Cp4.1LG13g00800 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g00800
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG13: 535606 .. 536712 (-)
RNA-Seq Expression	Cp4.1LG13g00800
Synteny	Cp4.1LG13g00800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATGGGCCCTTATGTGAAATTTCCACCTGAAAGTTGAAGTTTGAAATTTTGCGGATTTATTGGTTAGCCTTGGCATGATTGCTAAAAAAGTCTTGACCAAAGGGCAAGCAAGGAGCGTTGTCGGCATGAGTATGCACATAACAAGGCCGAAAGGGATATTGCAACCAACTTGAATTGATGTTGCATGTATGGTTCAGAAAACAACTTTCACAACACAAAGCAGGTTGGTAGTGCTTTTGAGGCGACAGTTTTATTTATTATTTTCCACTATTCTTTTCAACTCATCGGCTCCAACCAAGAAAGTAAACACTCATATAATATCTTTTGTTATATCAATAATTTTAATGTTTGACAAGGAAGGTCTATCAAACATTAATACAAAATTTGACTATTGTATACTTATCTTATCCTAAGCGTCTTCTTCTTGCTTTCATTGGGGAAGAATTTTCCATCCATAATTTTTTATTTTTGGGTAAAGGACCATGGCATTTCTTATCTGACACAATATTCTCCTATGTCTTTGGTTGATTTTATTTAGGGGACTGGAGGAGGTTCTACATCTCAAAGGAGCCATGATGCTAAATTTTCCAAGTTATCTTTTATTATGGTAAGAAAAAAAAAAAAGCTAAATTTTTTAGAAGTTTATCTGGTCCTACCTTTCTCATAATAGTGTCTTGAGCATCCTATACCTATCTCTTCCTCGCTAAAAAGGAAAGTTAGATACCATTTTTAGCATTTAGGTGGCATGGACTCCTGTGGGGGTCAGTTAAATTGGCTTCCCAAACATATTCTGACGTGTTTTGATTCAACCCATAGTTACTATTAGTATTGGGAATGATGTCATGTGCTACCTTGTCGGATTCGTCAAGTTGTATGCCACTGGCATCCTTATCTGGTACACCTGAAAATGTTCTTTCTCCCCACATTCACAGTTCTAAAAGGTTCAAAGCTGAGAGAGGATTAGATGAGATAAATGTAAAAACTTGAAGATGTTTGTTTTGTACATTTGTAGATATGATATTTCTTTAGGCCCTTCAATGCTCTTCATTTCAATAAAGTTTCTTCAAGATTTACCCATGAGAGAAAGATTGTCCGTGTAGGTCTT

mRNA sequence

AGAATGGGCCCTTATGTGAAATTTCCACCTGAAAGTTGAAGTTTGAAATTTTGCGGATTTATTGGTTAGCCTTGGCATGATTGCTAAAAAAGTCTTGACCAAAGGGCAAGCAAGGAGCGTTGTCGGCATGAGTATGCACATAACAAGGCCGAAAGGGATATTGCAACCAACTTGAATTGATGTTGCATGTATGGTTCAGAAAACAACTTTCACAACACAAAGCAGGGGACTGGAGGAGGTTCTACATCTCAAAGGAGCCATGATGCTAAATTTTCCAAGTTATCTTTTATTATGGTAAGAAAAAAAAAAAAGCTAAATTTTTTAGAAGTTTATCTGGTCCTACCTTTCTCATAATAGTGTCTTGAGCATCCTATACCTATCTCTTCCTCGCTAAAAAGGAAAGTTAGATACCATTTTTAGCATTTAGGTGGCATGGACTCCTGTGGGGGTCAGTTAAATTGGCTTCCCAAACATATTCTGACGTGTTTTGATTCAACCCATAGTTACTATTAGTATTGGGAATGATGTCATGTGCTACCTTGTCGGATTCGTCAAGTTGTATGCCACTGGCATCCTTATCTGGTACACCTGAAAATGTTCTTTCTCCCCACATTCACAGTTCTAAAAGGTTCAAAGCTGAGAGAGGATTAGATGAGATAAATGTAAAAACTTGAAGATGTTTGTTTTGTACATTTGTAGATATGATATTTCTTTAGGCCCTTCAATGCTCTTCATTTCAATAAAGTTTCTTCAAGATTTACCCATGAGAGAAAGATTGTCCGTGTAGGTCTT

Coding sequence (CDS)

ATGTATGGTTCAGAAAACAACTTTCACAACACAAAGCAGGGGACTGGAGGAGGTTCTACATCTCAAAGGAGCCATGATGCTAAATTTTCCAAGTTATCTTTTATTATGGTAAGAAAAAAAAAAAAGCTAAATTTTTTAGAAGTTTATCTGGTCCTACCTTTCTCATAA

Protein sequence

MYGSENNFHNTKQGTGGGSTSQRSHDAKFSKLSFIMVRKKKKLNFLEVYLVLPFS

Homology

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BLAST of Cp4.1LG13g00800 vs. NCBI nr
Match: KAG7017109.1 (hypothetical protein SDJN02_22221, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 47.4 bits (111), Expect = 3.48e-04
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 14  GTGGGSTSQRSHDAKFSKLSFIMVRKKKKLN 44
           GTGGGS SQRSHDAKFSKLSFIM  K   LN
Sbjct: 826 GTGGGSRSQRSHDAKFSKLSFIMGLKNINLN 856

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g00800 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g00800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017109.1	3.48e-04	80.65	hypothetical protein SDJN02_22221, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG13g00800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g00800 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g00800.1	Cp4.1LG13g00800.1	mRNA