Cp4.1LG13g01220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG13g01220
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionCox19-like CHCH family protein
LocationCp4.1LG13: 853719 .. 855878 (-)
RNA-Seq ExpressionCp4.1LG13g01220
SyntenyCp4.1LG13g01220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCCATTCTCCAGAAAATTTTGGAATTTGCGGAAACCTATTCTAATAGGCGCGGCATTGTTTTCGATTCCTTGTTGATTTCCGCCATGGATGAACATCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTTGGTTTGCTTAATTGCGTTACGGAGTCTCCCTTCGATCAACAGAAATGCTACTGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGGTTGTCATTCCCTCTCTTCAATTTTCCCTATGACTTGTTTGTTTATTTCCATGTTCTTGTAATCAATTGGTGCTGTTTATTGAATTTTCGAATTAGGTCGTCTAGCTCTCGGAATAGGATTTGCCGAGTATTTGTTGAAATTTTGTTGCGTTGTTCTCATCGGAGTTCAAATTGTGATTCACTTATTATGTTTGGATTGAAATAGTTCTTTAAGTGTTCTGGAATGACATTTGATTTCATGCGAATTTTCTTTGAATCGTTCCTTCGACAGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAAGAATGCTTGAAGGAATTTTGTAAGAGAAGGATATTGTTCATCTTAAAGTAAGTTCTGTTGTTGATTGTATTTGAAGTCTTCCATTTCTAGGAGATATTTATACCTTTCCTTCCAATTTACTGAGAATTGAATTCTATCAAAAGAGTGACCATTGAGTTCATCAATAAATTGTGTTACTGAAATCTCAAAGATTCGTCTATTCCCCTTTCTATCAGGTTCTTCTAACAAATCCATCCCTCTCATTACTCAGCTATATACTTAGAACGAATTTCTTGAGAAAAACATTAGTTATCCCAAGAAGCTTATCTAGATCAAACTTGTTTCATTTATAATTTTGTAAGTGTAGGGATCAAATAGACACAAACCTCAAATCTTAGAGAGATTTATCAAAAATAGGCATAAGCATTAAACAGCAAGCATTCAAATTAGAGGTTTGAAAGTTTGTAGTCCAAAAAGATAGTCTGCATTATGATTGCATTCTTCTACATGTAAAGCTCAGTTCTTGACATTAAACNAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGACAAATTCTTGAACCCCATGTTCAAATTCCAGCTCTGTGATATCTGAATCTAGTTATTTTGTGGATGAAATTTAGAAACTGATAGAAAGGTCGGCTGAATGGATAATGTAAGTGAGCACCAAGGCCAACAGCATCAGTACATAGGCAATCCCCTGGTCTATGCTTGTCCCTGCAAATTAGCATAACAATAATTGTCATCATTTATGAAATTCATAGGTGGAGAACTTGAAAATCATGATTCAAATGAGGAGGAAAAGAAGAAGAAGAAGAACTAACCATCGCTAGCAGCAGGAGGTTGGGCCGGAGCCAGAGATTGAGCACAAGCAGGGAGAAGCATAGCCAAAACAAAAACAACACCAATGAAGACGCCAAAGGGGATCTTATTAGCAACGACCGCCATTGTTGAAGGAAGAAGAAACTTCTAGGTGAAAAAAACAAAGGTAATTGAAATGGAAGAACGAAATCTCTCTCTGCAACGTCTCTCAGAAATGGAAGAAGTTGAGACGAAACCTCCTGCAGGGGCTCCGGAGAGCCGCAGCAGAGAGAGATTAAATAGGCCGAGTGATGATTTGAAGCTGTCAAAAGGGAGGGGTGGTTGAGGGCCACCGGCCAGTTGACAGTTCCGGAGACAGCGACGACGGCGTGGCAATGGCGGTGTGGCTCTCAATCAAATGAGGCTCTGGATTTTATAGCGCCCATTTGGTCTCAGGCCTTATCGTTGCAACTGCAATGGCATGTAAATCGCTGGTTTCAAAGCTTCTTTTTTGGGGGTTTGTTTGAAATGGTCAATGGGCTTCATTTGGATTCTCATGGTTCGTTTTTCTGTTTTTTTCCTCCCTCTTTCCATTATTTTAGACGTCCATCCTGAATTTTGCCATTTATTTTCTAAATATTTCTGGTTAATTACAATATCTTAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTGTATATTATATATTAAANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCATTG

mRNA sequence

AACCCATTCTCCAGAAAATTTTGGAATTTGCGGAAACCTATTCTAATAGGCGCGGCATTGTTTTCGATTCCTTGTTGATTTCCGCCATGGATGAACATCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTTGGTTTGCTTAATTGCGTTACGGAGTCTCCCTTCGATCAACAGAAATGCTACTGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAAGAATGCTTGAAGGAATTTTGTAAGAGAAGGATATTGTTCATCTTAAAGTGGAGAACTTGAAAATCATGATTCAAATGAGGAGGAAAAGAAGAAGAAGAAGAACTAACCATCGCTAGCAGCAGGAGGTTGGGCCGGAGCCAGAGATTGAGCACAAGCAGGGAGAAGCATAGCCAAAACAAAAACAACACCAATGAAGACGCCAAAGGGGATCTTATTAGCAACGACCGCCATTGTTGAAGGAAGAAGAAACTTCTAGGTGAAAAAAACAAAGGTAATTGAAATGGAAGAACGAAATCTCTCTCTGCAACGTCTCTCAGAAATGGAAGAAGTTGAGACGAAACCTCCTGCAGGGGCTCCGGAGAGCCGCAGCAGAGAGAGATTAAATAGGCCGAGTGATGATTTGAAGCTGTCAAAAGGGAGGGGTGGTTGAGGGCCACCGGCCAGTTGACAGTTCCGGAGACAGCGACGACGGCGTGGCAATGGCGGTGTGGCTCTCAATCAAATGAGGCTCTGGATTTTATAGCGCCCATTTGGTCTCAGGCCTTATCGTTGCAACTGCAATGGCATGTAAATCGCTGGTTTCAAAGCTTCTTTTTTGGGGGTTTGTTTGAAATGGTCAATGGGCTTCATTTGGATTCTCATGGTTCGTTTTTCTGTTTTTTTCCTCCCTCTTTCCATTATTTTAGACGTCCATCCTGAATTTTGCCATTTATTTTCTAAATATTTCTGGTTAATTACAATATCTTAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTGTATATTATATATTAAANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCATTG

Coding sequence (CDS)

ATGGATGAACATCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTTGGTTTGCTTAATTGCGTTACGGAGTCTCCCTTCGATCAACAGAAATGCTACTGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAAGAATGCTTGA

Protein sequence

MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQTKQMKKNA
Homology
BLAST of Cp4.1LG13g01220 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus])

HSP 1 Score: 105 bits (263), Expect = 2.99e-28
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1  MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQTKQ 60
          MDE + QPVCAQEAL LLNCVTESPFDQ+KCY LLHSLRECV+SKKVKKFSLA+EEQTK 
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 M-KKNA 65
          + KKNA
Sbjct: 61 IIKKNA 66

BLAST of Cp4.1LG13g01220 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 1.73e-27
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQTKQ 60
          MDE + QPVCAQEAL LLNCVTESPFDQ KCY LLHSLRECV+SKKVKKFSLA+EEQTK 
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 M-KKNA 65
          + KKN+
Sbjct: 61 IVKKNS 66

BLAST of Cp4.1LG13g01220 vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (256), Expect = 4.22e-27
Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1  MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQTKQ 60
          M E RSQPVCAQEAL LLNCVTESPFDQQKCY LLHSLRECVISKK   FSLADEEQTKQ
Sbjct: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVISKK---FSLADEEQTKQ 71

Query: 61 MK 62
          MK
Sbjct: 73 MK 71

BLAST of Cp4.1LG13g01220 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100 bits (249), Expect = 4.09e-26
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 0

Query: 1  MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQTK 59
          MD+ ++QPVCAQEAL LLNCVT+SPFDQ+KCY LLHSLRECV+SKKVKKFSLADEE+ K
Sbjct: 1  MDDAQAQPVCAQEALDLLNCVTDSPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAK 59

BLAST of Cp4.1LG13g01220 vs. NCBI nr
Match: KAF5734209.1 (hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii])

HSP 1 Score: 92.0 bits (227), Expect = 9.54e-23
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEE 56
          MDE R++PVCAQEAL LLNCVT+SPFDQ+KC  LL+SLRECV++KKVKKFSLAD+E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

BLAST of Cp4.1LG13g01220 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 1.45e-28
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1  MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQTKQ 60
          MDE + QPVCAQEAL LLNCVTESPFDQ+KCY LLHSLRECV+SKKVKKFSLA+EEQTK 
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 M-KKNA 65
          + KKNA
Sbjct: 61 IIKKNA 66

BLAST of Cp4.1LG13g01220 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 8.38e-28
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQTKQ 60
          MDE + QPVCAQEAL LLNCVTESPFDQ KCY LLHSLRECV+SKKVKKFSLA+EEQTK 
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 M-KKNA 65
          + KKN+
Sbjct: 61 IVKKNS 66

BLAST of Cp4.1LG13g01220 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.62e-23
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEE 56
          MDE R++PVCAQEAL LLNCVT+SPFDQ+KC  LL+SLRECV++KKVKKFSLAD+E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

BLAST of Cp4.1LG13g01220 vs. ExPASy TrEMBL
Match: A0A2C9WJ58 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G046100 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.20e-21
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1  MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQ 57
          M+E R++PVCAQEAL LLNCV +SP+DQ+KC  LL +LRECV++KKVKKFSLAD++Q
Sbjct: 1  MEEERAKPVCAQEALDLLNCVAQSPYDQEKCVLLLQALRECVLNKKVKKFSLADQDQ 57

BLAST of Cp4.1LG13g01220 vs. ExPASy TrEMBL
Match: A0A061GD02 (Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.44e-21
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 1  MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQ 57
          M+E  +QPVCAQEAL LLNCVT+SPFDQ+KC  LLHSLR+CV+ KKVKKFSL +++Q
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

BLAST of Cp4.1LG13g01220 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein )

HSP 1 Score: 81.3 bits (199), Expect = 3.2e-16
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0

Query: 1   MDEHRSQPVCAQEALGLLNCVTESPFDQQKCYCLLHSLRECVISKKVKKFSLADEEQTKQ 60
           M++  +QP+C QEAL LLNCV ESPFDQ+KC   L SLRECV+SKKVKKFS+  ++   +
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQDHDSE 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN50036.12.99e-2883.33hypothetical protein Csa_000619 [Cucumis sativus][more]
KAA0042698.11.73e-2781.82Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like... [more]
KAG7017003.14.22e-2788.71hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6606053.14.09e-2681.36hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF5734209.19.54e-2378.57hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
A0A0A0KQS71.45e-2883.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1[more]
A0A5D3C4E28.38e-2881.82Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A7J7CJI74.62e-2378.57Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 ... [more]
A0A2C9WJ582.20e-2170.18Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G046100 PE=4 SV=... [more]
A0A061GD024.44e-2171.93Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT4G23760.13.2e-1660.00Cox19-like CHCH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37750COX19-LIKE CHCH FAMILY PROTEINcoord: 1..62
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 7..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g01220.1Cp4.1LG13g01220.1mRNA