAKSPPPPF
Sbjct: 61  KAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF 103

BLAST of Cp4.1LG13g04180 vs. NCBI nr
Match: KAG6578898.1 (hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 3.65e-24
Identity = 59/96 (61.46%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 1  MGYSMANLYIVILVASIAVRPPSATTASAVVDPSPLPPPIYHSASGTLSFGRSIKISLEE 60
          MGYS ANL   ILVASIA+R P    ASA+V PSPLPPP  HS SG L F R IK+SL  
Sbjct: 1  MGYSTANLMFGILVASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLTV 60

Query: 61 KAD-ESEPPPPSFKVRRGPRRPWPKKPVAKSPPPPF 95
          KA  E E   PS K  +G R+PWPK+PV K+PPPPF
Sbjct: 61 KASGEDEAEAPSSKDEKGRRKPWPKQPVPKAPPPPF 96

BLAST of Cp4.1LG13g04180 vs. NCBI nr
Match: KAA0054914.1 (hypothetical protein E6C27_scaffold43052G00420 [Cucumis melo var. makuwa] >TYK22702.1 hypothetical protein E5676_scaffold1163G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.60e-10
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 0

Query: 1  MGYSMANLYIV-ILVASIAVRPPSATTASAVVDPSPLP---PPIYHSASGTLSFGRSIKI 60
          MG S AN+ I+ I VASIA+R PS TTA A+ DP PL     PIY++          +K+
Sbjct: 1  MGCSTANILILTIFVASIALRLPSETTARAIADPYPLSWPWLPIYNTL---------MKV 60

Query: 61 SLEEKA--------DESEPPPPSFKVRRGPRRPWPKKPVAKSPPPPF 95
           L ++A        DES+PP    K  +  R+PWPK PV+KSPPPPF
Sbjct: 61 RLNDEAGSGEENGDDESDPP---SKEAKSSRKPWPKNPVSKSPPPPF 95

BLAST of Cp4.1LG13g04180 vs. NCBI nr
Match: KAE8646678.1 (hypothetical protein Csa_023589, partial [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 9.95e-09
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 0

Query: 16 SIAVRPPSATTASAVVDPSPLPPPIYHSASGTLSFGRSIKISLEEKA--------DESEP 75
          SIA+R P+ TTA A+ DP PL  P        L +   +K+ L ++A        DES+P
Sbjct: 1  SIALRLPTETTARAIADPYPLSWPRL------LIYNTVMKVRLNDEAGSGEGSGDDESDP 60

Query: 76 PPPSFKVRRGPRRPWPKKPVAKSPPPPF 95
          P    K  +G R+PWPK PV+KSPPPPF
Sbjct: 61 P---LKEEKGSRKPWPKNPVSKSPPPPF 79

BLAST of Cp4.1LG13g04180 vs. NCBI nr
Match: KAE8637368.1 (hypothetical protein CSA_004461, partial [Cucumis sativus])

HSP 1 Score: 51.2 bits (121), Expect = 6.08e-06
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 0

Query: 1  MGYSMANLYIV-ILVASIAVRPPSATTASAVVDPSPLPPPIYHSASGTLSFGRSIKISLE 60
          MG S AN+ I+ I VASIA+R P+ TTA A+ DP PL  P        L +   +K+ L 
Sbjct: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRL------LIYNTVMKVRLN 60

Query: 61 EKA--------DESEPPPPSFKVRRGPRRPWPKKP 86
          ++A        DES+PP    K  +G R+PWPK P
Sbjct: 61 DEAGSGEGSGDDESDPP---LKEEKGSRKPWPKNP 86

BLAST of Cp4.1LG13g04180 vs. ExPASy TrEMBL
Match: A0A0A0K9K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058720 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.38e-12
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 0

Query: 1  MGYSMANLYIV-ILVASIAVRPPSATTASAVVDPSPLPPPIYHSASGTLSFGRSIKISLE 60
          MG S AN+ I+ I VASIA+R P+ TTA A+ DP PL  P        L +   +K+ L 
Sbjct: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRL------LIYNTVMKVRLN 60

Query: 61 EKA--------DESEPPPPSFKVRRGPRRPWPKKPVAKSPPPPF 95
          ++A        DES+PP    K  +G R+PWPK PV+KSPPPPF
Sbjct: 61 DEAGSGEGSGDDESDPP---LKEEKGSRKPWPKNPVSKSPPPPF 95

BLAST of Cp4.1LG13g04180 vs. ExPASy TrEMBL
Match: A0A5A7UIB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00190 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.73e-11
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 0

Query: 1  MGYSMANLYIV-ILVASIAVRPPSATTASAVVDPSPLP---PPIYHSASGTLSFGRSIKI 60
          MG S AN+ I+ I VASIA+R PS TTA A+ DP PL     PIY++          +K+
Sbjct: 1  MGCSTANILILTIFVASIALRLPSETTARAIADPYPLSWPWLPIYNTL---------MKV 60

Query: 61 SLEEKA--------DESEPPPPSFKVRRGPRRPWPKKPVAKSPPPPF 95
           L ++A        DES+PP    K  +  R+PWPK PV+KSPPPPF
Sbjct: 61 RLNDEAGSGEENGDDESDPP---SKEAKSSRKPWPKNPVSKSPPPPF 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6578899.11.34e-4885.44hypothetical protein SDJN03_23347, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6578898.13.65e-2461.46hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0054914.11.60e-1045.79hypothetical protein E6C27_scaffold43052G00420 [Cucumis melo var. makuwa] >TYK22... [more]
KAE8646678.19.95e-0944.32hypothetical protein Csa_023589, partial [Cucumis sativus][more]
KAE8637368.16.08e-0642.11hypothetical protein CSA_004461, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0K9K22.38e-1246.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058720 PE=4 SV=1[more]
A0A5A7UIB87.73e-1145.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g04180.1Cp4.1LG13g04180.1mRNA