Cp4.1LG13g02470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g02470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG13: 1886131 .. 1889388 (+)
RNA-Seq ExpressionCp4.1LG13g02470
SyntenyCp4.1LG13g02470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATAAACCGGTTGGTGATCTTCCCCCTGCCCGTCTTTTACTAAGATCCCTGGCTTCCACCTCCTGCAGTCCTCTCGCTCTGTGTTCGACAAATGCCTGTAAGTCTCTCCAACTTTAAGATCAGATCTCGTAGAACATCAACTGAATCTCAAATTCTAGGGTTCTTCTTTCTATATTCATTTTGTTTTCTTATGCAATGGAATTTGTGAGTTTCTGATCCGGGAACATGATTGCGTTGGCCGCAGTTCACGACGTTCATTGAAGTGGAACCACCCGGTCCACTGCGATACATAATTGGGGCCGTTATAATGATGATCGGAGTTGTATTGCCCCTCGGATATATGGTGTTCCGGAACAAGCGTGGTTCTTCTTCTTCTTCTTACTCCAAACAGACGTAGGTGTGCCTATGAAATTTACTTGGTTTCGATTCTTCCTTTTCGCTTTTTTGTTAATTAGTTCTTTCTTCTTGATCTTTCGCGTTATCTGTATAATTTTATCATTCCTGTGATCTGTTTATGACTGGAAATCAAGGTCTTCTTCCTGTTGTTTTATATGAAATTGGATTTGTTCTTTCATTCTTCAAATCGCTTTGACCTGACTTATGGACTTTCGGAGCTCGGTTTTTACAGGAAGAAATCGGACTTGGGTACAAATGGTAGTTGAACATTTACTTCTAGTATTGGTTATTAGGATTATGCGGTCTGATGCACCTTGTAAATTTCCAAATGAGGTTTTGGTTGGATTTCTGTCTAAAAGATGAAGGGAATTTCTCGTTGTGCAGTGAATTATTTCTTAGGCCTGTTGAGAAAAGAGTGATTATAATAAGAAAGCAAAAATACTTGACTCTAGCGTAGGAACTCCTTGTTTCCTTACCTCTATGGCTCCTTTTGTTTAGGCTCTCTTCTTGAACTTCTCGTGGAAATGTCAGAAATCTGGCAACTGATCATATGAACCAAAATGAGTTTTCTGGATGGAGGTAGAGGGCGGGTGAGATATTTTTTTAGCAACTAAAATTAGTGTTTTGGATGGCCAGGATATTGTGAATTAGTATTTGTGTTTTAGATATCATTTGAATTGGCACATGTTGGAAGTTTCGGTATGCATTTAGTCATTCGACTTACAAATCTTCATACTTCTTTTTCGAAATTAAAACTACCTCAAACAGAACATCGTCTTCTCCTTTCCTTCGACCTTGCTGTATCCGCTTTTCCTTCACTTTCCTGTACTACATTAGTTCATCATCTGCTGGTACATCCATTGTTAGCCATGCCCTCGTGTTGGAAAGGCAATGTCAAAAAGTAGGAAGCAATAGATGGAGGGGCAGTGTGCGTGGGGTTTTCATTTTCCTAATAAGTGATAGGGGAGAGTATATTAGAACATTCAATTTGCAAAATGTAATAATATGTGAAGAAATATGAAGTATTAATTGTGCTTTTATGATGAAATCTTGAAACAGAGCTACTCAGAAAGTGAAATATGTATAGGAACTTTCATCGGTTACACACTTTTCTATATCTCTATGTTTAGGGTGAAATGAACTATTTATTTGAATGATGCCCCCGTTGTTCTTTGTGTCTTTCCATTGTACTCCTAATTCTTTTTTCCTTCTGAAATATTAGTCCTTGTAGCCCTTTTTTTGTTAAGTCAAACTTCATTGGAGATTGTACATACACGTTGTATATGTCATTAAAGTAGGCGTTTCATAGCTCATAAAGATAAAGTTCCCTCTTTTCTTTATGGAGGAGCATCATCTTGGATTTTTTTAGGGAAGAAGATTATCCTGTGAGTTGGACGTAGGAAGATTATTCCATATTTCCTCAAGCATATAGGACTAAGATACTCCTCTCCTATCTGTACCATTTCAGAGCTATCCATGTAAAGGTTACAGGATTCATATGCATAACTTTCGATAAGTTTAATGCAAGGATGGAACTGTAGTTTAAAAAAGGGCAGTGTAAGCGCTTGTATGCATGTGTAAGCGGATCATCGATAGGAACAAGTAGCAAGTAACGAGTTTAGTCTTTTGTAGTACATTGATGTTTTTTTATGATCGACTCTAATGGGAATTCTGCAATTTGGAATTTCAGGATCAAGGTTTTGATTTAGTTGCATAGAGGAAGAGACACATCTACTTCAGTTTTGGGCTCAGCTAATGGAGGATGCTATTCACAGGGTAATGTAAATGCATTGAGATTTAAAATTTCTGTTGAAACCGACACGATTATGGCCCAATTATTGACCTTAAGCAATGCATTTCATCGTTGCTTTTTCTTGAAATCAATGGCATACAACTGCATCTTGTCATTTGTATTGTTGAAGGAGTTATGTGTGATTACAGTTGACCCACACTTAGTATTATTGAGATACAACCACAAAGGCATGAAAGTACTCTTTGTTGGTCTCCTATGGGTATCTTTCCTCCCAGTGACTTTGAATTGAAAGCTTTAGGTTTAGTCGATTATGACTTTGATCAACATTTTATTGCTACTAATTTCGAGTTGAAAGCCGCCATGTGCAAGGATTGGACACCAAAGTAACCAAAGAACCAATGAACGAGAAACCACTTGTCATGATGATGCTTGATAGTTAAAAGCCAAAGCAGGCAAGGGCATGTTTGAAAGTAATTTTAAAAGATTAAAAATTACTTTTTTATGTTTCAAAATAATTTCAAAACGTGTATTTAGTCACTAAAAATTAATTTAATGTTGATTTTCTATGTTTAAACACGACTTTTATACTATCAAAATTGATATTGAATGATCAAACATATGTTTTGATGTGATATGTACAATTTAGACTCGTTTCAAAATCACTTCTAAACATGACCTGTTAAATCTTTCGGGCTAATGTCACTATTTCTATTCTATTGCCATTTCGTTTTTTTTTTAATAATAATAATTATTATTATTATTATTATGGGCTTATCAGTAAATTAACCACTAAGCTTCTTCATTATTCTTAAGCTTTTTTTTTTATCTTGTTATAAAGATAAACCACTTGTTCTATTTTAGTAAGTACTTAAATGTACAAAATCAGTCTATCAACTTCAAACAGTTTCACACTTTGTATTTTGTTCATATGCATTATTTAACTATTTTGCAAAGTTCAGTAAAAACTACCATCAAATAAACATTATTAAGAGTAGATGACTAAATTTTAATATTTAAAAGTTGTATGAACTAAAATGATATTTTAGTTGACTTTTTTTTTTAACATTTTTTAATTTAATATGCAGAGTGAAATATTCGAATCTCTAA

mRNA sequence

TGAATAAACCGGTTGGTGATCTTCCCCCTGCCCGTCTTTTACTAAGATCCCTGGCTTCCACCTCCTGCAGTCCTCTCGCTCTGTGTTCGACAAATGCCTTTCACGACGTTCATTGAAGTGGAACCACCCGGTCCACTGCGATACATAATTGGGGCCGTTATAATGATGATCGGAGTTGTATTGCCCCTCGGATATATGGTGTTCCGGAACAAGCGTGGTTCTTCTTCTTCTTCTTACTCCAAACAGACTTGCATAGAGGAAGAGACACATCTACTTCAGTTTTGGGCTCAGCTAATGGAGGATGCTATTCACAGGGTAATAGTGAAATATTCGAATCTCTAA

Coding sequence (CDS)

ATGCCTTTCACGACGTTCATTGAAGTGGAACCACCCGGTCCACTGCGATACATAATTGGGGCCGTTATAATGATGATCGGAGTTGTATTGCCCCTCGGATATATGGTGTTCCGGAACAAGCGTGGTTCTTCTTCTTCTTCTTACTCCAAACAGACTTGCATAGAGGAAGAGACACATCTACTTCAGTTTTGGGCTCAGCTAATGGAGGATGCTATTCACAGGGTAATAGTGAAATATTCGAATCTCTAA

Protein sequence

MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRGSSSSSYSKQTCIEEETHLLQFWAQLMEDAIHRVIVKYSNL
Homology
[Close]
BLAST of Cp4.1LG13g02470 vs. NCBI nr
Match: KAG7016882.1 (hypothetical protein SDJN02_21993 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151 bits (381), Expect = 6.48e-45
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRGSSSSSYSKQTCIEEETHL 60
          MPFTTFIEVEPPGPLRYIIGAVIM+IGVVLPLGYMVFRNKRGSSSSSYSKQTCIEEETHL
Sbjct: 1  MPFTTFIEVEPPGPLRYIIGAVIMIIGVVLPLGYMVFRNKRGSSSSSYSKQTCIEEETHL 60

Query: 61 LQFWAQLMEDAIHRV 75
          LQFWAQLMEDAIHR+
Sbjct: 61 LQFWAQLMEDAIHRI 75

[Close]
BLAST of Cp4.1LG13g02470 vs. NCBI nr
Match: XP_008437061.1 (PREDICTED: uncharacterized protein LOC103482600 isoform X2 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 5.66e-24
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRG-SSSSSYSKQT 52
          MPF+TFIEVEPP PLRYIIGAVIMMIGVVLPLGYM+FRNKRG SSSSSYSKQT
Sbjct: 1  MPFSTFIEVEPPSPLRYIIGAVIMMIGVVLPLGYMLFRNKRGPSSSSSYSKQT 53

[Close]
BLAST of Cp4.1LG13g02470 vs. NCBI nr
Match: XP_008437060.1 (PREDICTED: uncharacterized protein LOC103482600 isoform X1 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 6.40e-24
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRG-SSSSSYSKQT 52
          MPF+TFIEVEPP PLRYIIGAVIMMIGVVLPLGYM+FRNKRG SSSSSYSKQT
Sbjct: 1  MPFSTFIEVEPPSPLRYIIGAVIMMIGVVLPLGYMLFRNKRGPSSSSSYSKQT 53

[Close]
BLAST of Cp4.1LG13g02470 vs. NCBI nr
Match: KAG7036117.1 (hypothetical protein SDJN02_02917, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 7.01e-24
Identity = 62/102 (60.78%), Postives = 66/102 (64.71%), Query Frame = 0 

Query: 3   FTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRG-SSSSSYSKQTCIE-----E 62
           F TF+EVEPP PLRYIIGAVIMMIGVVLPLGYM+FRNKRG SSSSSYSKQT  E     E
Sbjct: 24  FGTFVEVEPPSPLRYIIGAVIMMIGVVLPLGYMMFRNKRGPSSSSSYSKQTFSEHMRNLE 83

Query: 63  ETHLLQ--FW--------------------AQLMEDAIHRVI 76
             H  Q  FW                    +QLMEDAIHRV+
Sbjct: 84  NDHDPQRVFWFEDQSFDLVRGRDASVLVLGSQLMEDAIHRVM 125

[Close]
BLAST of Cp4.1LG13g02470 vs. NCBI nr
Match: XP_022154814.1 (uncharacterized protein LOC111021976 isoform X2 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 8.05e-24
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRG-SSSSSYSKQT 52
          MPF+TFIEVEPP PLRYIIGAV+MMIGVVLPLGYM+FRNKRG SSSSSYSKQT
Sbjct: 1  MPFSTFIEVEPPSPLRYIIGAVVMMIGVVLPLGYMMFRNKRGPSSSSSYSKQT 53

[Close]
BLAST of Cp4.1LG13g02470 vs. ExPASy TrEMBL
Match: A0A1S3ATP1 (uncharacterized protein LOC103482600 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482600 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.74e-24
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRG-SSSSSYSKQT 52
          MPF+TFIEVEPP PLRYIIGAVIMMIGVVLPLGYM+FRNKRG SSSSSYSKQT
Sbjct: 1  MPFSTFIEVEPPSPLRYIIGAVIMMIGVVLPLGYMLFRNKRGPSSSSSYSKQT 53

[Close]
BLAST of Cp4.1LG13g02470 vs. ExPASy TrEMBL
Match: A0A1S3AT37 (uncharacterized protein LOC103482600 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482600 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.10e-24
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRG-SSSSSYSKQT 52
          MPF+TFIEVEPP PLRYIIGAVIMMIGVVLPLGYM+FRNKRG SSSSSYSKQT
Sbjct: 1  MPFSTFIEVEPPSPLRYIIGAVIMMIGVVLPLGYMLFRNKRGPSSSSSYSKQT 53

[Close]
BLAST of Cp4.1LG13g02470 vs. ExPASy TrEMBL
Match: A0A6J1DNA4 (uncharacterized protein LOC111021976 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021976 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.90e-24
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRG-SSSSSYSKQT 52
          MPF+TFIEVEPP PLRYIIGAV+MMIGVVLPLGYM+FRNKRG SSSSSYSKQT
Sbjct: 1  MPFSTFIEVEPPSPLRYIIGAVVMMIGVVLPLGYMMFRNKRGPSSSSSYSKQT 53

[Close]
BLAST of Cp4.1LG13g02470 vs. ExPASy TrEMBL
Match: A0A6J1DLB6 (uncharacterized protein LOC111021976 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021976 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.19e-24
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRG-SSSSSYSKQT 52
          MPF+TFIEVEPP PLRYIIGAV+MMIGVVLPLGYM+FRNKRG SSSSSYSKQT
Sbjct: 1  MPFSTFIEVEPPSPLRYIIGAVVMMIGVVLPLGYMMFRNKRGPSSSSSYSKQT 53

[Close]
BLAST of Cp4.1LG13g02470 vs. ExPASy TrEMBL
Match: A0A0A0KPA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162600 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.12e-23
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRG-SSSSSYSKQT 52
          MPF+TFIEVEPP PLRYI GAVIMMIGVVLPLGYM+FRNKRG SSSSSYSKQT
Sbjct: 1  MPFSTFIEVEPPSPLRYIFGAVIMMIGVVLPLGYMLFRNKRGPSSSSSYSKQT 53

[Close]
BLAST of Cp4.1LG13g02470 vs. TAIR 10
Match: AT4G16695.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 9.1e-16
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRGSSSSSYSKQT 53
          MPF T IEVEPP  LRY+IG+ +MMIGVVLP+GYM+FRNKR   SSSYSKQT
Sbjct: 1  MPFKTVIEVEPPSLLRYLIGSAVMMIGVVLPVGYMMFRNKRVPFSSSYSKQT 52

[Close]
BLAST of Cp4.1LG13g02470 vs. TAIR 10
Match: AT4G16695.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 21 Blast hits to 21 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 9.1e-16
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRGSSSSSYSKQT 53
          MPF T IEVEPP  LRY+IG+ +MMIGVVLP+GYM+FRNKR   SSSYSKQT
Sbjct: 1  MPFKTVIEVEPPSLLRYLIGSAVMMIGVVLPVGYMMFRNKRVPFSSSYSKQT 52

[Close]
BLAST of Cp4.1LG13g02470 vs. TAIR 10
Match: AT4G16695.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 21 Blast hits to 21 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 9.1e-16
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0 

Query: 1  MPFTTFIEVEPPGPLRYIIGAVIMMIGVVLPLGYMVFRNKRGSSSSSYSKQT 53
          MPF T IEVEPP  LRY+IG+ +MMIGVVLP+GYM+FRNKR   SSSYSKQT
Sbjct: 1  MPFKTVIEVEPPSLLRYLIGSAVMMIGVVLPVGYMMFRNKRVPFSSSYSKQT 52

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g02470 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g02470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016882.16.48e-4597.33hypothetical protein SDJN02_21993 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_008437061.15.66e-2492.45PREDICTED: uncharacterized protein LOC103482600 isoform X2 [Cucumis melo][more]
XP_008437060.16.40e-2492.45PREDICTED: uncharacterized protein LOC103482600 isoform X1 [Cucumis melo][more]
KAG7036117.17.01e-2460.78hypothetical protein SDJN02_02917, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022154814.18.05e-2490.57uncharacterized protein LOC111021976 isoform X2 [Momordica charantia][more]
BLAST of Cp4.1LG13g02470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3ATP12.74e-2492.45uncharacterized protein LOC103482600 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3AT373.10e-2492.45uncharacterized protein LOC103482600 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1DNA43.90e-2490.57uncharacterized protein LOC111021976 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DLB64.19e-2490.57uncharacterized protein LOC111021976 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A0A0KPA41.12e-2390.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162600 PE=4 SV=1[more]
BLAST of Cp4.1LG13g02470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16695.29.1e-1675.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G16695.19.1e-1675.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G16695.39.1e-1675.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37749TRANSMEMBRANE PROTEINcoord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g02470.1Cp4.1LG13g02470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane