Cp4.1LG13g00350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g00350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	PARP catalytic domain-containing protein
Location	Cp4.1LG13: 240492 .. 240869 (-)
RNA-Seq Expression	Cp4.1LG13g00350
Synteny	Cp4.1LG13g00350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAAGGGTGGTGGCGTGTTGGCGTGTGAGCCTAATTTCTGTCGACTTTCCTTCTTCTTCATGCAAATATATAAACCATTTCTTGTTCTCCCTGAATCAAAATCGGCTCTGTTTTCTCTTCCCATGGCGGCCACTCTCTGCAACAATGTCTCCAACGCCTCGCTTGTGTTCGTCTTCCTCCTCACTCTGCTTCTTGGCTTCTCCTCTGCAAGGCCAGCTCCGGCGACAATGGCCGGAACAAGCTTCTTTCCGGCACCCAACACCGCCTTCCGGTTCCACCATCAAGTCTTCAGCTTCCTCCCCAAAGGGACTCCGATTCCGCCGTCCGCACCCTCCAAGAGACACAACTCCGTGGTCGACCAAATTGGTGTCTGA

mRNA sequence

ATGTCCAAGGGTGGTGGCGTGTTGGCGTGTGAGCCTAATTTCTGTCGACTTTCCTTCTTCTTCATGCAAATATATAAACCATTTCTTGTTCTCCCTGAATCAAAATCGGCTCTGTTTTCTCTTCCCATGGCGGCCACTCTCTGCAACAATGTCTCCAACGCCTCGCTTGTGTTCGTCTTCCTCCTCACTCTGCTTCTTGGCTTCTCCTCTGCAAGGCCAGCTCCGGCGACAATGGCCGGAACAAGCTTCTTTCCGGCACCCAACACCGCCTTCCGGTTCCACCATCAAGTCTTCAGCTTCCTCCCCAAAGGGACTCCGATTCCGCCGTCCGCACCCTCCAAGAGACACAACTCCGTGGTCGACCAAATTGGTGTCTGA

Coding sequence (CDS)

ATGTCCAAGGGTGGTGGCGTGTTGGCGTGTGAGCCTAATTTCTGTCGACTTTCCTTCTTCTTCATGCAAATATATAAACCATTTCTTGTTCTCCCTGAATCAAAATCGGCTCTGTTTTCTCTTCCCATGGCGGCCACTCTCTGCAACAATGTCTCCAACGCCTCGCTTGTGTTCGTCTTCCTCCTCACTCTGCTTCTTGGCTTCTCCTCTGCAAGGCCAGCTCCGGCGACAATGGCCGGAACAAGCTTCTTTCCGGCACCCAACACCGCCTTCCGGTTCCACCATCAAGTCTTCAGCTTCCTCCCCAAAGGGACTCCGATTCCGCCGTCCGCACCCTCCAAGAGACACAACTCCGTGGTCGACCAAATTGGTGTCTGA

Protein sequence

MSKGGGVLACEPNFCRLSFFFMQIYKPFLVLPESKSALFSLPMAATLCNNVSNASLVFVFLLTLLLGFSSARPAPATMAGTSFFPAPNTAFRFHHQVFSFLPKGTPIPPSAPSKRHNSVVDQIGV

Homology

[Close]

BLAST of Cp4.1LG13g00350 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 27/70 (38.57%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 55  SLVFVFLLTLLLGFSSARPAPATMAGTSFFPAPNTAFRF-HHQVFSFLPKGTPIPPSAPS 114
           +++ +    L L  SS+  A A +  T           F +  +F +LPKG PIPPSAPS
Sbjct: 6   TMMVLLCFVLFLAASSSCVAAARIGATMEMKKNIKRLTFKNSHIFGYLPKGVPIPPSAPS 65

Query: 115 KRHNSVVDQI 124
           KRHNS V+ +
Sbjct: 66  KRHNSFVNSL 75

[Close]

BLAST of Cp4.1LG13g00350 vs. NCBI nr
Match: KAG6579701.1 (hypothetical protein SDJN03_24149, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238 bits (606), Expect = 1.02e-78
Identity = 119/125 (95.20%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSKGGGVLACEPNFCRLSFFFMQIYKPFLVLPESKSALFSLPMAATLCNNVSNASLVFVF 60
           MS GGGVLACEPNFCRLSFFFMQI KPFL LP+SKSALFSLPMAATLCNNVSNASL+F F
Sbjct: 1   MSNGGGVLACEPNFCRLSFFFMQINKPFLRLPKSKSALFSLPMAATLCNNVSNASLLFFF 60

Query: 61  LLTLLLGFSSARPAPATMAGTSFFPAPNTAFRFHHQVFSFLPKGTPIPPSAPSKRHNSVV 120
           LLTLLLGFSSARPAPATMAGTSFFPAPNTAFRFHHQVFSFLPKGTPIPPSAPSKRHNSVV
Sbjct: 61  LLTLLLGFSSARPAPATMAGTSFFPAPNTAFRFHHQVFSFLPKGTPIPPSAPSKRHNSVV 120

Query: 121 DQIGV 125
           DQIGV
Sbjct: 121 DQIGV 125

[Close]

BLAST of Cp4.1LG13g00350 vs. NCBI nr
Match: KAG6601760.1 (hypothetical protein SDJN03_06993, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 2.20e-20
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 51  VSNASLVFVFLLTLLLGFSSARPAPATMAGTSFFPAPNTAFRFHHQVFSFLPKGTPIPPS 110
           +SN S+ F+ LL LL  F+SARP PATM   +F P PN A +F  Q FSFLP+G PIPPS
Sbjct: 5   LSNTSISFLLLLILLPPFTSARPPPATMPTHNFLPTPNAAIQFQRQFFSFLPRGVPIPPS 64

Query: 111 APSKRHNSVV 120
           APSKRHNSV+
Sbjct: 65  APSKRHNSVL 74

[Close]

BLAST of Cp4.1LG13g00350 vs. NCBI nr
Match: KGN51548.1 (hypothetical protein Csa_008377 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 3.83e-13
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 51  VSNASLVFVFLLTLLL-GFSSARPAPATMAG--TSFFPAPNTAFRFHHQVFSFLPKGTPI 110
           ++++S+ F+ LL L L  F++ARP PAT     +S      TAFRF+HQ+FSFLPKG PI
Sbjct: 1   MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKG-PI 60

Query: 111 PPSAPSKRHNSVVD 121
           PPSAPSKRHNS+++
Sbjct: 61  PPSAPSKRHNSLIN 73

[Close]

BLAST of Cp4.1LG13g00350 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.56e-12
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 31  LPESKSALFSLPMAATLCNNVSNASLVFVFLLTLLLGFSSA-RPAPATMAGTSFFPAPN- 90
           +P S S+  S   +++      N+  +F+ LL LL GFSSA RP      GT  FP  + 
Sbjct: 1   MPSSSSSSSSSSSSSSSFQFKQNSIPIFILLLLLLSGFSSATRPG-----GTMEFPDMSN 60

Query: 91  -----TAFRFHHQVFSFLPKGTPIPPSAPSKRHNSVVDQI 123
                TAFR+  Q F FLPKG PIPPS PS RHNSVVD +
Sbjct: 61  SNYKTTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSL 95

[Close]

BLAST of Cp4.1LG13g00350 vs. NCBI nr
Match: KJB50809.1 (hypothetical protein B456_008G187700 [Gossypium raimondii] >MBA0592970.1 hypothetical protein [Gossypium raimondii])

HSP 1 Score: 67.8 bits (164), Expect = 8.41e-12
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 48  CNNVSNASLVFV-FLLTLLLGFSSARPAPA---------TMAGTSFFPAPNTAFRFHHQV 107
           C     +++++V FL+TLL G S ARPA           T++ T F     T FR+  Q+
Sbjct: 17  CTRQQLSNIIYVVFLITLLAGSSFARPATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQM 76

Query: 108 FSFLPKGTPIPPSAPSKRHNSVVD 121
           F+F PKG PIPPS PSKRHNSVVD
Sbjct: 77  FNFFPKGIPIPPSGPSKRHNSVVD 100

[Close]

BLAST of Cp4.1LG13g00350 vs. ExPASy TrEMBL
Match: A0A0A0KPP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577390 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.85e-13
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 51  VSNASLVFVFLLTLLL-GFSSARPAPATMAG--TSFFPAPNTAFRFHHQVFSFLPKGTPI 110
           ++++S+ F+ LL L L  F++ARP PAT     +S      TAFRF+HQ+FSFLPKG PI
Sbjct: 1   MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLTTAFRFNHQIFSFLPKG-PI 60

Query: 111 PPSAPSKRHNSVVD 121
           PPSAPSKRHNS+++
Sbjct: 61  PPSAPSKRHNSLIN 73

[Close]

BLAST of Cp4.1LG13g00350 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.24e-12
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 31  LPESKSALFSLPMAATLCNNVSNASLVFVFLLTLLLGFSSA-RPAPATMAGTSFFPAPN- 90
           +P S S+  S   +++      N+  +F+ LL LL GFSSA RP      GT  FP  + 
Sbjct: 1   MPSSSSSSSSSSSSSSSFQFKQNSIPIFILLLLLLSGFSSATRPG-----GTMEFPDMSN 60

Query: 91  -----TAFRFHHQVFSFLPKGTPIPPSAPSKRHNSVVDQI 123
                TAFR+  Q F FLPKG PIPPS PS RHNSVVD +
Sbjct: 61  SNYKTTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSL 95

[Close]

BLAST of Cp4.1LG13g00350 vs. ExPASy TrEMBL
Match: A0A0D2T2V4 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G187700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.07e-12
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 48  CNNVSNASLVFV-FLLTLLLGFSSARPAPA---------TMAGTSFFPAPNTAFRFHHQV 107
           C     +++++V FL+TLL G S ARPA           T++ T F     T FR+  Q+
Sbjct: 17  CTRQQLSNIIYVVFLITLLAGSSFARPATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQM 76

Query: 108 FSFLPKGTPIPPSAPSKRHNSVVD 121
           F+F PKG PIPPS PSKRHNSVVD
Sbjct: 77  FNFFPKGIPIPPSGPSKRHNSVVD 100

[Close]

BLAST of Cp4.1LG13g00350 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.74e-12
Identity = 42/78 (53.85%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 53  NASLVFVFLLTLLLGFSSA-RPAPATMAGTSFFPAPN------TAFRFHHQVFSFLPKGT 112
           N+  +F+ LL LL GFSSA RP      GT  FP  +      TAFR+  Q F FLPKG 
Sbjct: 27  NSIPIFILLLLLLSGFSSATRPG-----GTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGV 86

Query: 113 PIPPSAPSKRHNSVVDQI 123
           PIPPS PS RHNSVVD +
Sbjct: 87  PIPPSGPSDRHNSVVDSL 99

[Close]

BLAST of Cp4.1LG13g00350 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.50e-11
Identity = 40/73 (54.79%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 57  VFVFLLTLLL--GFSSARPAPATMAGTSFFP----APNTAFRFHHQVFSFLPKGTPIPPS 116
           +F+ LL LLL  G SSA     TM  T   P    +  TAFR+  Q FSFLPKG PIPPS
Sbjct: 12  IFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPS 71

Query: 117 APSKRHNSVVDQI 123
            PS RHNSVVD +
Sbjct: 72  GPSDRHNSVVDSL 84

[Close]

BLAST of Cp4.1LG13g00350 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 27/70 (38.57%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 55  SLVFVFLLTLLLGFSSARPAPATMAGTSFFPAPNTAFRF-HHQVFSFLPKGTPIPPSAPS 114
           +++ +    L L  SS+  A A +  T           F +  +F +LPKG PIPPSAPS
Sbjct: 6   TMMVLLCFVLFLAASSSCVAAARIGATMEMKKNIKRLTFKNSHIFGYLPKGVPIPPSAPS 65

Query: 115 KRHNSVVDQI 124
           KRHNS V+ +
Sbjct: 66  KRHNSFVNSL 75

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g00350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	1.4e-04	38.57	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of Cp4.1LG13g00350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579701.1	1.02e-78	95.20	hypothetical protein SDJN03_24149, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6601760.1	2.20e-20	62.86	hypothetical protein SDJN03_06993, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN51548.1	3.83e-13	55.41	hypothetical protein Csa_008377 [Cucumis sativus]	[more]
KAA0034518.1	2.56e-12	46.00	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
KJB50809.1	8.41e-12	47.62	hypothetical protein B456_008G187700 [Gossypium raimondii] >MBA0592970.1 hypothe...	[more]

BLAST of Cp4.1LG13g00350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPP8	1.85e-13	55.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577390 PE=4 SV=1	[more]
A0A5A7SV51	1.24e-12	46.00	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0D2T2V4	4.07e-12	47.62	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G187700 PE=4 ...	[more]
A0A5D3CCP4	7.74e-12	53.85	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0KR07	1.50e-11	54.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]

BLAST of Cp4.1LG13g00350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	1.0e-05	38.57	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..125
None	No IPR available	PANTHER	PTHR33599:SF18	PROTEIN IDA	coord: 87..122
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 87..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g00350.1	Cp4.1LG13g00350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0110165	cellular anatomical entity