Cp4.1LG13g01220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACCCATTCTCCAGAAAATTTTGGAATTTGCGGAAACCTATTCTAATAGGCGCGGCATTGTTTTCGATTCCTTGTTGATTTCCGCCATGGATGAACATCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTTGGTTTGCTTAATTGCGTTACGGAGTCTCCCTTCGATCAACAGAAATGCTACTGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGGTTGTCATTCCCTCTCTTCAATTTTCCCTATGACTTGTTTGTTTATTTCCATGTTCTTGTAATCAATTGGTGCTGTTTATTGAATTTTCGAATTAGGTCGTCTAGCTCTCGGAATAGGATTTGCCGAGTATTTGTTGAAATTTTGTTGCGTTGTTCTCATCGGAGTTCAAATTGTGATTCACTTATTATGTTTGGATTGAAATAGTTCTTTAAGTGTTCTGGAATGACATTTGATTTCATGCGAATTTTCTTTGAATCGTTCCTTCGACAGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAAGAATGCTTGAAGGAATTTTGTAAGAGAAGGATATTGTTCATCTTAAAGTAAGTTCTGTTGTTGATTGTATTTGAAGTCTTCCATTTCTAGGAGATATTTATACCTTTCCTTCCAATTTACTGAGAATTGAATTCTATCAAAAGAGTGACCATTGAGTTCATCAATAAATTGTGTTACTGAAATCTCAAAGATTCGTCTATTCCCCTTTCTATCAGGTTCTTCTAACAAATCCATCCCTCTCATTACTCAGCTATATACTTAGAACGAATTTCTTGAGAAAAACATTAGTTATCCCAAGAAGCTTATCTAGATCAAACTTGTTTCATTTATAATTTTGTAAGTGTAGGGATCAAATAGACACAAACCTCAAATCTTAGAGAGATTTATCAAAAATAGGCATAAGCATTAAACAGCAAGCATTCAAATTAGAGGTTTGAAAGTTTGTAGTCCAAAAAGATAGTCTGCATTATGATTGCATTCTTCTACATGTAAAGCTCAGTTCTTGACATTAAACNAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGACAAATTCTTGAACCCCATGTTCAAATTCCAGCTCTGTGATATCTGAATCTAGTTATTTTGTGGATGAAATTTAGAAACTGATAGAAAGGTCGGCTGAATGGATAATGTAAGTGAGCACCAAGGCCAACAGCATCAGTACATAGGCAATCCCCTGGTCTATGCTTGTCCCTGCAAATTAGCATAACAATAATTGTCATCATTTATGAAATTCATAGGTGGAGAACTTGAAAATCATGATTCAAATGAGGAGGAAAAGAAGAAGAAGAAGAACTAACCATCGCTAGCAGCAGGAGGTTGGGCCGGAGCCAGAGATTGAGCACAAGCAGGGAGAAGCATAGCCAAAACAAAAACAACACCAATGAAGACGCCAAAGGGGATCTTATTAGCAACGACCGCCATTGTTGAAGGAAGAAGAAACTTCTAGGTGAAAAAAACAAAGGTAATTGAAATGGAAGAACGAAATCTCTCTCTGCAACGTCTCTCAGAAATGGAAGAAGTTGAGACGAAACCTCCTGCAGGGGCTCCGGAGAGCCGCAGCAGAGAGAGATTAAATAGGCCGAGTGATGATTTGAAGCTGTCAAAAGGGAGGGGTGGTTGAGGGCCACCGGCCAGTTGACAGTTCCGGAGACAGCGACGACGGCGTGGCAATGGCGGTGTGGCTCTCAATCAAATGAGGCTCTGGATTTTATAGCGCCCATTTGGTCTCAGGCCTTATCGTTGCAACTGCAATGGCATGTAAATCGCTGGTTTCAAAGCTTCTTTTTTGGGGGTTTGTTTGAAATGGTCAATGGGCTTCATTTGGATTCTCATGGTTCGTTTTTCTGTTTTTTTCCTCCCTCTTTCCATTATTTTAGACGTCCATCCTGAATTTTGCCATTTATTTTCTAAATATTTCTGGTTAATTACAATATCTTAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTGTATATTATATATTAAANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCATTG AACCCATTCTCCAGAAAATTTTGGAATTTGCGGAAACCTATTCTAATAGGCGCGGCATTGTTTTCGATTCCTTGTTGATTTCCGCCATGGATGAACATCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTTGGTTTGCTTAATTGCGTTACGGAGTCTCCCTTCGATCAACAGAAATGCTACTGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAAGAATGCTTGAAGGAATTTTGTAAGAGAAGGATATTGTTCATCTTAAAGTGGAGAACTTGAAAATCATGATTCAAATGAGGAGGAAAAGAAGAAGAAGAAGAACTAACCATCGCTAGCAGCAGGAGGTTGGGCCGGAGCCAGAGATTGAGCACAAGCAGGGAGAAGCATAGCCAAAACAAAAACAACACCAATGAAGACGCCAAAGGGGATCTTATTAGCAACGACCGCCATTGTTGAAGGAAGAAGAAACTTCTAGGTGAAAAAAACAAAGGTAATTGAAATGGAAGAACGAAATCTCTCTCTGCAACGTCTCTCAGAAATGGAAGAAGTTGAGACGAAACCTCCTGCAGGGGCTCCGGAGAGCCGCAGCAGAGAGAGATTAAATAGGCCGAGTGATGATTTGAAGCTGTCAAAAGGGAGGGGTGGTTGAGGGCCACCGGCCAGTTGACAGTTCCGGAGACAGCGACGACGGCGTGGCAATGGCGGTGTGGCTCTCAATCAAATGAGGCTCTGGATTTTATAGCGCCCATTTGGTCTCAGGCCTTATCGTTGCAACTGCAATGGCATGTAAATCGCTGGTTTCAAAGCTTCTTTTTTGGGGGTTTGTTTGAAATGGTCAATGGGCTTCATTTGGATTCTCATGGTTCGTTTTTCTGTTTTTTTCCTCCCTCTTTCCATTATTTTAGACGTCCATCCTGAATTTTGCCATTTATTTTCTAAATATTTCTGGTTAATTACAATATCTTAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTGTATATTATATATTAAANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCATTG ATGGATGAACATCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTTGGTTTGCTTAATTGCGTTACGGAGTCTCCCTTCGATCAACAGAAATGCTACTGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAAGAATGCTTGA MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQTKQMKKNA Homology
BLAST of Cp4.1LG13g01220 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus]) HSP 1 Score: 105 bits (263), Expect = 2.99e-28 Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0
BLAST of Cp4.1LG13g01220 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa]) HSP 1 Score: 103 bits (258), Expect = 1.73e-27 Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0
BLAST of Cp4.1LG13g01220 vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 103 bits (256), Expect = 4.22e-27 Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = 0
BLAST of Cp4.1LG13g01220 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 100 bits (249), Expect = 4.09e-26 Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 0
BLAST of Cp4.1LG13g01220 vs. NCBI nr
Match: KAF5734209.1 (hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii]) HSP 1 Score: 92.0 bits (227), Expect = 9.54e-23 Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Cp4.1LG13g01220 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1) HSP 1 Score: 105 bits (263), Expect = 1.45e-28 Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0
BLAST of Cp4.1LG13g01220 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1) HSP 1 Score: 103 bits (258), Expect = 8.38e-28 Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0
BLAST of Cp4.1LG13g01220 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 4.62e-23 Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 0
BLAST of Cp4.1LG13g01220 vs. ExPASy TrEMBL
Match: A0A2C9WJ58 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G046100 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.20e-21 Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 0
BLAST of Cp4.1LG13g01220 vs. ExPASy TrEMBL
Match: A0A061GD02 (Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 4.44e-21 Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0
BLAST of Cp4.1LG13g01220 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein ) HSP 1 Score: 81.3 bits (199), Expect = 3.2e-16 Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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