Cp4.1LG13g03560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g03560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	F-box protein SKIP28
Location	Cp4.1LG13: 3612024 .. 3615308 (-)
RNA-Seq Expression	Cp4.1LG13g03560
Synteny	Cp4.1LG13g03560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGAACAAGAAATTCCCAAATCAGGTGGCCGTCTGCGGCAGTTCATCTCCCGGCGTTCGAATCGCGGCAGGGCCACCGCACGAGGCCTTATTTCTTGTACTGAGTTATCTTCCTCTATTTGAGATTCTTTCCATGGGCGCAGTCTGCGTATCGCTAAGAGACGCAGTGGAACACGATGTGTTGCCGTGGCTTCACCTCGCTGTCGATCGCCCCTTGAGCTCCCGGCTAAACGATTACATTCTGGAGCGAATCGCCCGAAAGGCCGATGGCCGCCTTCGAACCTTGGCTTTGATCAACTGCTTCAAGATTTCAGATTCTGCACTTCACGAAGTCGTTGAGAACAATCCCCTTCTCACCAAGGTATTTACATCTTCCTTTGAATGCTTGTGTTGATTGCTTAATCTAATGAATAATTTCTCCAAATTTGAGAGATGTATTCCTCCCTGTGACTCTCAATAATCCCCTCTCGAACAAAGTACATCATAGAACCTCCCTTGAATCCTATGCAGCCCTCGAACAACCTCTCTTTAATCGGGGTTGGACTCCTTCTCTGGAGTCCTTGAACAATGTACACCTATGTTCAACACTTTAGTTACTTTTGACTACATCTTCGATGCTCACAATTCTTTGTTCAACACTTTAGTCACTTTGTTTGCTTCGCACCTGACTTATGATTTATCCTTAAGTACTGACTACACATTCAATGCTCACAATTCTTTGTTCGACATTTGAGTATTCTATTGACATGACTAAGTTTAGGGTATGACTCTAGTACCATGTTATACGAGACCTTTTGGAGAAACCCAAAGCAAAACTATGAAAGTTTAGGTTCAAATTAGACAATATCAATACTGTTGTGGGGTGCATCAAATTACAACCTTAAAACAGAACATCTCAAGTATTTTCCTTTTTGATTCAGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGGTAAGTAGCTCTGCTGCTGGGTTTGTTTGTGAAGTTTGTATTGAAACTTAGCATACTTAAATTGTGATCCAATATGTAGATGAGAGTAAAACAAATTATATGAAAATATGAAATACAAATATGGTATCCTCAACCATGTCAATTCTTTTGGAGTTTCTGTTGAAATAAAATTCATTCCGGTACCAATTTGTAGAAAATAACAATCCGCTTAGATACTAATTTGTAGAAATCAATGCTCGCTCTCAAACTAACTTGTTAAAATAACACTCACAATTTATAGAAATAAATGCTCGCTTTGAAACTAACTTGTTAAAATAACACTCACGAGGTTATGAAGGAGATGTCGAGGAGAGAGTAGAAGACAAAAGAAATTCTGAAAAACCCTTTTCTATTACCGTGTACTTTTAACTCTTACTCTGCTCTTGCTCTCTACCATTCCAATGAGAAACAAATAGTATTTATAATTTTTCTAAAACAAAAAATGGGCATTAGAATCACAGGTTTTCTAACCCATAAAACCACTACCGCTTACAAATAAATGTTTTGACTTTTGACTCAATTTTAAAACTCACATGAACTAAAAATANGTTGTGAAGGAGATGTCGAGAGGGGAGAGACAAGAAGACAAAAGAAATTCTGAAAAACCCTTTTCTATGACCGTGTACTCTTAACTCTTACTCTGCTCTTGCTCTCTACCATTCAAATGAGAAACAAATAGAATTCATAATTTTTCTAAAACAAAAAATGGGCATTAGAATCACACGTTTACTGACCCATAAAACCACTACTGCTTACCAATAAATGTTTTGACTTTTGACTCAATTTTAAAACTCACATTAACTAAAAATAGAAACTACCTCCTTCCTTCTTTTCATTTAATTTTACTTCCAACAAAACTCCCACATAAACTTAAATACTTCTATCATCTGTCGTGCCAATCATCTTCTTGTATTTGTCGAAAAGTACTTTCGGTTTTGCTTCGCACCTGACTTATGATTTATCCTTAAGTACTGACTACACATTCAATGCTCACAATTCTTTGTTCGACATTTGAGTATTCTATTGACATGACTAAGTTTAGGGTATGACTCTAGTACCATGTTATACGAGACCTTTTGGAGAAACCCAAAGCAAAACTATGAAAGTTTAGGTTCAAATTAGACAATATCAATACTGTTGTGGGGTGCATCAAATTACAACCTTAAAACAGAACATCTCAAGTATTTTCCTTTTTGATTCAGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGGTAAGTAGCTCTGCTGCTGGGTTTGTTTGTGAAGTTTGTATTGAAACTTAG

mRNA sequence

ATGTCTGAGAACAAGAAATTCCCAAATCAGGTGGCCGTCTGCGGCAGTTCATCTCCCGGCGTTCGAATCGCGGCAGGGCCACCGCACGAGGCCTTATTTCTTGTACTGAGTTATCTTCCTCTATTTGAGATTCTTTCCATGGGCGCAGTCTGCGTATCGCTAAGAGACGCAGTGGAACACGATGTGTTGCCGTGGCTTCACCTCGCTGTCGATCGCCCCTTGAGCTCCCGGCTAAACGATTACATTCTGGAGCGAATCGCCCGAAAGGCCGATGGCCGCCTTCGAACCTTGGCTTTGATCAACTGCTTCAAGATTTCAGATTCTGCACTTCACGAAGTCGTTGAGAACAATCCCCTTCTCACCAAGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGGTAAGTAGCTCTGCTGCTGGGTTTGTTTGTGAAGTTTGTATTGAAACTTAG

Coding sequence (CDS)

ATGTCTGAGAACAAGAAATTCCCAAATCAGGTGGCCGTCTGCGGCAGTTCATCTCCCGGCGTTCGAATCGCGGCAGGGCCACCGCACGAGGCCTTATTTCTTGTACTGAGTTATCTTCCTCTATTTGAGATTCTTTCCATGGGCGCAGTCTGCGTATCGCTAAGAGACGCAGTGGAACACGATGTGTTGCCGTGGCTTCACCTCGCTGTCGATCGCCCCTTGAGCTCCCGGCTAAACGATTACATTCTGGAGCGAATCGCCCGAAAGGCCGATGGCCGCCTTCGAACCTTGGCTTTGATCAACTGCTTCAAGATTTCAGATTCTGCACTTCACGAAGTCGTTGAGAACAATCCCCTTCTCACCAAGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGGTAAGTAGCTCTGCTGCTGGGTTTGTTTGTGAAGTTTGTATTGAAACTTAG

Protein sequence

MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVVSSSAAGFVCEVCIET

Homology

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BLAST of Cp4.1LG13g03560 vs. ExPASy Swiss-Prot
Match: Q9ZU90 (F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.3e-56
Identity = 116/273 (42.49%), Postives = 154/273 (56.41%), Query Frame = 0


Query: 29  HEALFLVLSYL-PLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIA 88
           HE L +VL YL  LFE+LSM  V  SLRDA+  +   W  L ++ PLSSRL D IL   +
Sbjct: 17  HEVLLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFS 76

Query: 89  RKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLSQHS 148
            K+ G+L+TL L  C  +++  L  VV+ NPL+TK+ VPGC+ LTPEG++  VE+LS+++
Sbjct: 77  SKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLSKNN 136

Query: 149 HNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMA 208
           H L +L I G+     +HL  L  +L   G+                             
Sbjct: 137 HKLETLHINGVNGFTKQHLSALYTYLSSEGT----------------------------- 196

Query: 209 MIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETE- 268
            ID+E+CPKC E+  +  CSRE C  KQ      +CRGC  C+PRC EC  C+ G +TE 
Sbjct: 197 -IDLEVCPKCDEVRMIPSCSRESCNQKQR-----KCRGCWLCIPRCAECAVCLVGSDTES 254

Query: 269 -EAVCAG--ILCTSCWLQLPKCNHCNRPYCTRH 297
            EA C    +LC  CWL LPKC  CN+PYCT H
Sbjct: 257 QEAACGNDDVLCLECWLVLPKCRFCNKPYCTNH 254

[Close]

BLAST of Cp4.1LG13g03560 vs. ExPASy Swiss-Prot
Match: Q9LU91 (F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.7e-34
Identity = 88/257 (34.24%), Postives = 135/257 (52.53%), Query Frame = 0


Query: 29  HEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIAR 88
           H A+   L +L   ++LS+  VC SL   V  D L W H+ + RPL+ ++ +  L  +  
Sbjct: 201 HPAIGFCLYHLRGKDLLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEALLHLTE 260

Query: 89  KADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETL-SQHS 148
           +A G ++ L +++C +I+D  L  VV  N  + K+ VPGCT +T +G++  +  L S   
Sbjct: 261 RAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDLKSAGK 320

Query: 149 HNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMA 208
             +  L + G++ +  +H + L    L N   + +Q  Q+ R YH+  EA     ++   
Sbjct: 321 LQVKHLQLRGLFGVTKDHYDELID--LLNIDNKVKQTIQKPRFYHRG-EACVSCDDD--R 380

Query: 209 MIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETEE 268
            +D+EMCPKCQ    VYDC  E CK K++     ECR CS C+ RC  CG C+   E EE
Sbjct: 381 ALDIEMCPKCQNFKLVYDCPAEDCKGKKK--GSEECRACSLCIQRCYHCGRCIIDTEYEE 440

Query: 269 AVCAGILCTSCWLQLPK 285
             C  +LC  C    PK
Sbjct: 441 MFCLELLCAVCSKPTPK 450

[Close]

BLAST of Cp4.1LG13g03560 vs. ExPASy Swiss-Prot
Match: Q9LK24 (F-box protein At3g27290 OS=Arabidopsis thaliana OX=3702 GN=At3g27290 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.2e-28
Identity = 89/256 (34.77%), Postives = 133/256 (51.95%), Query Frame = 0


Query: 26  GPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAV-DRPLSSRLNDYILE 85
           G  H+A  LVL YL L EIL++  VC SLRD+V  +   W  + + D  L  R+ D  L 
Sbjct: 125 GEAHDAFELVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLL 184

Query: 86  RIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETL- 145
           ++ R+A G +R L L  C  I+D  L +V+ +NP LTKL V GC  L+  G++  +  L 
Sbjct: 185 KLTRRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDLK 244

Query: 146 SQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRN 205
           S +   + SL+ GG      E  + L  +LL  G  +   Q++++R Y      + L   
Sbjct: 245 SSNRLGVKSLITGGALYFTKEQFKEL--NLLLGGDAKVGLQERKKRFYTSCRSEFYL--- 304

Query: 206 EYMAMIDVEMCPKCQEIGKVYDCSRERCKIK-QEQNSGAECRGCSGCVPRCEECGGCVDG 265
           E   + D+E+CP C++   V+DC  + C +K Q   S + CR C  C+ RC ECG C++ 
Sbjct: 305 EDDRVTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECGSCLN- 364

Query: 266 DETEEAVCAGILCTSC 279
           D   +  C    C  C
Sbjct: 365 DCENKPFCFAFSCVVC 374

[Close]

BLAST of Cp4.1LG13g03560 vs. NCBI nr
Match: XP_023551551.1 (F-box protein SKIP28-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 620 bits (1598), Expect = 1.34e-220
Identity = 300/301 (99.67%), Postives = 301/301 (100.00%), Query Frame = 0


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH
Sbjct: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL
Sbjct: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ
Sbjct: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180

Query: 181 QQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSG 240
           QQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSG
Sbjct: 181 QQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSG 240

Query: 241 AECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNV 300
           AECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNV
Sbjct: 241 AECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNV 300

[Close]

BLAST of Cp4.1LG13g03560 vs. NCBI nr
Match: KAG6579265.1 (F-box protein SKIP28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 587 bits (1512), Expect = 1.69e-207
Identity = 286/302 (94.70%), Postives = 295/302 (97.68%), Query Frame = 0


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFE+LSMGAVCVSLRDAVEH
Sbjct: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVEH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLHL VDRPLSSRLNDYIL RIARKADGRLRTLALINCFKISDSALH+VVENNPLL
Sbjct: 61  DVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHQVVENNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKN S+Q
Sbjct: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNRSEQ 180

Query: 181 QQQQQQQRRLYH-KYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           QQQQQQQRRLYH ++IEA KLLRNEY+AMIDVEMCPKC+EIG+VYDCSRERCKIKQEQ S
Sbjct: 181 QQQQQQQRRLYHHEHIEASKLLRNEYVAMIDVEMCPKCEEIGRVYDCSRERCKIKQEQKS 240

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 300
           GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRH QN
Sbjct: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHCQN 300

[Close]

BLAST of Cp4.1LG13g03560 vs. NCBI nr
Match: XP_022939676.1 (F-box protein SKIP28 [Cucurbita moschata])

HSP 1 Score: 580 bits (1496), Expect = 4.42e-205
Identity = 282/300 (94.00%), Postives = 290/300 (96.67%), Query Frame = 0


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSEN KFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFE+LSMGAVCVSLRDAV H
Sbjct: 1   MSENNKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVAH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLHL VDRPLSSRLNDYIL RIARKADGRLRTLALINCFKISDSALHEVVENNPLL
Sbjct: 61  DVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKN SQQ
Sbjct: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNRSQQ 180

Query: 181 QQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSG 240
           QQQQQQ+R  +H++IEA KLLRN+Y+AMIDVEMCPKCQEIG+VYDCSRERCKIKQEQ SG
Sbjct: 181 QQQQQQRRLYHHEHIEASKLLRNKYVAMIDVEMCPKCQEIGRVYDCSRERCKIKQEQKSG 240

Query: 241 AECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNV 300
           AECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRH QNV
Sbjct: 241 AECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHCQNV 300

[Close]

BLAST of Cp4.1LG13g03560 vs. NCBI nr
Match: XP_022973574.1 (F-box protein SKIP28 [Cucurbita maxima])

HSP 1 Score: 576 bits (1485), Expect = 2.16e-203
Identity = 282/301 (93.69%), Postives = 290/301 (96.35%), Query Frame = 0


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSENKKFPNQVAVCGSSSPGV IAAGPPHEALFLVLSYLPLFE+LSMGAVCVSLRDAVEH
Sbjct: 1   MSENKKFPNQVAVCGSSSPGVGIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVEH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLHL VDRPLSSRLNDYIL RIARKADGRLRTLALINCFKISDSALHEVV+NNPLL
Sbjct: 61  DVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHEVVQNNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKY+LLKN SQQ
Sbjct: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYYLLKNRSQQ 180

Query: 181 QQQQQQQ-RRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           QQQQQQQ RRLYHK IEA KLLRNE +AMIDVEMCPKCQE+G+VYDCSRERCKIKQEQ  
Sbjct: 181 QQQQQQQQRRLYHKDIEASKLLRNECVAMIDVEMCPKCQEMGRVYDCSRERCKIKQEQKF 240

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 300
           GAECRGCSGCVPRCEECGGCVDGDETEEAVC G+LCTSCWLQLPKCNHCN+PYCTRHRQN
Sbjct: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCVGVLCTSCWLQLPKCNHCNKPYCTRHRQN 300

[Close]

BLAST of Cp4.1LG13g03560 vs. NCBI nr
Match: KAG7016781.1 (F-box protein SKIP28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 547 bits (1410), Expect = 3.52e-192
Identity = 273/302 (90.40%), Postives = 281/302 (93.05%), Query Frame = 0


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFE+LSMGAVCVSLRDAVEH
Sbjct: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVEH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLHL VDRPLSSRLNDYIL RIARKADGRLRTLALINCFKISDSALH+VVENNPLL
Sbjct: 61  DVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHQVVENNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TK            GVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKN  QQ
Sbjct: 121 TK------------GVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNRLQQ 180

Query: 181 QQQQQQQRRLYH-KYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           QQQQQQ+ RLYH ++IEA KLLRNEY+AMIDVEMCPKCQEIG+VYDCSRERCKIKQEQ S
Sbjct: 181 QQQQQQKCRLYHHEHIEASKLLRNEYVAMIDVEMCPKCQEIGRVYDCSRERCKIKQEQKS 240

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 300
           GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRH QN
Sbjct: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHCQN 290

[Close]

BLAST of Cp4.1LG13g03560 vs. ExPASy TrEMBL
Match: A0A6J1FGL5 (F-box protein SKIP28 OS=Cucurbita moschata OX=3662 GN=LOC111445493 PE=4 SV=1)

HSP 1 Score: 580 bits (1496), Expect = 2.14e-205
Identity = 282/300 (94.00%), Postives = 290/300 (96.67%), Query Frame = 0


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSEN KFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFE+LSMGAVCVSLRDAV H
Sbjct: 1   MSENNKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVAH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLHL VDRPLSSRLNDYIL RIARKADGRLRTLALINCFKISDSALHEVVENNPLL
Sbjct: 61  DVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKN SQQ
Sbjct: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNRSQQ 180

Query: 181 QQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSG 240
           QQQQQQ+R  +H++IEA KLLRN+Y+AMIDVEMCPKCQEIG+VYDCSRERCKIKQEQ SG
Sbjct: 181 QQQQQQRRLYHHEHIEASKLLRNKYVAMIDVEMCPKCQEIGRVYDCSRERCKIKQEQKSG 240

Query: 241 AECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNV 300
           AECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRH QNV
Sbjct: 241 AECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHCQNV 300

[Close]

BLAST of Cp4.1LG13g03560 vs. ExPASy TrEMBL
Match: A0A6J1IEZ1 (F-box protein SKIP28 OS=Cucurbita maxima OX=3661 GN=LOC111472110 PE=4 SV=1)

HSP 1 Score: 576 bits (1485), Expect = 1.05e-203
Identity = 282/301 (93.69%), Postives = 290/301 (96.35%), Query Frame = 0


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSENKKFPNQVAVCGSSSPGV IAAGPPHEALFLVLSYLPLFE+LSMGAVCVSLRDAVEH
Sbjct: 1   MSENKKFPNQVAVCGSSSPGVGIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVEH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLHL VDRPLSSRLNDYIL RIARKADGRLRTLALINCFKISDSALHEVV+NNPLL
Sbjct: 61  DVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHEVVQNNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKY+LLKN SQQ
Sbjct: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYYLLKNRSQQ 180

Query: 181 QQQQQQQ-RRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           QQQQQQQ RRLYHK IEA KLLRNE +AMIDVEMCPKCQE+G+VYDCSRERCKIKQEQ  
Sbjct: 181 QQQQQQQQRRLYHKDIEASKLLRNECVAMIDVEMCPKCQEMGRVYDCSRERCKIKQEQKF 240

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 300
           GAECRGCSGCVPRCEECGGCVDGDETEEAVC G+LCTSCWLQLPKCNHCN+PYCTRHRQN
Sbjct: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCVGVLCTSCWLQLPKCNHCNKPYCTRHRQN 300

[Close]

BLAST of Cp4.1LG13g03560 vs. ExPASy TrEMBL
Match: A0A5A7TYB5 (F-box protein SKIP28 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00470 PE=4 SV=1)

HSP 1 Score: 441 bits (1135), Expect = 1.05e-150
Identity = 216/301 (71.76%), Postives = 248/301 (82.39%), Query Frame = 0


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSEN++ PN  AV           AGPPHEALF V+SYL LFE+LSM AVCVSLRDAVEH
Sbjct: 1   MSENQEPPNPAAVA---------EAGPPHEALFHVVSYLSLFELLSMSAVCVSLRDAVEH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLH+ VD  LSSRL+DY L RIARKA GRLRTLALI+CFKISDS LHEVVENNPLL
Sbjct: 61  DVLPWLHIVVDGRLSSRLSDYTLGRIARKAGGRLRTLALIDCFKISDSGLHEVVENNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTP GV+RAV+T SQHSHNL +LMIGGIYNIEN HLEVL+ HLL+N SQ 
Sbjct: 121 TKLYVPGCTSLTPAGVVRAVKTSSQHSHNLKNLMIGGIYNIENHHLEVLRSHLLENRSQN 180

Query: 181 QQQQQQQ-RRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           +QQ+ +Q   LYH++++   LL N+++ +IDV++CPKC +I  VYDCSRERCKIKQ +N 
Sbjct: 181 KQQEWRQVHHLYHEHVDRPNLLSNDFLPLIDVQICPKCYDIRNVYDCSRERCKIKQGENL 240

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 300
            A+CRGC  C+PRCEECGGCVD DE EEA+C GI+C+SCWLQLPKCNHCNRPYC RHR N
Sbjct: 241 LADCRGCISCMPRCEECGGCVDVDEIEEAICPGIVCSSCWLQLPKCNHCNRPYCKRHRDN 292

[Close]

BLAST of Cp4.1LG13g03560 vs. ExPASy TrEMBL
Match: A0A1S4E4Z1 (F-box protein SKIP28 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504545 PE=4 SV=1)

HSP 1 Score: 441 bits (1134), Expect = 2.37e-150
Identity = 215/301 (71.43%), Postives = 248/301 (82.39%), Query Frame = 0


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSEN++ PN  AV           AGPPHEALF V+SYL LFE+LSM AVCVSLRDAVEH
Sbjct: 1   MSENQEPPNPAAVA---------EAGPPHEALFHVVSYLSLFELLSMSAVCVSLRDAVEH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLH+ VD  LSSRL+DY L RIARKA GRLRTLALI+CFKISDS LHEVVENNPLL
Sbjct: 61  DVLPWLHIVVDGRLSSRLSDYTLGRIARKAGGRLRTLALIDCFKISDSGLHEVVENNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTP GV+RAV+T SQHSHNL +LMIGGIYNIEN HLEVL+ HLL+N SQ 
Sbjct: 121 TKLYVPGCTSLTPAGVVRAVKTSSQHSHNLKNLMIGGIYNIENHHLEVLRSHLLENRSQN 180

Query: 181 QQQQQQQ-RRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           +QQ+ +Q   LYH++++   LL N+++ +IDV++CPKC +I  VYDCSRERCKIKQ +N 
Sbjct: 181 KQQEWRQVHHLYHEHVDRPNLLSNDFLPLIDVQICPKCYDIRNVYDCSRERCKIKQGENL 240

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 300
            A+CRGC  C+PRCEECGGCVD DE EEA+C GI+C+SCWLQLPKCNHCNRPYC RHR N
Sbjct: 241 LADCRGCISCMPRCEECGGCVDVDEIEEAICPGIVCSSCWLQLPKCNHCNRPYCKRHRDN 292

[Close]

BLAST of Cp4.1LG13g03560 vs. ExPASy TrEMBL
Match: A0A1S3CSR5 (F-box protein SKIP28 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504545 PE=4 SV=1)

HSP 1 Score: 440 bits (1131), Expect = 3.81e-150
Identity = 215/300 (71.67%), Postives = 247/300 (82.33%), Query Frame = 0


Query: 1   MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEH 60
           MSEN++ PN  AV           AGPPHEALF V+SYL LFE+LSM AVCVSLRDAVEH
Sbjct: 1   MSENQEPPNPAAVA---------EAGPPHEALFHVVSYLSLFELLSMSAVCVSLRDAVEH 60

Query: 61  DVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLL 120
           DVLPWLH+ VD  LSSRL+DY L RIARKA GRLRTLALI+CFKISDS LHEVVENNPLL
Sbjct: 61  DVLPWLHIVVDGRLSSRLSDYTLGRIARKAGGRLRTLALIDCFKISDSGLHEVVENNPLL 120

Query: 121 TKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQ 180
           TKLYVPGCTSLTP GV+RAV+T SQHSHNL +LMIGGIYNIEN HLEVL+ HLL+N SQ 
Sbjct: 121 TKLYVPGCTSLTPAGVVRAVKTSSQHSHNLKNLMIGGIYNIENHHLEVLRSHLLENRSQN 180

Query: 181 QQQQQQQ-RRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNS 240
           +QQ+ +Q   LYH++++   LL N+++ +IDV++CPKC +I  VYDCSRERCKIKQ +N 
Sbjct: 181 KQQEWRQVHHLYHEHVDRPNLLSNDFLPLIDVQICPKCYDIRNVYDCSRERCKIKQGENL 240

Query: 241 GAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQN 299
            A+CRGC  C+PRCEECGGCVD DE EEA+C GI+C+SCWLQLPKCNHCNRPYC RHR N
Sbjct: 241 LADCRGCISCMPRCEECGGCVDVDEIEEAICPGIVCSSCWLQLPKCNHCNRPYCKRHRDN 291

[Close]

BLAST of Cp4.1LG13g03560 vs. TAIR 10
Match: AT2G01620.1 (RNI-like superfamily protein )

HSP 1 Score: 219.9 bits (559), Expect = 4.4e-57
Identity = 116/273 (42.49%), Postives = 154/273 (56.41%), Query Frame = 0


Query: 29  HEALFLVLSYL-PLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIA 88
           HE L +VL YL  LFE+LSM  V  SLRDA+  +   W  L ++ PLSSRL D IL   +
Sbjct: 17  HEVLLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFS 76

Query: 89  RKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLSQHS 148
            K+ G+L+TL L  C  +++  L  VV+ NPL+TK+ VPGC+ LTPEG++  VE+LS+++
Sbjct: 77  SKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLSKNN 136

Query: 149 HNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMA 208
           H L +L I G+     +HL  L  +L   G+                             
Sbjct: 137 HKLETLHINGVNGFTKQHLSALYTYLSSEGT----------------------------- 196

Query: 209 MIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETE- 268
            ID+E+CPKC E+  +  CSRE C  KQ      +CRGC  C+PRC EC  C+ G +TE 
Sbjct: 197 -IDLEVCPKCDEVRMIPSCSRESCNQKQR-----KCRGCWLCIPRCAECAVCLVGSDTES 254

Query: 269 -EAVCAG--ILCTSCWLQLPKCNHCNRPYCTRH 297
            EA C    +LC  CWL LPKC  CN+PYCT H
Sbjct: 257 QEAACGNDDVLCLECWLVLPKCRFCNKPYCTNH 254

[Close]

BLAST of Cp4.1LG13g03560 vs. TAIR 10
Match: AT3G26000.1 (Ribonuclease inhibitor )

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-35
Identity = 88/257 (34.24%), Postives = 135/257 (52.53%), Query Frame = 0


Query: 29  HEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIAR 88
           H A+   L +L   ++LS+  VC SL   V  D L W H+ + RPL+ ++ +  L  +  
Sbjct: 201 HPAIGFCLYHLRGKDLLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEALLHLTE 260

Query: 89  KADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETL-SQHS 148
           +A G ++ L +++C +I+D  L  VV  N  + K+ VPGCT +T +G++  +  L S   
Sbjct: 261 RAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDLKSAGK 320

Query: 149 HNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMA 208
             +  L + G++ +  +H + L    L N   + +Q  Q+ R YH+  EA     ++   
Sbjct: 321 LQVKHLQLRGLFGVTKDHYDELID--LLNIDNKVKQTIQKPRFYHRG-EACVSCDDD--R 380

Query: 209 MIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETEE 268
            +D+EMCPKCQ    VYDC  E CK K++     ECR CS C+ RC  CG C+   E EE
Sbjct: 381 ALDIEMCPKCQNFKLVYDCPAEDCKGKKK--GSEECRACSLCIQRCYHCGRCIIDTEYEE 440

Query: 269 AVCAGILCTSCWLQLPK 285
             C  +LC  C    PK
Sbjct: 441 MFCLELLCAVCSKPTPK 450

[Close]

BLAST of Cp4.1LG13g03560 vs. TAIR 10
Match: AT3G27290.1 (RNI-like superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 3.0e-29
Identity = 89/256 (34.77%), Postives = 133/256 (51.95%), Query Frame = 0


Query: 26  GPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAV-DRPLSSRLNDYILE 85
           G  H+A  LVL YL L EIL++  VC SLRD+V  +   W  + + D  L  R+ D  L 
Sbjct: 125 GEAHDAFELVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLL 184

Query: 86  RIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETL- 145
           ++ R+A G +R L L  C  I+D  L +V+ +NP LTKL V GC  L+  G++  +  L 
Sbjct: 185 KLTRRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDLK 244

Query: 146 SQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRN 205
           S +   + SL+ GG      E  + L  +LL  G  +   Q++++R Y      + L   
Sbjct: 245 SSNRLGVKSLITGGALYFTKEQFKEL--NLLLGGDAKVGLQERKKRFYTSCRSEFYL--- 304

Query: 206 EYMAMIDVEMCPKCQEIGKVYDCSRERCKIK-QEQNSGAECRGCSGCVPRCEECGGCVDG 265
           E   + D+E+CP C++   V+DC  + C +K Q   S + CR C  C+ RC ECG C++ 
Sbjct: 305 EDDRVTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECGSCLN- 364

Query: 266 DETEEAVCAGILCTSC 279
           D   +  C    C  C
Sbjct: 365 DCENKPFCFAFSCVVC 374

[Close]

BLAST of Cp4.1LG13g03560 vs. TAIR 10
Match: AT1G21410.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 4.4e-04
Identity = 46/192 (23.96%), Postives = 73/192 (38.02%), Query Frame = 0


Query: 28  PHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDV----LPW------------------ 87
           P E L  +LS +    ++    VC   RDA+   +    L W                  
Sbjct: 32  PVELLMRILSLVDDRNVIVASGVCTGWRDAISFGLTRLRLSWCNNNMNSLVLSLVPKFVK 91

Query: 88  ---LHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLLTK 147
              L+L  D+P   +L D  +E IA      L+ L L    KI+D +L+ +    P LTK
Sbjct: 92  LQTLNLRQDKP---QLEDNAVEAIANHCH-ELQELDLSKSLKITDRSLYALAHGCPDLTK 151

Query: 148 LYVPGCTSLTPEGVI-----------------------RAVETLSQHSHNLNSLMIGGIY 172
           L + GCTS +   +                         A+E +  + + + SL +G   
Sbjct: 152 LNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCE 211

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g03560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZU90	6.3e-56	42.49	F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1	[more]
Q9LU91	6.7e-34	34.24	F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1	[more]
Q9LK24	4.2e-28	34.77	F-box protein At3g27290 OS=Arabidopsis thaliana OX=3702 GN=At3g27290 PE=2 SV=1	[more]

BLAST of Cp4.1LG13g03560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551551.1	1.34e-220	99.67	F-box protein SKIP28-like [Cucurbita pepo subsp. pepo]	[more]
KAG6579265.1	1.69e-207	94.70	F-box protein SKIP28, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022939676.1	4.42e-205	94.00	F-box protein SKIP28 [Cucurbita moschata]	[more]
XP_022973574.1	2.16e-203	93.69	F-box protein SKIP28 [Cucurbita maxima]	[more]
KAG7016781.1	3.52e-192	90.40	F-box protein SKIP28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG13g03560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGL5	2.14e-205	94.00	F-box protein SKIP28 OS=Cucurbita moschata OX=3662 GN=LOC111445493 PE=4 SV=1	[more]
A0A6J1IEZ1	1.05e-203	93.69	F-box protein SKIP28 OS=Cucurbita maxima OX=3661 GN=LOC111472110 PE=4 SV=1	[more]
A0A5A7TYB5	1.05e-150	71.76	F-box protein SKIP28 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4E4Z1	2.37e-150	71.43	F-box protein SKIP28 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504545 PE=4 SV=...	[more]
A0A1S3CSR5	3.81e-150	71.67	F-box protein SKIP28 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504545 PE=4 SV=...	[more]

BLAST of Cp4.1LG13g03560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01620.1	4.4e-57	42.49	RNI-like superfamily protein	[more]
AT3G26000.1	4.8e-35	34.24	Ribonuclease inhibitor	[more]
AT3G27290.1	3.0e-29	34.77	RNI-like superfamily protein	[more]
AT1G21410.1	4.4e-04	23.96	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 26..182 e-value: 3.3E-12 score: 48.0
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 297..491 coord: 24..299
None	No IPR available	PANTHER	PTHR13382:SF16	F-BOX PROTEIN SKIP28	coord: 297..491 coord: 24..299
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 80..354
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 243..254
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 421..432
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 28..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g03560.1	Cp4.1LG13g03560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding