Cp4.1LG13g02050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g02050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG13: 1562668 .. 1563657 (-)
RNA-Seq Expression	Cp4.1LG13g02050
Synteny	Cp4.1LG13g02050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAACTCAGATTCATGCCCAAATTCTATTCAATGGGCTTCGAAATCTCGAGTCTTGCTTGGTCCGTCAAATTACTTGTTCTGAGTTCTCTTGCGCCAGAATCGTATCCCGTTATCTCCAACGGATCCTTCGTCATTCGCAAAACCCAGATTCCTTCTCATGGGGCTGCGCCGTTCGGTTCTTTTCCCAGAACGGCCAATTCATGGAAGCAATCTCCCATTTTGTTCAGATGCAGAGATTGGGACTGCATCCGAGCACCTTTGCTGTATCCTCGACTTTGAGAGCTTGCGGTAGGATTACCTGTAAGTTTAGTGGGAGCTCTGTTCATGCTCAGGTATATAAATTGGGGTTTTGTCGCTGTGTTTATGTGCAAACTGCCCTTGTGGATTTTTACTCAAAATTGGGTGATATGGGTTTTGCTCGGAAGGTGTTTGATGATATGACTGAGAAAAATGTGGTTTCGTGGAATTCAATCTTGTCTGGTTATGTGAAAATTGGAAACTTAGATGACGCTCAGAAAGTGTTCGATGAAATGCCTGTGAAGGATGTCATATCTTGGAATTCAATGTTGACGGGATTCGCCAATTCTGGCAATATGGATCGAGCGTCGTGCTTATTTCAACAACTGGGGGAAAGAAGTTCCGCTTCTTGGAATGCAATGATCAGTGGTTACGTGAACTGTGGAGACATGAAGTCTGCAAGAAACATGTTTGATGAAATGCCTAACAGAAATAATGTTTCCTGGATAACATTGATTGCTGGGTATTCGAAGCTTGGGGAGGTTGGTTCTGCTTGTGAGCTCTTTAATAATATGGGTGAGAAAGAGATTCTCTCTTATAACGCCATGATTGCTTGCTATTCACAAAATGGCATGCCTAACGAAGCATTGAAGTTATTCAACCAAATGCTTCAACCCCATGTGAATATCCAACCCGATGAGATGACTTTTGCTAGCATTATATCTGCTTGTACTCAGCTGGGAAATCTGAAT

mRNA sequence

GCAACTCAGATTCATGCCCAAATTCTATTCAATGGGCTTCGAAATCTCGAGTCTTGCTTGGTCCGTCAAATTACTTGTTCTGAGTTCTCTTGCGCCAGAATCGTATCCCGTTATCTCCAACGGATCCTTCGTCATTCGCAAAACCCAGATTCCTTCTCATGGGGCTGCGCCGTTCGGTTCTTTTCCCAGAACGGCCAATTCATGGAAGCAATCTCCCATTTTGTTCAGATGCAGAGATTGGGACTGCATCCGAGCACCTTTGCTTGGTTACGTGAACTGTGGAGACATGAAGTCTGCAAGAAACATGTTTGATGAAATGCCTAACAGAAATAATGTTTCCTGGATAACATTGATTGCTGGGTATTCGAAGCTTGGGGAGGTTGGTTCTGCTTGTGAGCTCTTTAATAATATGGGTGAGAAAGAGATTCTCTCTTATAACGCCATGATTGCTTGCTATTCACAAAATGGCATGCCTAACGAAGCATTGAAGTTATTCAACCAAATGCTTCAACCCCATGTGAATATCCAACCCGATGAGATGACTTTTGCTAGCATTATATCTGCTTGTACTCAGCTGGGAAATCTGAAT

Coding sequence (CDS)

ATGCCCAAATTCTATTCAATGGGCTTCGAAATCTCGAGTCTTGCTTGGTCCGTCAAATTACTTGTTCTGAGTTCTCTTGCGCCAGAATCGTATCCCGTTATCTCCAACGGATCCTTCGTCATTCGCAAAACCCAGATTCCTTCTCATGGGGCTGCGCCGTTCGGTTCTTTTCCCAGAACGGCCAATTCATGGAAGCAATCTCCCATTTTGTTCAGATGCAGAGATTGGGACTGCATCCGAGCACCTTTGCTTGGTTACGTGAACTGTGGAGACATGAAGTCTGCAAGAAACATGTTTGATGAAATGCCTAACAGAAATAATGTTTCCTGGATAACATTGATTGCTGGGTATTCGAAGCTTGGGGAGGTTGGTTCTGCTTGTGAGCTCTTTAATAATATGGGTGAGAAAGAGATTCTCTCTTATAACGCCATGATTGCTTGCTATTCACAAAATGGCATGCCTAACGAAGCATTGAAGTTATTCAACCAAATGCTTCAACCCCATGTGAATATCCAACCCGATGAGATGACTTTTGCTAGCATTATATCTGCTTGTACTCAGCTGGGAAATCTGAAT

Protein sequence

MPKFYSMGFEISSLAWSVKLLVLSSLAPESYPVISNGSFVIRKTQIPSHGAAPFGSFPRTANSWKQSPILFRCRDWDCIRAPLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN

Homology

[Close]

BLAST of Cp4.1LG13g02050 vs. ExPASy Swiss-Prot
Match: P0C8Q5 (Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E6 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.4e-32
Identity = 66/106 (62.26%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 85  GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAM 144
           GYVNC +MK AR  FD MP +N VSWIT+I+GY+KLG+V SA ELF  M +K+ L Y+AM
Sbjct: 241 GYVNCREMKLARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAM 300

Query: 145 IACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGN 191
           IACY+QNG P +ALKLF QML+ +  IQPDE+T +S++SA +QLGN
Sbjct: 301 IACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGN 346

[Close]

BLAST of Cp4.1LG13g02050 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-19
Identity = 43/106 (40.57%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 86  YVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAMI 145
           Y  CG ++ A+ +FD M  ++NV+W T++ GY+   +  +A E+ N+M +K+I+++NA+I
Sbjct: 277 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALI 336

Query: 146 ACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNL 192
           + Y QNG PNEAL +F++ LQ   N++ +++T  S +SAC Q+G L
Sbjct: 337 SAYEQNGKPNEALIVFHE-LQLQKNMKLNQITLVSTLSACAQVGAL 381

[Close]

BLAST of Cp4.1LG13g02050 vs. ExPASy Swiss-Prot
Match: Q9FFG8 (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.1e-19
Identity = 45/104 (43.27%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 86  YVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAMI 145
           YV C  +  AR +FDEMP R+ +SW  LIA Y+++G +  A ELF ++  K+++++ AM+
Sbjct: 194 YVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMV 253

Query: 146 ACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLG 190
             ++QN  P EAL+ F++M +    I+ DE+T A  ISAC QLG
Sbjct: 254 TGFAQNAKPQEALEYFDRMEKS--GIRADEVTVAGYISACAQLG 295

[Close]

BLAST of Cp4.1LG13g02050 vs. ExPASy Swiss-Prot
Match: Q9FHR3 (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E37 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.3e-19
Identity = 43/105 (40.95%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 85  GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAM 144
           G V  GD+ +A+ +FDEMP R+ +S+ ++I GY+K G++ SA +LF      ++ +++A+
Sbjct: 216 GLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSAL 275

Query: 145 IACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLG 190
           I  Y+QNG PNEA K+F++M     N++PDE     ++SAC+Q+G
Sbjct: 276 ILGYAQNGQPNEAFKVFSEMCAK--NVKPDEFIMVGLMSACSQMG 318

[Close]

BLAST of Cp4.1LG13g02050 vs. ExPASy Swiss-Prot
Match: Q1PEU4 (Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E9 PE=2 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-18
Identity = 42/108 (38.89%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 85  GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAM 144
           G+V  GDM SAR +FDEM ++  ++W T+I GY  + ++ +A +LF+ M E+ ++S+N M
Sbjct: 185 GFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTM 244

Query: 145 IACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 193
           I  Y QN  P E ++LF +M Q   ++ PD++T  S++ A +  G L+
Sbjct: 245 IGGYCQNKQPQEGIRLFQEM-QATTSLDPDDVTILSVLPAISDTGALS 291

[Close]

BLAST of Cp4.1LG13g02050 vs. NCBI nr
Match: XP_022922292.1 (pentatricopeptide repeat-containing protein At4g22760 [Cucurbita moschata])

HSP 1 Score: 228 bits (580), Expect = 5.09e-68
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 81  APLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 140
           A + GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS
Sbjct: 237 AMISGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 296

Query: 141 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 192
           YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN
Sbjct: 297 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 348

[Close]

BLAST of Cp4.1LG13g02050 vs. NCBI nr
Match: KAG6579446.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016919.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228 bits (580), Expect = 5.09e-68
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 81  APLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 140
           A + GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS
Sbjct: 237 AMISGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 296

Query: 141 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 192
           YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN
Sbjct: 297 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 348

[Close]

BLAST of Cp4.1LG13g02050 vs. NCBI nr
Match: XP_023549917.1 (pentatricopeptide repeat-containing protein At4g22760 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228 bits (580), Expect = 5.09e-68
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 81  APLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 140
           A + GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS
Sbjct: 237 AMISGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 296

Query: 141 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 192
           YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN
Sbjct: 297 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 348

[Close]

BLAST of Cp4.1LG13g02050 vs. NCBI nr
Match: XP_022969837.1 (pentatricopeptide repeat-containing protein At4g22760 [Cucurbita maxima])

HSP 1 Score: 224 bits (572), Expect = 7.76e-67
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 81  APLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 140
           A + GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS
Sbjct: 237 AMISGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 296

Query: 141 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 192
           YNA+IACYSQNGMPNEALKLFNQMLQPHV+IQPDEMTFASIISACTQLGNLN
Sbjct: 297 YNALIACYSQNGMPNEALKLFNQMLQPHVDIQPDEMTFASIISACTQLGNLN 348

[Close]

BLAST of Cp4.1LG13g02050 vs. NCBI nr
Match: XP_038874892.1 (pentatricopeptide repeat-containing protein At4g22760-like [Benincasa hispida])

HSP 1 Score: 199 bits (506), Expect = 4.68e-58
Identity = 95/112 (84.82%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 81  APLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 140
           A + GYVNCGD+KSARN+FD MPNRNNVSWITLIAGYSKLGEV SA ELF+ MGEKE+LS
Sbjct: 237 AMISGYVNCGDIKSARNLFDVMPNRNNVSWITLIAGYSKLGEVNSAYELFDKMGEKELLS 296

Query: 141 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 192
           +NAMIACYSQN +PN+AL+LFNQMLQP VNIQPDEMTFASIISACTQLGNLN
Sbjct: 297 FNAMIACYSQNSLPNKALELFNQMLQPDVNIQPDEMTFASIISACTQLGNLN 348

[Close]

BLAST of Cp4.1LG13g02050 vs. ExPASy TrEMBL
Match: A0A6J1E2U4 (pentatricopeptide repeat-containing protein At4g22760 OS=Cucurbita moschata OX=3662 GN=LOC111430313 PE=4 SV=1)

HSP 1 Score: 228 bits (580), Expect = 2.46e-68
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 81  APLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 140
           A + GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS
Sbjct: 237 AMISGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 296

Query: 141 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 192
           YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN
Sbjct: 297 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 348

[Close]

BLAST of Cp4.1LG13g02050 vs. ExPASy TrEMBL
Match: A0A6J1HXF1 (pentatricopeptide repeat-containing protein At4g22760 OS=Cucurbita maxima OX=3661 GN=LOC111468920 PE=4 SV=1)

HSP 1 Score: 224 bits (572), Expect = 3.76e-67
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 81  APLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 140
           A + GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS
Sbjct: 237 AMISGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 296

Query: 141 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 192
           YNA+IACYSQNGMPNEALKLFNQMLQPHV+IQPDEMTFASIISACTQLGNLN
Sbjct: 297 YNALIACYSQNGMPNEALKLFNQMLQPHVDIQPDEMTFASIISACTQLGNLN 348

[Close]

BLAST of Cp4.1LG13g02050 vs. ExPASy TrEMBL
Match: A0A5A7THR1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003540 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 4.41e-55
Identity = 92/114 (80.70%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 81  APLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGE--KEI 140
           A + GYVNCGDMK+ARN+FD MPNRNNV+ ITLIAGYSKLGEV SACELF+ MGE  KE+
Sbjct: 237 AMISGYVNCGDMKAARNLFDVMPNRNNVTRITLIAGYSKLGEVNSACELFDKMGENEKEL 296

Query: 141 LSYNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 192
            S+NAMIACYSQNG+PN+AL+LFNQMLQPH+NIQPDEMTFAS+ISACTQLGNL+
Sbjct: 297 FSFNAMIACYSQNGLPNKALELFNQMLQPHLNIQPDEMTFASVISACTQLGNLS 350

[Close]

BLAST of Cp4.1LG13g02050 vs. ExPASy TrEMBL
Match: A0A1S3ATB6 (pentatricopeptide repeat-containing protein At4g22760 OS=Cucumis melo OX=3656 GN=LOC103482665 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 4.41e-55
Identity = 92/114 (80.70%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 81  APLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGE--KEI 140
           A + GYVNCGDMK+ARN+FD MPNRNNV+ ITLIAGYSKLGEV SACELF+ MGE  KE+
Sbjct: 237 AMISGYVNCGDMKAARNLFDVMPNRNNVTRITLIAGYSKLGEVNSACELFDKMGENEKEL 296

Query: 141 LSYNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 192
            S+NAMIACYSQNG+PN+AL+LFNQMLQPH+NIQPDEMTFAS+ISACTQLGNL+
Sbjct: 297 FSFNAMIACYSQNGLPNKALELFNQMLQPHLNIQPDEMTFASVISACTQLGNLS 350

[Close]

BLAST of Cp4.1LG13g02050 vs. ExPASy TrEMBL
Match: A0A6J1DT09 (pentatricopeptide repeat-containing protein At4g22760 OS=Momordica charantia OX=3673 GN=LOC111022884 PE=4 SV=1)

HSP 1 Score: 191 bits (486), Expect = 1.69e-54
Identity = 91/112 (81.25%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 81  APLLGYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILS 140
           A + GY+N GD+KSARN+FD MP RNNVSWITLIAGYSKLG+VGSA ELF+ MGEKE+LS
Sbjct: 239 AMISGYMNYGDIKSARNLFDVMPQRNNVSWITLIAGYSKLGDVGSARELFDKMGEKELLS 298

Query: 141 YNAMIACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 192
           +NAMIACYSQN +PNEAL+LF+QMLQPH NIQPDEMTFASIISAC+QLGNLN
Sbjct: 299 FNAMIACYSQNSLPNEALELFDQMLQPHENIQPDEMTFASIISACSQLGNLN 350

[Close]

BLAST of Cp4.1LG13g02050 vs. TAIR 10
Match: AT4G22760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-33
Identity = 66/106 (62.26%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 85  GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAM 144
           GYVNC +MK AR  FD MP +N VSWIT+I+GY+KLG+V SA ELF  M +K+ L Y+AM
Sbjct: 241 GYVNCREMKLARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAM 300

Query: 145 IACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGN 191
           IACY+QNG P +ALKLF QML+ +  IQPDE+T +S++SA +QLGN
Sbjct: 301 IACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGN 346

[Close]

BLAST of Cp4.1LG13g02050 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-20
Identity = 43/106 (40.57%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 86  YVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAMI 145
           Y  CG ++ A+ +FD M  ++NV+W T++ GY+   +  +A E+ N+M +K+I+++NA+I
Sbjct: 277 YTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALI 336

Query: 146 ACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNL 192
           + Y QNG PNEAL +F++ LQ   N++ +++T  S +SAC Q+G L
Sbjct: 337 SAYEQNGKPNEALIVFHE-LQLQKNMKLNQITLVSTLSACAQVGAL 381

[Close]

BLAST of Cp4.1LG13g02050 vs. TAIR 10
Match: AT5G44230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-20
Identity = 45/104 (43.27%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 86  YVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAMI 145
           YV C  +  AR +FDEMP R+ +SW  LIA Y+++G +  A ELF ++  K+++++ AM+
Sbjct: 194 YVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMV 253

Query: 146 ACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLG 190
             ++QN  P EAL+ F++M +    I+ DE+T A  ISAC QLG
Sbjct: 254 TGFAQNAKPQEALEYFDRMEKS--GIRADEVTVAGYISACAQLG 295

[Close]

BLAST of Cp4.1LG13g02050 vs. TAIR 10
Match: AT5G37570.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-20
Identity = 43/105 (40.95%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 85  GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAM 144
           G V  GD+ +A+ +FDEMP R+ +S+ ++I GY+K G++ SA +LF      ++ +++A+
Sbjct: 216 GLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSAL 275

Query: 145 IACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLG 190
           I  Y+QNG PNEA K+F++M     N++PDE     ++SAC+Q+G
Sbjct: 276 ILGYAQNGQPNEAFKVFSEMCAK--NVKPDEFIMVGLMSACSQMG 318

[Close]

BLAST of Cp4.1LG13g02050 vs. TAIR 10
Match: AT2G44880.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 8.4e-20
Identity = 42/108 (38.89%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 85  GYVNCGDMKSARNMFDEMPNRNNVSWITLIAGYSKLGEVGSACELFNNMGEKEILSYNAM 144
           G+V  GDM SAR +FDEM ++  ++W T+I GY  + ++ +A +LF+ M E+ ++S+N M
Sbjct: 185 GFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTM 244

Query: 145 IACYSQNGMPNEALKLFNQMLQPHVNIQPDEMTFASIISACTQLGNLN 193
           I  Y QN  P E ++LF +M Q   ++ PD++T  S++ A +  G L+
Sbjct: 245 IGGYCQNKQPQEGIRLFQEM-QATTSLDPDDVTILSVLPAISDTGALS 291

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g02050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C8Q5	2.4e-32	62.26	Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana OX...	[more]
O82380	1.8e-19	40.57	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q9FFG8	4.1e-19	43.27	Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX...	[more]
Q9FHR3	5.3e-19	40.95	Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis th...	[more]
Q1PEU4	1.2e-18	38.89	Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG13g02050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922292.1	5.09e-68	97.32	pentatricopeptide repeat-containing protein At4g22760 [Cucurbita moschata]	[more]
KAG6579446.1	5.09e-68	97.32	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023549917.1	5.09e-68	97.32	pentatricopeptide repeat-containing protein At4g22760 [Cucurbita pepo subsp. pep...	[more]
XP_022969837.1	7.76e-67	95.54	pentatricopeptide repeat-containing protein At4g22760 [Cucurbita maxima]	[more]
XP_038874892.1	4.68e-58	84.82	pentatricopeptide repeat-containing protein At4g22760-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG13g02050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2U4	2.46e-68	97.32	pentatricopeptide repeat-containing protein At4g22760 OS=Cucurbita moschata OX=3...	[more]
A0A6J1HXF1	3.76e-67	95.54	pentatricopeptide repeat-containing protein At4g22760 OS=Cucurbita maxima OX=366...	[more]
A0A5A7THR1	4.41e-55	80.70	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3ATB6	4.41e-55	80.70	pentatricopeptide repeat-containing protein At4g22760 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1DT09	1.69e-54	81.25	pentatricopeptide repeat-containing protein At4g22760 OS=Momordica charantia OX=...	[more]

BLAST of Cp4.1LG13g02050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22760.1	1.7e-33	62.26	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G29760.1	1.3e-20	40.57	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G44230.1	2.9e-20	43.27	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G37570.1	3.8e-20	40.95	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G44880.1	8.4e-20	38.89	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 71..192 e-value: 7.7E-28 score: 99.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 108..137 e-value: 2.7E-5 score: 24.1 coord: 85..106 e-value: 0.027 score: 14.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 108..137 e-value: 6.8E-5 score: 20.8 coord: 140..165 e-value: 2.2E-8 score: 31.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 138..185 e-value: 9.3E-12 score: 45.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 137..171 score: 10.676364
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 106..136 score: 8.878711
None	No IPR available	PANTHER	PTHR24015:SF1771	OS08G0162200 PROTEIN	coord: 69..191
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 69..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g02050.1	Cp4.1LG13g02050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding