Cp4.1LG13g03550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g03550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Dynein light chain
Location	Cp4.1LG13: 3616021 .. 3618188 (-)
RNA-Seq Expression	Cp4.1LG13g03550
Synteny	Cp4.1LG13g03550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACCAATGCGTTGGTTCAAAGACAGAATCCCACAAACACCAACCCAATTTTATTTTTATATATATAAAAATTTTGATTTTTGTCTCGCAATTCCAACCCTCCCCTGCCTTCGGCTTCCTCCTGGCGCCACTGTTTCTCCTTTTCTTCCCCTTCCCCTTGTCCTCTTCCTTCTTCCGCCAGACATTTTGTCTTTCACCAATGCCGTCCTTGATCGCCTTTTAATTCGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGGGGTTCGGTCTTTTTCCCCATTTGATGAGATTGTAGTGTTGGTGGGTCATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCAGCAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTGCGCTCAAAAAGGTAAGGCAAAAAAGATTAAAAACAAAATTATACCCTTGAACTCACTTTTGGCTCTGAAATGCGTTTTCCTGGTTGCCATTTTGGGTTAGGAGGAGTTTTATAGGATGGTTATTGGACTGTTTTGAGTACTGCCTGGAATGTGTTTGATGAAATGTCTATTTGGTATGAACTAAATTTATTTTCGCCATTTGAAGCCTGGGATTTCTGGGATCTCTACAAATCTAGGTTGAAAATTAATGGTTTCTGAATTTTGTTGCACTTGTTCCTCTTTTGGGATTTTACAACATAGTTAATTAACTACCTCTGTAAACTGTGCATGTTTTTCCTGATTTGAGCACTTCCAAACTTTGGGATTGACCTTTCAATTCCAATTTTGTGTAGCAAATTAAATGTTCTTTATTGCTCAAGAGTCCTCCCTAGACTTGTACTACCGTAGAGAGGGGATGCCATGAAAAAAGTTGTGGACAATGGACATGGCAATTCCTTCCAGTGGGAATTTGCTGCCCACCATTAATTCCATCATAGTTGATAGCCATCCACTACTGACACTGGCCAGCTGCCCTCTGACTGTTCAAAACATGTCGGAACAAGGAGATTGGAGTCATTGTCAAATACTAGATGCTATATTTAAACACTAGATTTAAGAGGAGCCCATCTTATTCTTCTCTTATGCCGTTGAATTTTCCCCTGAATTTGCCATTTTCTACTTCACATGTAGTTATGTCCCTGTGCCATGTGTTTTTTGTTTAATTGTAATGATATGCAAAGATCATGTTTGAAATCTTTGTTGTGAAATATTCAAAGCTCTCTTACCATTCTTGAGGAAAACAAATCTCACGAAAAACATAATCATTACAGTGGCTTGGCTAGAGCCTATATTCATTACAACAAAAATAATTATTTACAAGTCTGAAACCATCCTCGTTCTAAGTTGAGGCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTACTTTAGGCTTTTTCAAAAGGCCTCATACGAATGGAAATAGTATTCCTTACTTAGATTAGCCAACGTGGGACTCCCTCCCAACAATCCTCAACCTTCCCGGTGGATGAGAGCATATTTGGAAGGTTTATTGTTGCCTTAAGTTTGATGTTAATGAAGGTTATATGGGTTTTGCAGGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGATAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGAAAATCTTTGAAAGATTGAGTTTCTGAATTCTGAACGAGGATGGAACAGCAAGAACAACCAGCTTCGATCTTATTATTCTTTTTGGGTTGTATCATTGGGTTCCTCGTTCAAGAAACAGATTGTGCAGGTTCTTCTGTGATGTGAGTTGTGCATTAATTTTACTCGTTGGTTATGAAATTTTGTTGTGTGCAGGATTTGTGATGTTACCATCTTAACCTTCAAATGAAAATTAGACATGAACACTATATTAGGGTCACCTAAAA

mRNA sequence

TGACCAATGCGTTGGTTCAAAGACAGAATCCCACAAACACCAACCCAATTTTATTTTTATATATATAAAAATTTTGATTTTTGTCTCGCAATTCCAACCCTCCCCTGCCTTCGGCTTCCTCCTGGCGCCACTGTTTCTCCTTTTCTTCCCCTTCCCCTTGTCCTCTTCCTTCTTCCGCCAGACATTTTGTCTTTCACCAATGCCGTCCTTGATCGCCTTTTAATTCGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGGGGTTCGGTCTTTTTCCCCATTTGATGAGATTGTAGTGTTGGTGGGTCATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCAGCAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTGCGCTCAAAAAGGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGATAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGAAAATCTTTGAAAGATTGAGTTTCTGAATTCTGAACGAGGATGGAACAGCAAGAACAACCAGCTTCGATCTTATTATTCTTTTTGGGTTGTATCATTGGGTTCCTCGTTCAAGAAACAGATTGTGCAGGTTCTTCTGTGATGTGAGTTGTGCATTAATTTTACTCGTTGGTTATGAAATTTTGTTGTGTGCAGGATTTGTGATGTTACCATCTTAACCTTCAAATGAAAATTAGACATGAACACTATATTAGGGTCACCTAAAA

Coding sequence (CDS)

ATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCAGCAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTGCGCTCAAAAAGGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGATAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGAAAATCTTTGAAAGATTGA

Protein sequence

MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD

Homology

[Close]

BLAST of Cp4.1LG13g03550 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DMP  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQALEKFNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAVLLFKS 88

[Close]

BLAST of Cp4.1LG13g03550 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.7e-14
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 36  VRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSF 95
           + V+ +DMP  +Q  A  C  +  +    + D   +A+ +KKEFD  Y P WHCIVG SF
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFEETNIERD---IAMIIKKEFDKKYSPTWHCIVGKSF 67

Query: 96  GSYVTHSLGGFLYFSIDKVYILLFK 121
           GS+VTH    F+YF+I+K  +LLFK
Sbjct: 68  GSFVTHETKNFIYFNINKHSVLLFK 89

[Close]

BLAST of Cp4.1LG13g03550 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.0e-14
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSDDMQQDAIDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Cp4.1LG13g03550 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-13
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Cp4.1LG13g03550 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-13
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAFIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Cp4.1LG13g03550 vs. NCBI nr
Match: XP_023551552.1 (dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267 bits (683), Expect = 3.58e-90
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 134
           TAVEPLSRGKSLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Cp4.1LG13g03550 vs. NCBI nr
Match: XP_022939677.1 (dynein light chain LC6, flagellar outer arm [Cucurbita moschata] >KAG6579264.1 hypothetical protein SDJN03_23712, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016780.1 hypothetical protein SDJN02_21890 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266 bits (680), Expect = 1.03e-89
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAEMELERR+KFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 134
           TAVEPLSRGKSLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Cp4.1LG13g03550 vs. NCBI nr
Match: XP_022973572.1 (dynein light chain LC6, flagellar outer arm [Cucurbita maxima])

HSP 1 Score: 265 bits (678), Expect = 2.07e-89
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLN+RVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALTLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 134
           TAVEPLSRGKSLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Cp4.1LG13g03550 vs. NCBI nr
Match: XP_038906759.1 (dynein light chain LC6, flagellar outer arm [Benincasa hispida])

HSP 1 Score: 256 bits (653), Expect = 1.35e-85
Identity = 129/134 (96.27%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+GAEMELERRSKFL+GLILKKKAGE QE RDRLNVRVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLSGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 134
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGTSLKD 134

[Close]

BLAST of Cp4.1LG13g03550 vs. NCBI nr
Match: XP_004150121.1 (dynein light chain 1, cytoplasmic [Cucumis sativus] >XP_008467114.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo] >KGN51478.1 hypothetical protein Csa_008341 [Cucumis sativus])

HSP 1 Score: 254 bits (650), Expect = 3.86e-85
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+GAEMELERRSKFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 134
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of Cp4.1LG13g03550 vs. ExPASy TrEMBL
Match: A0A6J1FHG9 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111445494 PE=3 SV=1)

HSP 1 Score: 266 bits (680), Expect = 4.97e-90
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAEMELERR+KFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 134
           TAVEPLSRGKSLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Cp4.1LG13g03550 vs. ExPASy TrEMBL
Match: A0A6J1I7W2 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472109 PE=3 SV=1)

HSP 1 Score: 265 bits (678), Expect = 1.00e-89
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLN+RVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALTLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 134
           TAVEPLSRGKSLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Cp4.1LG13g03550 vs. ExPASy TrEMBL
Match: A0A0A0KPF8 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_5G567290 PE=3 SV=1)

HSP 1 Score: 254 bits (650), Expect = 1.87e-85
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+GAEMELERRSKFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 134
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of Cp4.1LG13g03550 vs. ExPASy TrEMBL
Match: A0A1S3CSY6 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103504546 PE=3 SV=1)

HSP 1 Score: 254 bits (650), Expect = 1.87e-85
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+GAEMELERRSKFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 134
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of Cp4.1LG13g03550 vs. ExPASy TrEMBL
Match: A0A6J1CWZ8 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015562 PE=3 SV=1)

HSP 1 Score: 251 bits (641), Expect = 4.41e-84
Identity = 127/134 (94.78%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEGAEMELERRSKFLNGLI KKKA E QE RDRLN+RVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLIQKKKAVEQQEERDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKR ALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRFALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGKSLKD 134
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGTSLKD 134

[Close]

BLAST of Cp4.1LG13g03550 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 204.5 bits (519), Expect = 5.2e-53
Identity = 99/128 (77.34%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60
           MEG E+ELERRSKFLN LI KKKA E Q+ +D  NVRVRASDMP P QNRAFS +RE+L+
Sbjct: 1   MEGVELELERRSKFLNSLIQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILN 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           + PGK D+KRLA ALKK+FDS+YGPAWHCIVGTSFGSYVTHS GGFLYF IDKVY+LLFK
Sbjct: 61  ATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFK 120

Query: 121 TAVEPLSR 129
           TAVEPL +
Sbjct: 121 TAVEPLDQ 128

[Close]

BLAST of Cp4.1LG13g03550 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-28
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 32  DRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIV 91
           + L VR+ A+DMP  +Q  AF CAR  LDS+  K  SK +A  LKKEFD  YGPAWHCIV
Sbjct: 113 EMLTVRILAADMPGFMQAHAFRCARMTLDSLE-KFSSKHMAFNLKKEFDKGYGPAWHCIV 172

Query: 92  GTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLS 128
           G+SFGS+VTHS G F+YFS+DK+Y+LLFKT V P S
Sbjct: 173 GSSFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRPAS 207

[Close]

BLAST of Cp4.1LG13g03550 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 77.8 bits (190), Expect = 7.4e-15
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           V  SDMP  +Q +A + A + LD +    D K +A  +KKEFD  YG  W C+VG++FG 
Sbjct: 8   VEDSDMPVKMQMQAMAFASQALD-LFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNFGC 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKTAVEP 126
           + THS G F+YF ++ +  L+FK A  P
Sbjct: 68  FFTHSKGTFIYFQLETLKFLIFKGASTP 94

[Close]

BLAST of Cp4.1LG13g03550 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-14
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 37  RVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFG 96
           +V  +DMP  +Q +A   A + LD +    DS  +A  +KKEFD  YG  W C+VGT+FG
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLD-LFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFG 66

Query: 97  SYVTHSLGGFLYFSIDKVYILLFKTA 123
            + THS G F+YF +  +  L+FK A
Sbjct: 67  CFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of Cp4.1LG13g03550 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 41  SDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT 100
           +DM   ++  A S A + LD      +  ++A  +KKEFD SYG  W CIVGT FGS+VT
Sbjct: 11  TDMKQTMKEDALSLASKALDCF-DVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVT 70

Query: 101 HSLGGFLYFSIDKVYILLFKTAV 124
           H  G F++FS+  + ILLFK +V
Sbjct: 71  HCSGCFIHFSVGSLTILLFKGSV 92

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g03550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	1.2e-14	45.24	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q86A88	4.7e-14	44.71	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
Q22799	8.0e-14	45.24	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	1.0e-13	45.24	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
O96860	1.0e-13	45.24	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]

BLAST of Cp4.1LG13g03550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551552.1	3.58e-90	100.00	dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo]	[more]
XP_022939677.1	1.03e-89	99.25	dynein light chain LC6, flagellar outer arm [Cucurbita moschata] >KAG6579264.1 h...	[more]
XP_022973572.1	2.07e-89	98.51	dynein light chain LC6, flagellar outer arm [Cucurbita maxima]	[more]
XP_038906759.1	1.35e-85	96.27	dynein light chain LC6, flagellar outer arm [Benincasa hispida]	[more]
XP_004150121.1	3.86e-85	96.27	dynein light chain 1, cytoplasmic [Cucumis sativus] >XP_008467114.1 PREDICTED: d...	[more]

BLAST of Cp4.1LG13g03550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHG9	4.97e-90	99.25	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111445494 PE=3 SV=1	[more]
A0A6J1I7W2	1.00e-89	98.51	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472109 PE=3 SV=1	[more]
A0A0A0KPF8	1.87e-85	96.27	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_5G567290 PE=3 SV=1	[more]
A0A1S3CSY6	1.87e-85	96.27	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103504546 PE=3 SV=1	[more]
A0A6J1CWZ8	4.41e-84	94.78	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015562 PE=3 SV=1	[more]

BLAST of Cp4.1LG13g03550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23220.1	5.2e-53	77.34	Dynein light chain type 1 family protein	[more]
AT5G20110.1	1.2e-28	62.50	Dynein light chain type 1 family protein	[more]
AT1G52240.2	7.4e-15	43.18	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	4.8e-14	43.02	Dynein light chain type 1 family protein	[more]
AT4G27360.1	1.8e-13	45.78	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 31..121 e-value: 1.6E-39 score: 147.3
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 36..121 e-value: 1.8E-29 score: 101.9
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..127
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 24..122 e-value: 2.8E-33 score: 115.8
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 29..121
None	No IPR available	PANTHER	PTHR11886:SF39	DYNEIN LIGHT CHAIN	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g03550.1	Cp4.1LG13g03550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding