Cp4.1LG12g11690 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g11690
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S19
Location	Cp4.1LG12: 8514425 .. 8516276 (-)
RNA-Seq Expression	Cp4.1LG12g11690
Synteny	Cp4.1LG12g11690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAGGGCACTTATCGCTCCACGAAAAACCTAGAGTTTGAGAAAGGCGGAAACCCTAGTTCTGCAATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCCGCAGCCATGGCGACTGCAAGGACCGTTAAGGATGTCTCTCCTCACGAGTTTGTCAAGGCCTATGCCGCTCATCTCAAGCGATCCGGAAAGGTACCTATTTGGTTTCCTCAAATCGGGCTTTTCTGTTTTGGTGGCTGAGAGAACTTGATTTTCGGTTCAACGGAGTTTTTAGGATGTCGATAAACAGAGCGAATACTGAATTTGAAGTTCCAACGGTTCTAGTTCTTTCGTGGAGTGTGCTTGATTCTGCATTGGTTTCCCATTTTATTTACTTGTTTTGGCCCCTATTGTAGGTTTTTTTCAACATATCCTTCACTATCAAGAATGGTGGTTGCAATTATTAGGCTGTAGACTTTTCTAATGACCTGCTACTAATTTGTAGCTAATAAACCAGTTATGATCTATAACATATGTGATTTTAGCTTATTTTCTGTGTCAATCATTGCCGAGCAGGTTGAACTCCCGCCATGGACAGATATAGTGAAAACTGCAAGATTCAAAGAACTTGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGGTTAGTTTCCCTTTTTCTTCTTTTTGACGTCCAATTATATGAAATAAATAAATAAAAATGTAATTTAATTGCGGCCGTTATGCATGTTCTATCTGTGGTATTCTTATGAACACTATTTCAAACTCATTCAGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATTCTACAACAGTTGCAGGAGATGAACATTGTTGATGTGGACCCAAAGGGGTGAGTACAAACTTCTTATAGTCCATGTTTTATATAAATATTGGGGCTTGCATTGAGTCCAGACTCACTTTTAGCCTCGAGAACGCCTTCTTTGAACATAACAGGCTCATGCCTTCCATAGAGAAAAGCCTTATGCTTATGTAAAACAACCCATTGAGGCTTAAAATATTTATGCTTTCCGCAATGATTAGATAAATAATATTGATTTGCCTCATTATTTATAAATACAAATGTTTGAGTTGTGACAATTTGAATTATTGCTACGACTTTGAAACATTGAAGAAAAGAAATTATAGTATGAGTCAATCCTACTTCTGATAATAGCAAGTGATGTTAAAGATTAAGGGTCAAATTGTAGTAGAGAGGTTCTTGTATTTTATTTGATTAACTAATTTAGGATTTTAATTACATTTGAGACTTACCCCTCACACTACCTCAAGTCTTATTGCCTGCTCATGTCGAACAACTTTGAGGCTGCCTCCCATTGCAACTGATTATTCATTTGATTATGTTGGTTGATGTGTTTTTCATTTTGGGTTTGCAGTGGAAGGAGAATTACTTCAAGTGGGCGACGAGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAGATTGATCAATTACCTGTTTTGTTAACTCGAGACTTATATTTTGCTGATGAGATATAATTTCTTATGTTTTGCGCAATTAAAGTTTTAGATTTAGCTGTTGAAAGATTTTCCAGATGAAGATGGTTGCTCATGTTTTATCTCGAGTTTTGAATTGTCTGTCATTTGCTCTTCCGTTCATTATATTTTTTATGCTCTCAATGTTTTATCAACACTAACTTTGATGCTTGGCCTACAGAAGTTTTGCATTTAGAGGTATATTTATTCAGTTTTGTTTA

mRNA sequence

TATAGGGCACTTATCGCTCCACGAAAAACCTAGAGTTTGAGAAAGGCGGAAACCCTAGTTCTGCAATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCCGCAGCCATGGCGACTGCAAGGACCGTTAAGGATGTCTCTCCTCACGAGTTTGTCAAGGCCTATGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTCCCGCCATGGACAGATATAGTGAAAACTGCAAGATTCAAAGAACTTGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATTCTACAACAGTTGCAGGAGATGAACATTTGGAAGGAGAATTACTTCAAGTGGGCGACGAGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAGATTGATCAATTACCTGTTTTGTTAACTCGAGACTTATATTTTGCTGATGAGATATAATTTCTTATGTTTTGCGCAATTAAAGTTTTAGATTTAGCTGTTGAAAGATTTTCCAGATGAAGATGGTTGCTCATGTTTTATCTCGAGTTTTGAATTGTCTGTCATTTGCTCTTCCGTTCATTATATTTTTTATGCTCTCAATGTTTTATCAACACTAACTTTGATGCTTGGCCTACAGAAGTTTTGCATTTAGAGGTATATTTATTCAGTTTTGTTTA

Coding sequence (CDS)

ATGGCGACTGCAAGGACCGTTAAGGATGTCTCTCCTCACGAGTTTGTCAAGGCCTATGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTCCCGCCATGGACAGATATAGTGAAAACTGCAAGATTCAAAGAACTTGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATTCTACAACAGTTGCAGGAGATGAACATTTGGAAGGAGAATTACTTCAAGTGGGCGACGAGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAGATTGA

Protein sequence

MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIWKENYFKWATRSRSSCWQNCCCPLD

Homology

[Close]

BLAST of Cp4.1LG12g11690 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.9e-55
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 114
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNI
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 9.6e-55
Identity = 97/113 (85.84%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 114
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNI
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-54
Identity = 98/113 (86.73%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 114
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+I
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.4e-50
Identity = 91/112 (81.25%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 2   ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASM 61
           +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 114
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ+M I
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGI 115

[Close]

BLAST of Cp4.1LG12g11690 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-34
Identity = 60/108 (55.56%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 114
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ + I
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKI 111

[Close]

BLAST of Cp4.1LG12g11690 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (601), Expect = 1.82e-77
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo] >KAG7016113.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234 bits (598), Expect = 5.22e-77
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6602529.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033203.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234 bits (598), Expect = 5.22e-77
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. NCBI nr
Match: KAG6578553.1 (40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234 bits (598), Expect = 1.92e-76
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 40  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 99

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI
Sbjct: 100 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 152

[Close]

BLAST of Cp4.1LG12g11690 vs. NCBI nr
Match: XP_015879782.1 (40S ribosomal protein S19-3 [Ziziphus jujuba])

HSP 1 Score: 233 bits (593), Expect = 3.02e-76
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQ MNI
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQNMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. ExPASy TrEMBL
Match: A0A6J1JTW8 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=3 SV=1)

HSP 1 Score: 236 bits (601), Expect = 8.82e-78
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. ExPASy TrEMBL
Match: A0A6J1H7M6 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 PE=3 SV=1)

HSP 1 Score: 236 bits (601), Expect = 8.82e-78
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. ExPASy TrEMBL
Match: A0A6J1JX06 (40S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=1)

HSP 1 Score: 234 bits (598), Expect = 2.53e-77
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. ExPASy TrEMBL
Match: A0A6J1JTL0 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=3 SV=1)

HSP 1 Score: 234 bits (598), Expect = 2.53e-77
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. ExPASy TrEMBL
Match: A0A6J1EBL3 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 PE=3 SV=1)

HSP 1 Score: 234 bits (598), Expect = 2.53e-77
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-56
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 114
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNI
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 214.2 bits (544), Expect = 6.8e-56
Identity = 97/113 (85.84%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 114
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNI
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNI 113

[Close]

BLAST of Cp4.1LG12g11690 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-55
Identity = 98/113 (86.73%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNI 114
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+I
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSI 113

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g11690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNP8	1.9e-55	87.61	40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1	[more]
Q9SGA6	9.6e-55	85.84	40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1	[more]
Q9LF30	2.1e-54	86.73	40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1	[more]
P40978	5.4e-50	81.25	40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=...	[more]
Q94613	1.4e-34	55.56	40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1	[more]

BLAST of Cp4.1LG12g11690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954406.1	1.82e-77	100.00	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso...	[more]
XP_022938991.1	5.22e-77	99.12	40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal p...	[more]
XP_022923365.1	5.22e-77	99.12	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso...	[more]
KAG6578553.1	1.92e-76	99.12	40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_015879782.1	3.02e-76	98.23	40S ribosomal protein S19-3 [Ziziphus jujuba]	[more]

BLAST of Cp4.1LG12g11690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTW8	8.82e-78	100.00	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=...	[more]
A0A6J1H7M6	8.82e-78	100.00	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 P...	[more]
A0A6J1JX06	2.53e-77	99.12	40S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=...	[more]
A0A6J1JTL0	2.53e-77	99.12	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=...	[more]
A0A6J1EBL3	2.53e-77	99.12	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 P...	[more]

BLAST of Cp4.1LG12g11690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61170.1	1.4e-56	87.61	Ribosomal protein S19e family protein	[more]
AT3G02080.1	6.8e-56	85.84	Ribosomal protein S19e family protein	[more]
AT5G15520.1	1.5e-55	86.73	Ribosomal protein S19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	SMART	SM01413	Ribosomal_S19e_2	coord: 6..128 e-value: 2.1E-58 score: 210.0
IPR001266	Ribosomal protein S19e	PFAM	PF01090	Ribosomal_S19e	coord: 6..115 e-value: 7.6E-47 score: 158.4
IPR001266	Ribosomal protein S19e	PANTHER	PTHR11710	40S RIBOSOMAL PROTEIN S19	coord: 3..114
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..128 e-value: 6.6E-61 score: 206.7
None	No IPR available	PANTHER	PTHR11710:SF20	40S RIBOSOMAL PROTEIN S19-3	coord: 3..114
IPR018277	Ribosomal protein S19e, conserved site	PROSITE	PS00628	RIBOSOMAL_S19E	coord: 90..109
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 6..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g11690.1	Cp4.1LG12g11690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome