Cp4.1LG13g01760 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g01760
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionprotein P21-like
LocationCp4.1LG13: 1354057 .. 1354275 (-)
RNA-Seq ExpressionCp4.1LG13g01760
SyntenyCp4.1LG13g01760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTTTAGGAAGATGATGAAGATCAAGATGAGGATGATAGTTGTGAATATTTGTTCTTCTTTTATCTCTTCTTTCTTTTTGTTCCCACATCCATGCGGCTATCTGTGAAGTACGCAACAATTGTCTCTTCACTCTTTGGGCACAATTGTCTCTTCACTCTTTGGGCTGCTGTAGTGCCAGGCGGCGGACGACAGCTTAATCAAACAGATGTTTGA

mRNA sequence

ATGCAAGAAGATGATGAAGATCAAGATGAGGATGATAGTTGTGAATATTTGTTCTTCTTTTATCTCTTCTTTCTTTTTGTTCCCACATCCATGCGGCTATCTGTGAAGTACGCAACAATTGTCTCTTCACTCTTTGGGCACAATTGTCTCTTCACTCTTTGGGCTGCTGTAGTGCCAGGCGGCGGACGACAGCTTAATCAAACAGATGTTTGA

Coding sequence (CDS)

ATGCAAGAAGATGATGAAGATCAAGATGAGGATGATAGTTGTGAATATTTGTTCTTCTTTTATCTCTTCTTTCTTTTTGTTCCCACATCCATGCGGCTATCTGTGAAGTACGCAACAATTGTCTCTTCACTCTTTGGGCACAATTGTCTCTTCACTCTTTGGGCTGCTGTAGTGCCAGGCGGCGGACGACAGCTTAATCAAACAGATGTTTGA

Protein sequence

MQEDDEDQDEDDSCEYLFFFYLFFLFVPTSMRLSVKYATIVSSLFGHNCLFTLWAAVVPGGGRQLNQTDV
Homology
BLAST of Cp4.1LG13g01760 vs. NCBI nr
Match: KAG7016954.1 (Thaumatin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.9 bits (128), Expect = 3.20e-06
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 0

Query: 47  HNCLFTLWAAVVPGGGRQLNQTDV 70
           +NCLFT+WAAVVPGGGRQLNQTDV
Sbjct: 214 NNCLFTVWAAVVPGGGRQLNQTDV 237

BLAST of Cp4.1LG13g01760 vs. NCBI nr
Match: XP_022969830.1 (protein P21-like [Cucurbita maxima])

HSP 1 Score: 52.8 bits (125), Expect = 6.26e-06
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 13 SCEYLFFFYLFFLFVPTSMRLSVKYATIVSSLFGHNCLFTLWAAVVPGGGRQLNQTDV 70
          +C + FFF LF      S    +KYA   +    +NC FT+WAA VPGGGR+LN+ +V
Sbjct: 30 NCPFTFFFLLF------STLFCLKYADAATFEVRNNCPFTVWAAAVPGGGRRLNRNEV 81

BLAST of Cp4.1LG13g01760 vs. NCBI nr
Match: XP_022159533.1 (thaumatin-like protein 1 [Momordica charantia])

HSP 1 Score: 51.6 bits (122), Expect = 1.47e-05
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 22 LFFLFVPTSMRLSVKYATIVSSLFGHNCLFTLWAAVVPGGGRQLNQTDV 70
          +FFLF  +S  L   +    +    +NC FT+WAA VPGGGRQLN+ DV
Sbjct: 6  IFFLFFLSSFSLFSSHTHAATFEIRNNCGFTVWAAAVPGGGRQLNRNDV 54

BLAST of Cp4.1LG13g01760 vs. NCBI nr
Match: XP_022922158.1 (uncharacterized protein LOC111430220 [Cucurbita moschata])

HSP 1 Score: 51.2 bits (121), Expect = 2.78e-05
Identity = 20/24 (83.33%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 47 HNCLFTLWAAVVPGGGRQLNQTDV 70
          +NC+FT+WAA VPGGGRQLNQTDV
Sbjct: 64 NNCVFTVWAAAVPGGGRQLNQTDV 87

BLAST of Cp4.1LG13g01760 vs. NCBI nr
Match: GAY48426.1 (hypothetical protein CUMW_111570 [Citrus unshiu])

HSP 1 Score: 49.3 bits (116), Expect = 3.78e-05
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 19 FFYLFFLFVPTSMRLSVKYATIVSSLFGHNCLFTLWAAVVPGGGRQLNQ 67
          +F +FFLF+  S   S   AT       +NC FT+WAA VPGGGRQLN+
Sbjct: 6  YFLIFFLFISLSSLTSTHGATFE---IRNNCPFTVWAAAVPGGGRQLNR 51

BLAST of Cp4.1LG13g01760 vs. ExPASy TrEMBL
Match: A0A6J1I120 (protein P21-like OS=Cucurbita maxima OX=3661 GN=LOC111468913 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.03e-06
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 13 SCEYLFFFYLFFLFVPTSMRLSVKYATIVSSLFGHNCLFTLWAAVVPGGGRQLNQTDV 70
          +C + FFF LF      S    +KYA   +    +NC FT+WAA VPGGGR+LN+ +V
Sbjct: 30 NCPFTFFFLLF------STLFCLKYADAATFEVRNNCPFTVWAAAVPGGGRRLNRNEV 81

BLAST of Cp4.1LG13g01760 vs. ExPASy TrEMBL
Match: A0A6J1DZ28 (thaumatin-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111025921 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.14e-06
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 22 LFFLFVPTSMRLSVKYATIVSSLFGHNCLFTLWAAVVPGGGRQLNQTDV 70
          +FFLF  +S  L   +    +    +NC FT+WAA VPGGGRQLN+ DV
Sbjct: 6  IFFLFFLSSFSLFSSHTHAATFEIRNNCGFTVWAAAVPGGGRQLNRNDV 54

BLAST of Cp4.1LG13g01760 vs. ExPASy TrEMBL
Match: A0A6J1E5T0 (uncharacterized protein LOC111430220 OS=Cucurbita moschata OX=3662 GN=LOC111430220 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.35e-05
Identity = 20/24 (83.33%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 47 HNCLFTLWAAVVPGGGRQLNQTDV 70
          +NC+FT+WAA VPGGGRQLNQTDV
Sbjct: 64 NNCVFTVWAAAVPGGGRQLNQTDV 87

BLAST of Cp4.1LG13g01760 vs. ExPASy TrEMBL
Match: A0A2H5P7S6 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_111570 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.83e-05
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 19 FFYLFFLFVPTSMRLSVKYATIVSSLFGHNCLFTLWAAVVPGGGRQLNQ 67
          +F +FFLF+  S   S   AT       +NC FT+WAA VPGGGRQLN+
Sbjct: 6  YFLIFFLFISLSSLTSTHGATFE---IRNNCPFTVWAAAVPGGGRQLNR 51

BLAST of Cp4.1LG13g01760 vs. ExPASy TrEMBL
Match: A0A6J1E396 (protein P21-like OS=Cucurbita moschata OX=3662 GN=LOC111430188 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.59e-05
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 22 LFFLFVPTSMRLSVKYATIVSSLFGHNCLFTLWAAVVPGGGRQLNQTDV 70
          +FFL   T     VKYA   +    +NC FT+WAA VPGGGR+LN+ +V
Sbjct: 5  IFFLLCSTLF--CVKYADAATFKVRNNCPFTVWAAAVPGGGRRLNRNEV 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7016954.13.20e-0691.67Thaumatin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022969830.16.26e-0644.83protein P21-like [Cucurbita maxima][more]
XP_022159533.11.47e-0548.98thaumatin-like protein 1 [Momordica charantia][more]
XP_022922158.12.78e-0583.33uncharacterized protein LOC111430220 [Cucurbita moschata][more]
GAY48426.13.78e-0551.02hypothetical protein CUMW_111570 [Citrus unshiu][more]
Match NameE-valueIdentityDescription
A0A6J1I1203.03e-0644.83protein P21-like OS=Cucurbita maxima OX=3661 GN=LOC111468913 PE=3 SV=1[more]
A0A6J1DZ287.14e-0648.98thaumatin-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111025921 PE=3 SV=... [more]
A0A6J1E5T01.35e-0583.33uncharacterized protein LOC111430220 OS=Cucurbita moschata OX=3662 GN=LOC1114302... [more]
A0A2H5P7S61.83e-0551.02Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_111570 PE=4 SV=1[more]
A0A6J1E3966.59e-0548.98protein P21-like OS=Cucurbita moschata OX=3662 GN=LOC111430188 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g01760.1Cp4.1LG13g01760.1mRNA