Cp4.1LG13g00550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g00550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Protein of unknown function (DUF565)
Location	Cp4.1LG13: 408508 .. 408975 (+)
RNA-Seq Expression	Cp4.1LG13g00550
Synteny	Cp4.1LG13g00550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAATCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGGCCATCCCCTCGTAGTCTCTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGGCTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGAGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

mRNA sequence

ATGGCACAATCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGGCCATCCCCTCGTAGTCTCTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGGCTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGAGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Coding sequence (CDS)

ATGGCACAATCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGGCCATCCCCTCGTAGTCTCTGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGGCTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGAGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Protein sequence

MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

Homology

[Close]

BLAST of Cp4.1LG13g00550 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 79  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK-VTFPVALLNN 138
           G ISLL GF+++  +S   G  G   +IAA + V  TE  ++  YS  K +   + L NN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTSKIVYSSHKQLNIKINLFNN 90

Query: 139 FKMGFTYGLFIDAFKLAS 156
           FK+G TYGLF+DAFKL S
Sbjct: 91  FKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Cp4.1LG13g00550 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 53  RLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCV 112
           RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 113 LLTEYVTRFYYSR--PKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           L  E V R++Y R          +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of Cp4.1LG13g00550 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.6e-08
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 79  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPVALLNN 138
           G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    + LLNN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNN 90

Query: 139 FKMGFTYGLFIDAFKLAS 156
            K+G TYGLF+DAFKL S
Sbjct: 91  LKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Cp4.1LG13g00550 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04
Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 83  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR----PKVTFPVALL--- 142
           LL GF++A  ++  FG  G  DV+ A + V + E +    YS+     K  F ++ L   
Sbjct: 35  LLLGFFIATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLI 94

Query: 143 --NNFKMGFTYGLFIDAFKLAS 156
             N  K+G  +GLF+DAFKL S
Sbjct: 95  GINYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of Cp4.1LG13g00550 vs. NCBI nr
Match: XP_023549885.1 (uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886.1 uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306 bits (785), Expect = 4.81e-105
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. NCBI nr
Match: XP_022928979.1 (uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacterized protein ycf20 [Cucurbita moschata])

HSP 1 Score: 306 bits (783), Expect = 9.70e-105
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. NCBI nr
Match: KAG6579671.1 (hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305 bits (782), Expect = 1.38e-104
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MAQSASLVSTGLLNYAFTPQKNASYWRYD+IKSRPSPRSLCIKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. NCBI nr
Match: XP_022969949.1 (uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized protein ycf20 [Cucurbita maxima])

HSP 1 Score: 301 bits (771), Expect = 6.56e-103
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSL IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. NCBI nr
Match: KAG7017120.1 (putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295 bits (754), Expect = 7.67e-99
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 7   LVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISR 66
           +VSTGLLNYAFTPQKNASYWRYD+IKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISR
Sbjct: 106 VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISR 165

Query: 67  NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 126
           NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP
Sbjct: 166 NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 225

Query: 127 KVTFPVALLNNFKMGFTYGLFIDAFKLAS 155
           KVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 226 KVTFPVALLNNFKMGFTYGLFIDAFKLAS 254

[Close]

BLAST of Cp4.1LG13g00550 vs. ExPASy TrEMBL
Match: A0A6J1ESY7 (uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3 SV=1)

HSP 1 Score: 306 bits (783), Expect = 4.70e-105
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. ExPASy TrEMBL
Match: A0A6J1I440 (uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 SV=1)

HSP 1 Score: 301 bits (771), Expect = 3.18e-103
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60
           MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSL IKAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155
           FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Cp4.1LG13g00550 vs. ExPASy TrEMBL
Match: A0A0A0KPS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1)

HSP 1 Score: 281 bits (719), Expect = 2.80e-95
Identity = 142/156 (91.03%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLCIKAVQDTGGPRRLVDIIR 60
           MAQSASLV T LLNY FTP+ N SYWRYD++KSRPSP RS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Cp4.1LG13g00550 vs. ExPASy TrEMBL
Match: A0A1S3CT33 (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=3 SV=1)

HSP 1 Score: 277 bits (709), Expect = 9.36e-94
Identity = 140/156 (89.74%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLCIKAVQDTGGPRRLVDIIR 60
           MAQS SLV TGLLNY F+ + N+SYWRYD++KSRPSP RS  +KAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155
           RFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Cp4.1LG13g00550 vs. ExPASy TrEMBL
Match: A0A5D3BMH1 (Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00540 PE=3 SV=1)

HSP 1 Score: 252 bits (643), Expect = 5.48e-84
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 22  NASYWRYDVIKSRPSP-RSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGG 81
           N SYWRYD++KSRPSP RS  +KAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGG
Sbjct: 2   NPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGG 61

Query: 82  ISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKM 141
           ISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKM
Sbjct: 62  ISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKM 121

Query: 142 GFTYGLFIDAFKLAS 155
           GFTYGLFIDAFKLAS
Sbjct: 122 GFTYGLFIDAFKLAS 136

[Close]

BLAST of Cp4.1LG13g00550 vs. TAIR 10
Match: AT5G43050.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-52
Identity = 110/158 (69.62%), Postives = 124/158 (78.48%), Query Frame = 0


Query: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPR-SLCIKAVQDTGG--PRRLVDI 60
           MA S S +ST L +      +  S+  +     +   R +  I+A+Q+T G  PRRL+DI
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTFVSSPFKRKRRFARSIRALQETEGPTPRRLIDI 60

Query: 61  IRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEY 120
           IR VPEISRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEY
Sbjct: 61  IRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 120

Query: 121 VTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 156
           VTRFYYSR  VTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 VTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

[Close]

BLAST of Cp4.1LG13g00550 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 43.9 bits (102), Expect = 1.4e-04
Identity = 29/80 (36.25%), Postives = 39/80 (48.75%), Query Frame = 0


Query: 83  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP-------KVTFPVALL 142
           LL GFY A  ++   G  G  DV+ A + V   E +    Y +P       K+   V  +
Sbjct: 118 LLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFM 177

Query: 143 NNFKMGFTYGLFIDAFKLAS 156
           N +K G   GLF+DAFKL S
Sbjct: 178 NFWKAGVCLGLFVDAFKLGS 197

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g00550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1XDS2	1.5e-08	46.15	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P72983	2.6e-08	35.24	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P51214	7.6e-08	46.15	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
Q9MUL5	3.9e-04	36.59	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]

BLAST of Cp4.1LG13g00550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549885.1	4.81e-105	100.00	uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886....	[more]
XP_022928979.1	9.70e-105	99.35	uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacteriz...	[more]
KAG6579671.1	1.38e-104	99.35	hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022969949.1	6.56e-103	98.71	uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized...	[more]
KAG7017120.1	7.67e-99	98.66	putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial ...	[more]

BLAST of Cp4.1LG13g00550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESY7	4.70e-105	99.35	uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3...	[more]
A0A6J1I440	3.18e-103	98.71	uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 S...	[more]
A0A0A0KPS1	2.80e-95	91.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1	[more]
A0A1S3CT33	9.36e-94	89.74	uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644...	[more]
A0A5D3BMH1	5.48e-84	93.33	Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Cp4.1LG13g00550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43050.1	2.3e-52	69.62	Protein of unknown function (DUF565)	[more]
AT1G65420.1	1.4e-04	36.25	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 101..155 e-value: 1.3E-18 score: 67.1
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..155
None	No IPR available	PANTHER	PTHR33787:SF5	YCF20-LIKE PROTEIN	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g00550.1	Cp4.1LG13g00550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane